<div><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">What about:<br><br><a href="ftp://ftp.ncbi.nlm.nih.gov/genomes/Bacteria">ftp://ftp.ncbi.nlm.nih.gov/genomes/Bacteria
</a></blockquote><div><br>
yes, but I found only complete and published genomes there,<br>
what I need is to have the maximum of genomes, even if they are not completed or public.<br>
</div><br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">? Or you could look at TIGR and JGI sites; JGI in particular may have a<br>few that aren't anywhere else.
</blockquote><div><br>
And I need to download them by an automatic way, so how could I check if they don't exist elsewhere automatically.<br>
<br>
Furthermore, I want to have all the information about genomes, and especially the taxon classification of the organism <br>
(Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae)<br>
</div><br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">--titus<br><br>-> ibtissem grissa wrote:<br>-> ><br>-> >I want to download all bacterial genomes available (published and non
<br>-> >published) in fasta format in order to store them in a database,<br>-> >I want to cluster them (as actinobacteria, bacteroidetes,... )<br>-> >automatically.<br>-> ><br>-> >Could someone please suggest me a web site where I can download all
<br>-> >these information easily (a simple perl program)? I Would really<br>-> >appreciate it.<br>-> ><br>-> >Thank you,<br>-> >--<br>-> >Ibtissem<br>-><br>-> --<br>-> J.W. Bizzaro
<br>-> Bioinformatics Organization, Inc. (Bioinformatics.Org)<br>-> E-mail: <a href="mailto:jeff@bioinformatics.org">jeff@bioinformatics.org</a><br>-> Phone: +1 508 890 8600<br>-> --<br>-> _______________________________________________
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https://bioinformatics.org/mailman/listinfo/biodevelopers</a><br></blockquote></div><br><br clear="all"><br>-- <br>Ibtissem