We at the Joint Genome Institute use JAZZ (our homegrown assembler) which runs well on a linux cluster consisting of amd dual core (~4 gigs of mem per node) and intel xeon (~2 gigs of mem per node). <br><br><div><span class="gmail_quote">
On 7/11/06, <b class="gmail_sendername">Tim Cutts</b> <<a href="mailto:tjrc@sanger.ac.uk">tjrc@sanger.ac.uk</a>> wrote:</span><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Sanger still does our WGS assembly work on single large memory<br>machines (SGI Altix, in our case). Any small memory properly<br>parallel alternative is definitely interesting though, so I'll have a<br>look at Euler. Getting those change-fearing users to actually use it
<br>might be a challenge, of course...<br><br>Tim<br>_______________________________________________<br>Bioclusters maillist - <a href="mailto:Bioclusters@bioinformatics.org">Bioclusters@bioinformatics.org</a><br><a href="https://bioinformatics.org/mailman/listinfo/bioclusters">
https://bioinformatics.org/mailman/listinfo/bioclusters</a><br></blockquote></div><br>