[Molvis-list] depicting lone pair electrons in rasmol or chime

[Lewis Edgel]

I got the webpage, but the links were not active... could you update it?

-----Original Message-----
From: molvis-list-bounces at bioinformatics.org
[mailto:molvis-list-bounces at bioinformatics.org]On Behalf Of will mcclure
Sent: den 9 december 2004 13:51
To: Molecular Visualization, especially in education with freeware
Subject: Re: [Molvis-list] depicting lone pair electrons in rasmol or
chime


We use one such Chime display for water in a biochem course:
<http://www.bio.cmu.edu/courses/03231/LecF04/Lec02/water.html>
Click on the "single molecule" button.
The lone pairs are "fake atoms" in the coordinate file; they can be 
selected as "LP" under Atom in the Chime menu.

-Will McClure

--On Wednesday, December 8, 2004 7:20 PM -0800 Michael Bruist 
<m.bruist at usip.edu> wrote:

> Can electron pairs be represented in chime or rasmol?  I want to
> set up some simple molecules and depict the lone pairs.  I was
> thinking of doing it with various sizes of overlapping "virtual"
> atoms in dots mode.  Has anyone tried this?
>
> Mike Bruist
>
> Dr. Michael F. Bruist
> Associate Professor of Biochemistry
> Department of Chemistry & Biochemistry
> Griffith Hall 144
> University of the Sciences in Philadelphia
> Philadelphia, PA 19104-4495
>
> Phone (Office & Voice Mail): 	(215) 596-8530
> Department Phone:				        -8839
> Department Fax:				        -8543
> E-mail:				  m.bruist @usip.edu
> web page:	        http://tonga.usip.edu/bruist
>
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