PredictBias

identification of genomic and pathogenicity islands in prokaryotic genome
Home | Help | Analyzed genomes
 
A) Input parameters
Genome2736.gbkThreshold dinucleotide bias2
Threshold codon bias4Threshold %GC bias3
E-value (RPSBlast)0.05Genome (non-pathogenic)
 
B) Compare a potential GI or PAI in related non-pathogenic sp. (phylogenetic tree)
Potential GI or PAI start    end  
Select Organism     
 
C) Potential GIs and PAIs in NC_009783 (download)
S.NoStartEndBiasVirulenceInsertion elementsPrediction
1VIBHAR_00182VIBHAR_00188Y        NYGenomic Island
2VIBHAR_00279VIBHAR_00285Y        Y        NPathogenicity Island (biased-composition)
3VIBHAR_00314VIBHAR_00336Y        Y        YPathogenicity Island (biased-composition)
4VIBHAR_00407VIBHAR_00422Y        Y        NPathogenicity Island (biased-composition)
5VIBHAR_00533VIBHAR_00551Y        Y        YPathogenicity Island (biased-composition)
6VIBHAR_00657VIBHAR_00677Y        Y        NPathogenicity Island (biased-composition)
7VIBHAR_00686VIBHAR_00713Y        Y        NPathogenicity Island (biased-composition)
8VIBHAR_00826VIBHAR_00845Y        NYGenomic Island
9VIBHAR_01108VIBHAR_01120Y        NNGenomic Island
10VIBHAR_01302VIBHAR_01318Y        Y        NPathogenicity Island (biased-composition)
11VIBHAR_01391VIBHAR_01398Y        Y        YPathogenicity Island (biased-composition)
12VIBHAR_01413VIBHAR_01419Y        Y        NPathogenicity Island (biased-composition)
13VIBHAR_01468VIBHAR_01500Y        Y        NPathogenicity Island (biased-composition)
14VIBHAR_01623VIBHAR_01653Y        Y        YPathogenicity Island (biased-composition)
15VIBHAR_01664VIBHAR_01691Y        Y        NPathogenicity Island (biased-composition)
16VIBHAR_01721VIBHAR_01738Y        Y        NPathogenicity Island (biased-composition)
17VIBHAR_01774VIBHAR_01780Y        Y        NPathogenicity Island (biased-composition)
18VIBHAR_01938VIBHAR_01953Y        NYGenomic Island
19VIBHAR_01962VIBHAR_01993Y        Y        NPathogenicity Island (biased-composition)
20VIBHAR_02004VIBHAR_02024Y        NNGenomic Island
21VIBHAR_02052VIBHAR_02067Y        Y        NPathogenicity Island (biased-composition)
22VIBHAR_02080VIBHAR_02091Y        NNGenomic Island
23VIBHAR_02140VIBHAR_02154Y        NNGenomic Island
24VIBHAR_02189VIBHAR_02198Y        Y        NPathogenicity Island (biased-composition)
25VIBHAR_02315VIBHAR_02325Y        Y        NPathogenicity Island (biased-composition)
26VIBHAR_02565VIBHAR_02580Y        NNGenomic Island
27VIBHAR_02610VIBHAR_02617Y        NNGenomic Island
28VIBHAR_02800VIBHAR_02845Y        Y        YPathogenicity Island (biased-composition)
29VIBHAR_02906VIBHAR_02916Y        Y        NPathogenicity Island (biased-composition)
30VIBHAR_02969VIBHAR_03016Y        Y        YPathogenicity Island (biased-composition)
31VIBHAR_03071VIBHAR_03076Y        NNGenomic Island
32VIBHAR_03148VIBHAR_03159Y        Y        NPathogenicity Island (biased-composition)
33VIBHAR_03331VIBHAR_03350Y        Y        NPathogenicity Island (biased-composition)
34VIBHAR_03389VIBHAR_03396Y        Y        NPathogenicity Island (biased-composition)
35VIBHAR_03457VIBHAR_03463Y        Y        NPathogenicity Island (biased-composition)
36VIBHAR_03533VIBHAR_03544Y        Y        NPathogenicity Island (biased-composition)
37VIBHAR_03559VIBHAR_03564Y        NNGenomic Island
38VIBHAR_03635VIBHAR_03665Y        Y        NPathogenicity Island (biased-composition)
39VIBHAR_00123VIBHAR_00130N        Y        NPathogenicity Island (unbiased-composition)
40VIBHAR_00480VIBHAR_00490N        Y        YPathogenicity Island (unbiased-composition)
41VIBHAR_00594VIBHAR_00612N        Y        NPathogenicity Island (unbiased-composition)
42VIBHAR_00857VIBHAR_00868N        Y        NPathogenicity Island (unbiased-composition)
43VIBHAR_01129VIBHAR_01140N        Y        NPathogenicity Island (unbiased-composition)
44VIBHAR_01287VIBHAR_01307N        Y        NPathogenicity Island (unbiased-composition)
45VIBHAR_01317VIBHAR_01326N        Y        NPathogenicity Island (unbiased-composition)
46VIBHAR_01438VIBHAR_01446N        Y        YPathogenicity Island (unbiased-composition)
47VIBHAR_01700VIBHAR_01713N        Y        NPathogenicity Island (unbiased-composition)
48VIBHAR_01720VIBHAR_01731N        Y        NPathogenicity Island (unbiased-composition)
49VIBHAR_01871VIBHAR_01877N        Y        NPathogenicity Island (unbiased-composition)
50VIBHAR_02191VIBHAR_02197N        Y        NPathogenicity Island (unbiased-composition)
51VIBHAR_02519VIBHAR_02525N        Y        NPathogenicity Island (unbiased-composition)
52VIBHAR_02541VIBHAR_02547N        Y        NPathogenicity Island (unbiased-composition)
53VIBHAR_02658VIBHAR_02664N        Y        NPathogenicity Island (unbiased-composition)
54VIBHAR_03138VIBHAR_03179N        Y        NPathogenicity Island (unbiased-composition)
55VIBHAR_03517VIBHAR_03523N        Y        NPathogenicity Island (unbiased-composition)
56VIBHAR_03685VIBHAR_03698N        Y        NPathogenicity Island (unbiased-composition)

 
Contact Sachin Pundhir for Bugs/Comments.
For best view 1024 x 768 resolution & IE 6.0 or above recommended.