PredictBias

identification of genomic and pathogenicity islands in prokaryotic genome
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A) Input parameters
Genome2201.gbkThreshold dinucleotide bias2
Threshold codon bias4Threshold %GC bias3
E-value (RPSBlast)0.05Genome (non-pathogenic)
 
B) Compare a potential GI or PAI in related non-pathogenic sp. (phylogenetic tree)
Potential GI or PAI start    end  
Select Organism     
 
C) Potential GIs and PAIs in NC_006511 (download)
S.NoStartEndBiasVirulenceInsertion elementsPrediction
1SPA0008SPA0034Y        Y        NPathogenicity Island (biased-composition)
2SPA0052SPA0065Y        Y        NPathogenicity Island (biased-composition)
3SPA0103SPA0109Y        Y        NPathogenicity Island (biased-composition)
4SPA0152SPA0162Y        Y        NPathogenicity Island (biased-composition)
5SPA0177SPA0209Y        Y        NPathogenicity Island (biased-composition)
6SPA0286SPA0300Y        Y        NPathogenicity Island (biased-composition)
7SPA0324SPA0362Y        Y        NPathogenicity Island (biased-composition)
8SPA0373SPA0384Y        Y        NPathogenicity Island (biased-composition)
9SPA0397SPA0415Y        Y        NPathogenicity Island (biased-composition)
10SPA0424SPA0468Y        Y        YPathogenicity Island (biased-composition)
11SPA0480SPA0495Y        Y        NPathogenicity Island (biased-composition)
12SPA0536SPA0558Y        Y        NPathogenicity Island (biased-composition)
13SPA0585SPA0619Y        Y        NPathogenicity Island (biased-composition)
14SPA0661SPA0738Y        Y        NPathogenicity Island (biased-composition)
15SPA0751SPA0789Y        Y        NPathogenicity Island (biased-composition)
16SPA0813SPA0843Y        Y        NPathogenicity Island (biased-composition)
17SPA0857SPA0871Y        Y        YPathogenicity Island (biased-composition)
18SPA0884SPA0898Y        Y        NPathogenicity Island (biased-composition)
19SPA0992SPA1017Y        Y        YPathogenicity Island (biased-composition)
20SPA1142SPA1153Y        NNGenomic Island
21SPA1179SPA1194Y        Y        YPathogenicity Island (biased-composition)
22SPA1207SPA1232Y        Y        NPathogenicity Island (biased-composition)
23SPA1301SPA1325Y        NNGenomic Island
24SPA1425SPA1472Y        Y        YPathogenicity Island (biased-composition)
25SPA1499SPA1514Y        Y        NPathogenicity Island (biased-composition)
26SPA1527SPA1544Y        NNGenomic Island
27SPA1555SPA1611Y        Y        YPathogenicity Island (biased-composition)
28SPA1660SPA1673Y        Y        NPathogenicity Island (biased-composition)
29SPA1704SPA1727Y        Y        YPathogenicity Island (biased-composition)
30SPA1743SPA1762Y        Y        NPathogenicity Island (biased-composition)
31SPA1822SPA1838Y        Y        NPathogenicity Island (biased-composition)
32SPA1861SPA1878Y        Y        NPathogenicity Island (biased-composition)
33SPA1951SPA1965Y        Y        NPathogenicity Island (biased-composition)
34SPA2006SPA2036Y        Y        NPathogenicity Island (biased-composition)
35SPA2108SPA2114Y        Y        NPathogenicity Island (biased-composition)
36SPA2124SPA2146Y        Y        NPathogenicity Island (biased-composition)
37SPA2165SPA2198Y        Y        YPathogenicity Island (biased-composition)
38SPA2270SPA2293Y        Y        YPathogenicity Island (biased-composition)
39SPA2364SPA2428Y        Y        NPathogenicity Island (biased-composition)
40SPA2445SPA2501Y        Y        NPathogenicity Island (biased-composition)
41SPA2530SPA2652Y        Y        YPathogenicity Island (biased-composition)
42SPA2692SPA2784Y        Y        NPathogenicity Island (biased-composition)
43SPA2794SPA2817Y        Y        NPathogenicity Island (biased-composition)
44SPA2889SPA2900Y        Y        YPathogenicity Island (biased-composition)
45SPA2976SPA2997Y        Y        YPathogenicity Island (biased-composition)
46SPA3135SPA3163Y        Y        YPathogenicity Island (biased-composition)
47SPA3213SPA3225Y        Y        NPathogenicity Island (biased-composition)
48SPA3410SPA3442Y        Y        NPathogenicity Island (biased-composition)
49SPA3467SPA3472Y        NNGenomic Island
50SPA3485SPA3503Y        Y        YPathogenicity Island (biased-composition)
51SPA3523SPA3531Y        NNGenomic Island
52SPA3561SPA3572Y        Y        NPathogenicity Island (biased-composition)
53SPA3595SPA3608Y        Y        YPathogenicity Island (biased-composition)
54SPA3626SPA3633Y        Y        NPathogenicity Island (biased-composition)
55SPA3658SPA3667Y        Y        NPathogenicity Island (biased-composition)
56SPA3701SPA3710Y        Y        NPathogenicity Island (biased-composition)
57SPA3769SPA3793Y        Y        YPathogenicity Island (biased-composition)
58SPA3849SPA3855Y        Y        NPathogenicity Island (biased-composition)
59SPA3914SPA3920Y        NNGenomic Island
60SPA4069SPA4097Y        Y        NPathogenicity Island (biased-composition)
61SPA4125SPA4138Y        Y        YPathogenicity Island (biased-composition)
62SPA4168SPA4185Y        Y        YPathogenicity Island (biased-composition)
63SPA4283SPA4323Y        Y        YPathogenicity Island (biased-composition)
64SPA0047SPA0059N        Y        NPathogenicity Island (unbiased-composition)
65SPA0461SPA0472N        Y        YPathogenicity Island (unbiased-composition)
66SPA0496SPA0504N        Y        NPathogenicity Island (unbiased-composition)
67SPA0589SPA0597N        Y        NPathogenicity Island (unbiased-composition)
68SPA0734SPA0741N        Y        NPathogenicity Island (unbiased-composition)
69SPA0769SPA0778N        Y        NPathogenicity Island (unbiased-composition)
70SPA0812SPA0819N        Y        NPathogenicity Island (unbiased-composition)
71SPA0889SPA0905N        Y        NPathogenicity Island (unbiased-composition)
72SPA0945SPA0954N        Y        NPathogenicity Island (unbiased-composition)
73SPA1101SPA1108N        Y        NPathogenicity Island (unbiased-composition)
74SPA1425SPA1435N        Y        YPathogenicity Island (unbiased-composition)
75SPA1450SPA1466N        Y        NPathogenicity Island (unbiased-composition)
76SPA1666SPA1675N        Y        NPathogenicity Island (unbiased-composition)
77SPA1754SPA1760N        Y        NPathogenicity Island (unbiased-composition)
78SPA1866SPA1872N        Y        NPathogenicity Island (unbiased-composition)
79SPA1892SPA1899N        Y        NPathogenicity Island (unbiased-composition)
80SPA1933SPA1938N        Y        NPathogenicity Island (unbiased-composition)
81SPA2136SPA2141N        Y        NPathogenicity Island (unbiased-composition)
82SPA2238SPA2247N        Y        NPathogenicity Island (unbiased-composition)
83SPA2310SPA2316N        Y        NPathogenicity Island (unbiased-composition)
84SPA2325SPA2329N        Y        NPathogenicity Island (unbiased-composition)
85SPA2349SPA2356N        Y        NPathogenicity Island (unbiased-composition)
86SPA2543SPA2551N        Y        NPathogenicity Island (unbiased-composition)
87SPA2669SPA2675N        Y        NPathogenicity Island (unbiased-composition)
88SPA2736SPA2756N        Y        NPathogenicity Island (unbiased-composition)
89SPA2809SPA2816N        Y        NPathogenicity Island (unbiased-composition)
90SPA3252SPA3259N        Y        NPathogenicity Island (unbiased-composition)
91SPA3308SPA3312N        Y        NPathogenicity Island (unbiased-composition)
92SPA3318SPA3333N        Y        NPathogenicity Island (unbiased-composition)
93SPA3366SPA3373N        Y        NPathogenicity Island (unbiased-composition)
94SPA3403SPA3409N        Y        NPathogenicity Island (unbiased-composition)
95SPA3425SPA3443N        Y        NPathogenicity Island (unbiased-composition)
96SPA3550SPA3557N        Y        NPathogenicity Island (unbiased-composition)
97SPA3604SPA3612N        Y        NPathogenicity Island (unbiased-composition)
98SPA3671SPA3677N        Y        NPathogenicity Island (unbiased-composition)
99SPA3844SPA3850N        Y        NPathogenicity Island (unbiased-composition)
100SPA4007SPA4022N        Y        YPathogenicity Island (unbiased-composition)
101SPA4105SPA4110N        Y        NPathogenicity Island (unbiased-composition)
102SPA4175SPA4181N        Y        NPathogenicity Island (unbiased-composition)
103SPA4372SPA4378N        Y        NPathogenicity Island (unbiased-composition)

 
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