Hi Sean, > > The updates to esearch, esummary, and the generic xml parser should all > be on CVS tomorrow morning (US West Coast time) along with HOPEFULLY a > functioning NCBI BLAST set of code. > I'll try them out. It might be a good idea to include some 'test' scripts`, as a demonstration/test of the functionality of the library and as a starting point for people to write their own scripts. > Nico - can you give me some hints as to your planned structure for > filetype > modules in the seqIOWrite section? One of the things I can work on > while on > the road are output modules for Phylip and Clustal (for example). I'd > also > like to work up a simplistic "compare the quality of the match between > two > aligned sequences" algorithm, just for quick automated "throw out bad > matches" > sort of applications. Actually, if you want to try to have a go at the basis of the seqIOWrite section, that would be great. I am very busy doing real biology right now, and I doubt I will get started soon on that part.. Best, Nico