Hi Eric, If you're interested in local alignment + core detection, check: http://bioinfo3d.cs.tau.ac.il/c_alpha_match/ For multiple local alignment + core detection: http://bioinfo3d.cs.tau.ac.il/MultiProt/ or send me the files and I'll run them on sequence-independent MUSTA. Best regards, ilan ________________________ Ilan.Samish at weizmann.ac.il Plant Sciences Department Weizmann Institute of Science Tel: 972 8 934 4300 Fax: 972 8 934 4181 Mobile: 972 52 3321150 ~~~~~~~~~~~~~~~~~~~ Co-organizer of 3Dsig - Annual Structural Bioinformatics meeting http://3Dsig.weizmann.ac.il/ 3Dsig at weizmann.ac.il ----- Original Message ----- From: "timothy driscoll" <molvisions at mac.com> To: "Molecular Visualization, especially in education with freeware" <molvis-list at bioinformatics.org> Sent: Tuesday, January 04, 2005 11:41 PM Subject: Re: [Molvis-list] Structural alignment of alpha carbons? > On 2005-01-04 (16:17) Eric Martz wrote: > > >Can someone please tell me how to align a selected subset of atoms > >in two PDB file models that contain only alpha carbon atoms? > >Normally I do structural alignments in DeepView, but it seems to > >reject alpha-carbon-only models. Is there free software for Windows > >(or a server) that can align alpha-carbon only models? Or will > >someone kindly volunteer to do a single alignment for me? > > > > > hi Eric, > > will this work? > > <http://cl.sdsc.edu/ce.html> > > I don't see any restrictions against alpha-carbon only chains. > > regards, > > tim > -- > Timothy Driscoll > molvisions - see, grasp, learn. > <http://www.molvisions.com/> > usa:north carolina:wake forest > > "There's too much blood in my caffeine system." > _______________________________________________ > Molvis-list mailing list > Molvis-list at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/molvis-list > >