[Molvis-list] help: SS-bond in Rasmol-2.7.3

[Michael]

Hello Dr. Shu,
I am flattered that you asked me, but I have not advanced yet to your level. 
Therefor I do not know. Try Prof. Eric Martz at emartz at microbio.umass.edu
Michael Bunnemmeyer, MD

----- Original Message ----- 
From: "Nanjiang Shu" <nanjiang.shu at gmail.com>
To: <molvis-list at bioinformatics.org>
Sent: Tuesday, March 14, 2006 5:36 AM
Subject: [Molvis-list] help: SS-bond in Rasmol-2.7.3


> Hello,
>
>   I have a question about the ssbond function in Rasmol.
>
>   For protein with PDB code "1AOL", when typing SS-bond, it shows there 
> are 6
>   SS bridges, and the distance between bonded sulfur atoms is around 2 Å.
>   However, both PDB file and DSSP file do not indicate there are any 
> SS-bonds
>   for that protein. What scheme does Rasmol use to determine whether there 
> is
>   an SS-bond or not? Something other than DSSP and PDB file?
>
> Thanks very much.
>
> Yours sincerely,
> Nanjiang S
>
> ------------------------------
> Nanjiang Shu, PhD
> Structural Chemistry
> Stockholm University
> Sweden
>
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