On 2004-11-16 (10:57) Frieda S. Reichsman wrote: >On Nov 15, 2004, at 9:58 AM, Roberts, Rebecca wrote: > >>Hello - >> >>I've got a molecule that has a propeptide but there are no chain >>designations in the file to distinguish this part of the molecule >>from the rest. So, when selecting a region (I'm trying to select >>only the first 62 amino acids that consistitute the propiece) PE >>selects the first 62 and also the next 62 (because the residue >>numbering system begins again from '1' at the '63rd' amino acid). >>Any ideas on how to get around this when no chain designations are >>provided? >> >>Thanks - Rebecca > >Hi Rebecca, Your attachment did not come through (attachments are >not allowed on this list) so I cannot be sure of the format of the >file you mention, but I believe I have encountered this type of >problem before. My solution has been to use a text editor to select >the lines I want to add a chain designation to, and then use Find & >Replace within the selected text. It's pretty fast and gets you what >you need. > (excuse my speaking for Rebecca, but I believe she is traveling at the moment.) a good idea - except I have some inside information ;-) Rebecca was using the file in PE, coming straight from the PDB. so altering the file was not an option :-( neither was using Jmol. regards, tim -- Timothy Driscoll molvisions - see, grasp, learn. <http://www.molvisions.com/> usa:north carolina:wake forest