Basic Information | |||
Gene ID | 60642 | ||
Gene Name | sox9b | ||
Full Name | HMG box transcription factor Sox9b | ||
Organism | Danio rerio [7955] |
Cross Reference | |||
UniProt | Q9DFH1 | UniGene | Dr.114501 |
PDB | NULL | OMIM | NULL |
KEGG | dre:60642 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
NP_571719 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 89 | 169 | 5.10e-34 | High mobility group box domain |
NP_571719 | Pfam | PF00505 | IPR009071 | 91 | 159 | 1.40e-24 | High mobility group box domain |
NP_571719 | Pfam | PF12444 | IPR022151 | 16 | 81 | 4.00e-21 | Sox developmental protein N-terminal |
NP_571719 | ProSiteProfiles | PS50118 | IPR009071 | 91 | 159 | 0.00e-00 | High mobility group box domain |
NP_571719 | SMART | SM00398 | IPR009071 | 90 | 160 | 1.20e-29 | High mobility group box domain |
NP_571719 | SUPERFAMILY | SSF47095 | IPR009071 | 75 | 163 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
NP_571719 | PF00505 | 1.4e-24 | HMG_box | HMG (high mobility group) box |
NP_571719 | PF12444 | 4e-21 | Sox_N | Sox developmental protein N terminal |
NP_571719 | PF09011 | 2.7e-10 | HMG_box_2 | HMG-box domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
NP_571719 | GO:0001501 | biological_process | skeletal system development |
NP_571719 | GO:0001502 | biological_process | cartilage condensation |
NP_571719 | GO:0001708 | biological_process | cell fate specification |
NP_571719 | GO:0001837 | biological_process | epithelial to mesenchymal transition |
NP_571719 | GO:0001894 | biological_process | tissue homeostasis |
NP_571719 | GO:0001934 | biological_process | positive regulation of protein phosphorylation |
NP_571719 | GO:0001942 | biological_process | hair follicle development |
NP_571719 | GO:0002053 | biological_process | positive regulation of mesenchymal cell proliferation |
NP_571719 | GO:0002683 | biological_process | negative regulation of immune system process |
NP_571719 | GO:0003170 | biological_process | heart valve development |
NP_571719 | GO:0003179 | biological_process | heart valve morphogenesis |
NP_571719 | GO:0003203 | biological_process | endocardial cushion morphogenesis |
NP_571719 | GO:0003413 | biological_process | chondrocyte differentiation involved in endochondral bone morphogenesis |
NP_571719 | GO:0003415 | biological_process | chondrocyte hypertrophy |
NP_571719 | GO:0006334 | biological_process | nucleosome assembly |
NP_571719 | GO:0006338 | biological_process | chromatin remodeling |
NP_571719 | GO:0006351 | biological_process | transcription, DNA-templated |
NP_571719 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
NP_571719 | GO:0006366 | biological_process | transcription from RNA polymerase II promoter |
NP_571719 | GO:0006461 | biological_process | protein complex assembly |
NP_571719 | GO:0006468 | biological_process | protein phosphorylation |
NP_571719 | GO:0007165 | biological_process | signal transduction |
NP_571719 | GO:0007173 | biological_process | epidermal growth factor receptor signaling pathway |
NP_571719 | GO:0007283 | biological_process | spermatogenesis |
NP_571719 | GO:0008284 | biological_process | positive regulation of cell proliferation |
NP_571719 | GO:0010564 | biological_process | regulation of cell cycle process |
NP_571719 | GO:0010634 | biological_process | positive regulation of epithelial cell migration |
NP_571719 | GO:0014068 | biological_process | positive regulation of phosphatidylinositol 3-kinase signaling |
NP_571719 | GO:0019100 | biological_process | male germ-line sex determination |
NP_571719 | GO:0019933 | biological_process | cAMP-mediated signaling |
NP_571719 | GO:0030279 | biological_process | negative regulation of ossification |
NP_571719 | GO:0030858 | biological_process | positive regulation of epithelial cell differentiation |
NP_571719 | GO:0030916 | biological_process | otic vesicle formation |
NP_571719 | GO:0032331 | biological_process | negative regulation of chondrocyte differentiation |
NP_571719 | GO:0032332 | biological_process | positive regulation of chondrocyte differentiation |
NP_571719 | GO:0035019 | biological_process | somatic stem cell maintenance |
NP_571719 | GO:0042127 | biological_process | regulation of cell proliferation |
NP_571719 | GO:0042981 | biological_process | regulation of apoptotic process |
NP_571719 | GO:0043066 | biological_process | negative regulation of apoptotic process |
NP_571719 | GO:0043491 | biological_process | protein kinase B signaling |
NP_571719 | GO:0045662 | biological_process | negative regulation of myoblast differentiation |
NP_571719 | GO:0045892 | biological_process | negative regulation of transcription, DNA-templated |
NP_571719 | GO:0045944 | biological_process | positive regulation of transcription from RNA polymerase II promoter |
NP_571719 | GO:0046533 | biological_process | negative regulation of photoreceptor cell differentiation |
NP_571719 | GO:0050679 | biological_process | positive regulation of epithelial cell proliferation |
NP_571719 | GO:0050680 | biological_process | negative regulation of epithelial cell proliferation |
NP_571719 | GO:0051216 | biological_process | cartilage development |
NP_571719 | GO:0060008 | biological_process | Sertoli cell differentiation |
NP_571719 | GO:0060041 | biological_process | retina development in camera-type eye |
NP_571719 | GO:0060221 | biological_process | retinal rod cell differentiation |
NP_571719 | GO:0060517 | biological_process | epithelial cell proliferation involved in prostatic bud elongation |
NP_571719 | GO:0060729 | biological_process | intestinal epithelial structure maintenance |
NP_571719 | GO:0060784 | biological_process | regulation of cell proliferation involved in tissue homeostasis |
NP_571719 | GO:0061138 | biological_process | morphogenesis of a branching epithelium |
NP_571719 | GO:0070168 | biological_process | negative regulation of biomineral tissue development |
NP_571719 | GO:0070371 | biological_process | ERK1 and ERK2 cascade |
NP_571719 | GO:0071260 | biological_process | cellular response to mechanical stimulus |
NP_571719 | GO:0071364 | biological_process | cellular response to epidermal growth factor stimulus |
NP_571719 | GO:0071504 | biological_process | cellular response to heparin |
NP_571719 | GO:0072034 | biological_process | renal vesicle induction |
NP_571719 | GO:0072289 | biological_process | metanephric nephron tubule formation |
NP_571719 | GO:0090090 | biological_process | negative regulation of canonical Wnt signaling pathway |
NP_571719 | GO:0090103 | biological_process | cochlea morphogenesis |
NP_571719 | GO:0090184 | biological_process | positive regulation of kidney development |
NP_571719 | GO:0090190 | biological_process | positive regulation of branching involved in ureteric bud morphogenesis |
NP_571719 | GO:2000020 | biological_process | positive regulation of male gonad development |
NP_571719 | GO:2000741 | biological_process | positive regulation of mesenchymal stem cell differentiation |
NP_571719 | GO:0005634 | cellular_component | nucleus |
NP_571719 | GO:0043234 | cellular_component | protein complex |
NP_571719 | GO:0001046 | molecular_function | core promoter sequence-specific DNA binding |
NP_571719 | GO:0001077 | molecular_function | RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription |
NP_571719 | GO:0001158 | molecular_function | enhancer sequence-specific DNA binding |
NP_571719 | GO:0003677 | molecular_function | DNA binding |
NP_571719 | GO:0003682 | molecular_function | chromatin binding |
NP_571719 | GO:0003705 | molecular_function | RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity |
NP_571719 | GO:0004672 | molecular_function | protein kinase activity |
NP_571719 | GO:0035326 | molecular_function | enhancer binding |