>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 48.5 bits (115), Expect = 3e-08 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 4/86 (4%) Query: 18 EEQSQKPTTEESVKEEAAEAPAAEQQPTEEVAEQAEEKAAVEAEPEKAEAAPAEAEAEAE 77 E+ Q T + E A+ E + + Q E A +E ++ + + A E Sbjct: 1052 EKNEQDATETTAQNREVAK----EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107 Query: 78 AEAEAEAEEPQVAVAPRVQEQEKPTE 103 E +A+ E + P+V Q P + Sbjct: 1108 KEEKAKVETEKTQEVPKVTSQVSPKQ 1133 Score = 33.5 bits (76), Expect = 0.002 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 15/104 (14%) Query: 16 GDEEQSQKPTTEESV---KEEAAEAPAAEQQPTEEVAEQAEEKAAVEAEPEKAEAAPAEA 72 + +++Q T+E+ KEE A+ + Q E + + V + E++E +A Sbjct: 1090 SETKETQTTETKETATVEKEEKAKVETEKTQ------EVPKVTSQVSPKQEQSETVQPQA 1143 Query: 73 EAEAEAEAEAEAEEPQVAVAPRVQEQEKPTESFFARLKRSLSRT 116 E E + +EPQ Q A+ S Sbjct: 1144 EPARENDPTVNIKEPQ------SQTNTTADTEQPAKETSSNVEQ 1181 Score = 31.6 bits (71), Expect = 0.006 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 10/91 (10%) Query: 20 QSQKPTTEESVKEEAA--------EAPAAEQQPTEEVAEQA--EEKAAVEAEPEKAEAAP 69 Q+ P+ + +E A APA + TE VAE + E K + E + E Sbjct: 1004 QADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTA 1063 Query: 70 AEAEAEAEAEAEAEAEEPQVAVAPRVQEQEK 100 E EA++ +A VA E ++ Sbjct: 1064 QNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Score = 30.4 bits (68), Expect = 0.017 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 11/97 (11%) Query: 19 EQSQKPTTEESVKEEAAE--APAAEQQPTEE----VAEQAEEKAAVEAEPEKAEAAPAEA 72 E +++ ++KE ++ A +QP +E V + E V E Sbjct: 1144 EPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTT 1203 Query: 73 EAEAEAEAEAEAEE-----PQVAVAPRVQEQEKPTES 104 A + +E+ + +V E T S Sbjct: 1204 PATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTS 1240 Score = 29.3 bits (65), Expect = 0.038 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 2/83 (2%) Query: 17 DEEQSQKPTTEESVKEEAAEAPAAEQQPTEEVAEQAEEKAAVEAEPEKAEAAPAEAEAEA 76 ++E+ K TE++ + + + +Q E Q + + A E +P +++ Sbjct: 1107 EKEEKAKVETEKTQEVPKVTSQVSPKQEQSE-TVQPQAEPARENDPTVN-IKEPQSQTNT 1164 Query: 77 EAEAEAEAEEPQVAVAPRVQEQE 99 A+ E A+E V V E Sbjct: 1165 TADTEQPAKETSSNVEQPVTEST 1187
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 30.5 bits (68), Expect = 0.015 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 8/93 (8%) Query: 49 IATLAALFFLEYVVKKVVYASSST--WNYFSVRKM------RRSRRYTNEGIIKLLEGDW 100 I ++ + L V+K + ++ Y R + N+ + +L + W Sbjct: 672 IKEVSNIKDLSSNVEKSQFFTTYDMRGTYVGGRSQGEENDWKDMNSKLNDILKELSKKSW 731 Query: 101 KGAEKKVTRWANHHDMPLLCYLVASEAAQGQGD 133 G + + NH Y+ D Sbjct: 732 NGYKTVTAYFVNHKVDGNGNYVYDVVFHGMNTD 764
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 42.5 bits (100), Expect = 3e-06 Identities = 39/193 (20%), Positives = 62/193 (32%), Gaps = 43/193 (22%) Query: 170 QHQLNLYQTPKKKELKAHGRDLQDIIGQ----QQGKRALEIAAAGNHNLLFLGPPGTGKT 225 + + +L+ +D ++G+ Q+ R L + L+ G GTGK Sbjct: 115 IGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKE 174 Query: 226 MLASRLCDLLPEMSDEEAMETASVASLTQSEINEHNWKTRPFRAPH-----HSSSMAALV 280 ++A L D + PF A + + L Sbjct: 175 LVARALHDYGK-------------------------RRNGPFVAINMAAIPRDLIESELF 209 Query: 281 G-------GGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLESGEIIISRAQGKT 333 G G G A G LFLDE+ + L L+ GE + G+T Sbjct: 210 GHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGE--YTTVGGRT 267 Query: 334 RFPARFQIVGALN 346 + +IV A N Sbjct: 268 PIRSDVRIVAATN 280
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 50.3 bits (120), Expect = 8e-09 Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 10/179 (5%) Query: 8 LVYLAALSMLGFIATDMYLPAFKAMEVDFATGPEQIALSLTVFLVGMAFGQLMWGLASDK 67 L++L LS + + + + DF P T F++ + G ++G SD+ Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 68 FGHRNTLAAGLALFTVASFGLAFSEQVWQLLAL-RFVQAIGVCA----PAVIWQAMVIKR 122 G + L G+ + S + LL + RF+Q G A V+ + K Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 123 HSGQSQQIFATIMPLVALSPALAPQLGVLLADSFGWHSIFV--ALTLMGVLLVVATMAQ 179 + G++ F I +VA+ + P +G ++A W + + +T++ V ++ + + Sbjct: 136 NRGKA---FGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKK 191
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 208 bits (530), Expect = 8e-60 Identities = 74/154 (48%), Positives = 99/154 (64%), Gaps = 1/154 (0%) Query: 706 DAILVFPESSGIAPLYVVYKESPRDKPGVVTGKGEDIFGIWLAGAGKDLGAPIPSQIADK 765 D I+ FP SGI P+YV++++ PRD PG TGKG+ + G WL A + GAPIPSQIADK Sbjct: 465 DLIIGFPADSGIKPIYVMFRD-PRDVPGAATGKGQPVSGNWLGAASQGEGAPIPSQIADK 523 Query: 766 LRGKEFSSFDAFRKAFWLEVSKDSDLKGQFNAQNQIRIGLGKAPKARSRDKVGKRKSFEL 825 LRGK F ++ FR+ FW+ V+ D +L QFN + + G AP R ++ G R E+ Sbjct: 524 LRGKTFKNWRDFREQFWIAVANDPELSKQFNPGSLAVMRDGGAPYVRESEQAGGRIKIEI 583 Query: 826 HHVDEVQNGGKVYDLDNLKVTTPKNHIDIHRGMK 859 HH V +GG VY++ NL TPK HI+IH+G K Sbjct: 584 HHKVRVADGGGVYNMGNLVAVTPKRHIEIHKGGK 617
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 215 bits (549), Expect = 6e-75 Identities = 70/154 (45%), Positives = 105/154 (68%) Query: 3 KVIYPGTFDPITNGHLDIITRAANMFDQIIIGVAASPSKKTLFSLEERVKLVEESTAHLS 62 IYPG+FDPIT GHLDII R +FDQ+ + V +P+K+ +FS++ER++ + ++ AHL Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 63 NVSTAGFSGLLVDFAREQEANVLVRGLRTTVDFEYEFGLTSMYRKLLPGVESVFLTPAEE 122 N F GL V++AR+++A ++RGLR DFE E + + + L +E+VFLT + E Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 123 YAFLSSTIVREVAIHGGDVEQFVPKCVYTAIKTK 156 Y+FLSS++V+EVA GG+VE FVP V A+ + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQ 155
>PF05307#Bundlin Length = 193 Score = 30.5 bits (68), Expect = 0.002 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 10/83 (12%) Query: 68 GIVIGSQAKVEKGCRIYQQVTIGSNFDSDNSMAHVSENTYIGSGAKIIGGISIGKNCYVG 127 +V+ A V G Y Q S DS+ S +SE + S I G+ IG+ Y G Sbjct: 20 AMVLALAATVTAGVMFYYQ----SASDSNKSQNAISE---VMSATSAINGLYIGQTSYTG 72 Query: 128 ANAVI---TKNVADNSSIVGNNK 147 N+ I T + DN NNK Sbjct: 73 LNSNILLNTSAIPDNYKDTKNNK 95
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 44.8 bits (106), Expect = 3e-07 Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 26/214 (12%) Query: 34 SFLVLGGAGSIGQAVTKEIFKRNPKKLHVVDISENNMVELVRDIRSSFGYIDGDFQTFAL 93 +LV G AG IG V+K + + + + + ++++ V L + FQ + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA--QPGFQFHKI 59 Query: 94 DIGSLEYDAFIKADGKFDYVLNLSALKHVR-SEKDPYTLMRMIDVNVFNTDKTIQQSIDA 152 D+ E + A G F+ V VR S ++P+ D N+ ++ Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAY---ADSNLTGFLNILEGCRHN 116 Query: 153 GAKKYFCVST---------------DKAANPVNMMGASKRIMEMFLMRKSEQMAISTA-- 195 + S+ D +PV++ A+K+ E+ S + Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL 176 Query: 196 RFANVAFSDGS---LLHGFNQRIQKRQPIVAPND 226 RF V G L F + + + + I N Sbjct: 177 RFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNY 210
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.8 bits (66), Expect = 0.014 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Query: 44 VSSVGKFVDDFERKIETYTGAAKAVATVNGTAALHAAL----YMADVQRGDLVVTQALTF 99 + ++ K +D K+E ++ + N + + M+DV +G +V +Q T Sbjct: 60 LDTINKVTEDVSSKLEGVRESSLELVESNDAGVVKKFVGSMSLMSDVAKGTVVASQEATI 119 Query: 100 VATCNALYHMGAEPI 114 VA C+ + GA + Sbjct: 120 VAKCSGMVAEGANKV 134
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 46.5 bits (110), Expect = 1e-08 Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 26/187 (13%) Query: 9 ALSAISLGLCSFTASA----DFYAGALVSYSNAEYHHS---STSSVTEGNPFLLQAQAGY 61 A++ G + +A +Y GA + + ++YH + + + T N A GY Sbjct: 7 AIAVALAGFATVAQAAPKDNTWYTGAKLGW--SQYHDTGFINNNGPTHENQLGAGAFGGY 64 Query: 62 FFNDYVALEARY---GTSVQRESGLAVDSLASGF---VKLNMPVSERFALYGLAGYSSVQ 115 N YV E Y G + S A G KL P+++ +Y G + Sbjct: 65 QVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWR 124 Query: 116 IDQQN--VGSNKDQGFS--FGLGMHYALDKHNAVVFEFVDSTS-------EDQVRLSALT 164 D ++ G N D G S F G+ YA+ A E+ + + + L+ Sbjct: 125 ADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLS 184 Query: 165 LGFQHRF 171 LG +RF Sbjct: 185 LGVSYRF 191
>FLAGELLIN#Flagellin signature. Length = 507 Score = 150 bits (379), Expect = 5e-43 Identities = 79/354 (22%), Positives = 132/354 (37%), Gaps = 17/354 (4%) Query: 5 NTNVTAMMTQRHLGHAAEQNIESQRNLTSGYRINSASDDAAGLQISNTLNVQTRGLDVAL 64 NTN +++TQ +L + + L+SG RINSA DDAAG I+N +GL A Sbjct: 5 NTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAS 64 Query: 65 RNAHDAYSVAQTAEGALHESSDILQRLRSLGLQAANGSNDSSDRQSIQYEVVALQDELDR 124 RNA+D S+AQT EGAL+E ++ LQR+R L +QA NG+N SD +SIQ E+ +E+DR Sbjct: 65 RNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDR 124 Query: 125 VAITTTFADKNLFDGSYGSQSFHIGANANS-ISLTLRNMRSHIPEMGGQHYVG-DAVDKD 182 V+ T F + +GAN I++ L+ + + G + G Sbjct: 125 VSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVG 183 Query: 183 WRVTKDNQTLKLEYQDSKGKSQTEYIRLKLGDRIEQVATYINAQQSIVSASVTENSELQF 242 + + + T + + + + Sbjct: 184 DLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAEN 243 Query: 243 FASTLNAPEGVELKGSLADELDVTAGGLVTMDDIDMSTAGGAQLSIGVIDAAIKYVDSHR 302 + G+ AG + + D G +I Sbjct: 244 NTAVDLFKTTKSTAGTAEA--KAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDG------ 295 Query: 303 SEIGGFQNRISGTMDNLNTVNRSVTESKGRIRDTDFAREATEMVRSQVLQDATT 356 ++S T++ + G ++++ V + V+ T Sbjct: 296 ------NGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFT 343 Score = 100 bits (249), Expect = 3e-25 Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 19/216 (8%) Query: 177 DAVDKDWRVTKDNQTLKLEYQDSKGKSQTEYIRLKLGDRIEQ-VATYINAQQSIVSASVT 235 D + +V+ K+ + + + + + +N Q + + Sbjct: 291 TGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKN 350 Query: 236 ENSELQFFASTLNAPEGVELKGSLADELDVTAGGLVTMD------------------DID 277 E+++L + ++ + A+ AG VT+ + Sbjct: 351 ESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDA 410 Query: 278 MSTAGGAQLSIGVIDAAIKYVDSHRSEIGGFQNRISGTMDNLNTVNRSVTESKGRIRDTD 337 + + ID+A+ VD+ RS +G QNR + NL ++ ++ RI D D Sbjct: 411 AAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDAD 470 Query: 338 FAREATEMVRSQVLQDATTALLAQAKQRPSSALGLL 373 +A E + M ++Q+LQ A T++LAQA Q P + L LL Sbjct: 471 YATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 27.0 bits (59), Expect = 0.008 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 7/47 (14%) Query: 15 RRVKKNKGCAGVD----KLDIDATIF---KLRQASNGQRFARVFWME 54 RR+ + GC GVD +L D + F K S +R AR +W + Sbjct: 136 RRINRTYGCYGVDSSIMRLMSDYSRFPEVKELMESQMERLARPYWEK 182
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 753 bits (1947), Expect = 0.0 Identities = 281/571 (49%), Positives = 409/571 (71%), Gaps = 2/571 (0%) Query: 1 MISGILASPGIAIGKALLLQEDEIVLNTNTISDDQVEAEVARFFDARNKSAAQLETIKQK 60 I+GI AS G+AI KA + E + + +I+D V E+ + A KS +L IK + Sbjct: 4 KITGIAASSGVAIAKAFIHLEPNVDIEKTSITD--VSTEIEKLTAALEKSKEELRAIKDQ 61 Query: 61 ALETFGEEKEAIFEGHIMLLEDEELEEEILALIKNDKMTADHAIHSVIEEQACALESLDD 120 + G +K IF H+++L+D EL + I I+N++M A++A+ V + ES+D+ Sbjct: 62 TEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDN 121 Query: 121 EYLKERATDIRDIGSRFVKNALGINIVSLSDIDQEVILVAYDLTPSETAQINLDYVLGFA 180 EY+KERA DIRD+ R + + +G+ SL+ I +E +++A DLTPS+TAQ+N +V GFA Sbjct: 122 EYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFA 181 Query: 181 CDIGGRTSHTSIMARSLELPAIVGTNDITKQVKNGDMLILDAMNNKIVINPSDAELEEAK 240 DIGGRTSH++IM+RSLE+PA+VGT ++T+++++GDM+I+D + +++NP++ E++ + Sbjct: 182 TDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYE 241 Query: 241 AVKAAFLAEKEELAKLKDLHAETTDGHRVEVCGNIGTVKDCDGIIRNGGEGVGLYRTEFL 300 +AAF +K+E AKL + T DG VE+ NIGT KD DG++ NGGEG+GLYRTEFL Sbjct: 242 EKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFL 301 Query: 301 FMDRDALPTEEEQYQAYKEVAEAMNGEAVIIRTMDIGGDKDLPYMDLPKEMNPFLGWRAV 360 +MDRD LPTEEEQ++AYKEV + M+G+ V+IRT+DIGGDK+L Y+ LPKE+NPFLG+RA+ Sbjct: 302 YMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAI 361 Query: 361 RISLDRREILRDQLRGILRASAHGKLRIMFPMIISVEEIRELKQAIEEYKAELRAEGHAF 420 R+ L++++I R QLR +LRAS +G L++MFPMI ++EE+R+ K ++E K +L +EG Sbjct: 362 RLCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDV 421 Query: 421 DENIEIGVMVETPAAAAIAHHLAKEVAFFSIGTNDLTQYTLAVDRGNEMISHLYNPLSPA 480 ++IE+G+MVE P+ A A+ AKEV FFSIGTNDL QYT+A DR NE +S+LY P PA Sbjct: 422 SDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPA 481 Query: 481 VLTVIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSGISIPKVKKVIRNS 540 +L ++ VI A+H+EGKW GMCGE+AGDE A LLLG+GLDEFSMS SI + + Sbjct: 482 ILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKL 541 Query: 541 NFAEVKAMAEEALSLPTAAEIEAVVEKFIAE 571 + E+K A++AL L TA E+E +V+K + Sbjct: 542 SKEELKPFAQKALMLDTAEEVEQLVKKTYLK 572
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 28.8 bits (64), Expect = 0.028 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 2/65 (3%) Query: 124 EQVEPVLQEPAKAFAEKEEAAEVVEETLQPVFEAPLAAQAPEVEVAPVVVDPVVEEPKPE 183 V P EP +A E VVE +P +AP V P +P + Sbjct: 48 TMVTPADLEPPQAVQPPPE--PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKK 105 Query: 184 PEMQV 188 + Q Sbjct: 106 VQEQP 110
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.004 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 168 PPADLTAAMNAQMKAERNKRAEILEAEGVRQAEILRAEGQKQSEILKAEGEKQSAILHAE 227 + A + + + EI + A + +E AE KQ + + Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE-TVAENSKQESKTVEK 1053 Query: 228 ARERAAQAEAKATYMVSEAIAKGDVKA 254 + A + A+ + E AK +VKA Sbjct: 1054 NEQDATETTAQNREVAKE--AKSNVKA 1078
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 245 bits (627), Expect = 1e-83 Identities = 110/260 (42%), Positives = 153/260 (58%), Gaps = 2/260 (0%) Query: 14 NRSEFNGKLCLVTGAGQGIGLACAKSLLAQGARVIACDVTQLALDVFQQSLPKCQQSNTL 73 N GK+ +TGA QGIG A A++L +QGA + A D L+ SL K + + Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSL-KAEARHAE 60 Query: 74 LIPFDLADSNAIQTACHNLEQDQLIPDYIVTCAGTLQLESVLDLPLEALTKTLDVNLKGT 133 P D+ DS AI +E++ D +V AG L+ + L E T VN G Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 134 MLLTQQLAKILVKHSKQGAIVAVGSNAADTPRVKMSAYCTSKAGLHMWMQCLGLELAEHG 193 ++ ++K + + G+IV VGSN A PR M+AY +SKA M+ +CLGLELAE+ Sbjct: 121 FNASRSVSKYM-MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 194 IRCNIVSPGSTRTPMQEQMWNEAYGERETIQGNLASHRMGIPLNKIAETKDITNAIEFLL 253 IRCNIVSPGST T MQ +W + G + I+G+L + + GIPL K+A+ DI +A+ FL+ Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 254 SDKSGHITMHDLRVDGGATF 273 S ++GHITMH+L VDGGAT Sbjct: 240 SGQAGHITMHNLCVDGGATL 259
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.015 Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 45/215 (20%) Query: 261 KMPQDAREKTEQELQKLKMMSP---MSAEATV----------VRSYIDWMVSVPWNKRSK 307 MP + ++K + P MSA+ T Y+ P++ Sbjct: 56 VMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYL----PKPFDLTEL 111 Query: 308 VKKNLAKAEEILNEDHYGLERVKERILEYL-------AVQNRINKL---KGPILCLVGPP 357 + + +A LE + + + + + +L ++ + G Sbjct: 112 IG-IIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLM-ITGES 169 Query: 358 GVGKTSLGRSIAAATGRKYTRM------ALGGVRDEAEIRGHRRTYIGSLPGKLIQKMSK 411 G GK + R++ R+ A+ E+E+ GH + G+ G + + Sbjct: 170 GTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEK---GAFTGAQTRSTGR 226 Query: 412 VGVKN--PLFLLDEIDKMSSDMRGDPSSALLEVLD 444 LF LDEI M D + + LL VL Sbjct: 227 FEQAEGGTLF-LDEIGDMPMDAQ----TRLLRVLQ 256
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.6 bits (87), Expect = 6e-06 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 21/116 (18%) Query: 25 EEFVIPFLSFDGQEAMRNARKRDIEQATNTD--IYTSIKAIKNDEIIGYVA----WRQGN 78 E F P+ + M D+ + + IG + W Sbjct: 40 ERFSKPYFKQYEDDDM------DVSYVEEEGKAAFL---YYLENNCIGRIKIRSNWNGYA 90 Query: 79 YIAQLYVSSKYQKQGVGRGLI---TEMLKRSGASSIELKA-SVN--AVGFYQRLGF 128 I + V+ Y+K+GVG L+ E K + + L+ +N A FY + F Sbjct: 91 LIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 177 bits (451), Expect = 2e-54 Identities = 81/357 (22%), Positives = 147/357 (41%), Gaps = 39/357 (10%) Query: 5 MKILVINPGGMSTKIAVFN------------NGFLLFNKSISHSMA--ELECFETIFEQK 50 MKILVIN G S K + + + ++H+ +++ + + + K Sbjct: 1 MKILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDMKDHK 60 Query: 51 DFRKNLILKALKDEGIELDEIDQFVGRGGMVRNLQSGVYRINKDYLNDAAIGLNGQ---- 106 D K ++ + + + ++ + G R + G Y + + D + Sbjct: 61 DAIKLVLDALVNSDYGVIKDMSEIDAVGH--RVVHGGEYFTSSVLITDDVLKAITDCIEL 118 Query: 107 ----HASNLGGILADELAKKTHSN-KDAYTVDPVMVDEYEDIARFSGM----ADISRVRS 157 + +N+ GI + + + D D A + ++R Sbjct: 119 APLHNPANIEGI---KACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRK 175 Query: 158 --FHALNQKAVARRYSKEHDKPYDKVNLIVAHLGSGVSVGAHKLGRIIDVNSALGG-DGP 214 FH + K V++R ++ +KP + + +I HLG+G S+ A K G+ ID + +G Sbjct: 176 YGFHGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGL 235 Query: 215 MSPERAGGVPPLALIDMCFSGEYTYKEVYKKLIGEGGVYSYLG-TKDMLEVEKRH-NEGD 272 R+G + P + + + +EV L + GVY G + D ++E GD Sbjct: 236 AMGTRSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGD 295 Query: 273 EKASQVLEAMAYQVAKDIGASAAVLEGNVDAIILTGSIAYCEPMI-EWIAQRTQFVG 328 ++A L AY+V K IG+ AA + G VD I+ T I P I E+I +F+G Sbjct: 296 KRAQLALNVFAYRVKKTIGSYAAAM-GGVDVIVFTAGIGENGPEIREFILDGLEFLG 351
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 30.8 bits (69), Expect = 0.011 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%) Query: 258 NLITQYRAEGVNDMEFLEESVFAHEMGHLLGFNH-----DWMIS--SGAVQELLINNGHA 310 N + + A G++ + + V AHE+GH+LG H D M + +G + L N Sbjct: 333 NTASDFEASGMSTTQLMYPGVMAHELGHILGAEHTDNSKDLMYATFTGYLSHLSEKNMDI 392 Query: 311 FSKKIG 316 +K +G Sbjct: 393 IAKNLG 398
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 47.2 bits (112), Expect = 3e-07 Identities = 63/444 (14%), Positives = 136/444 (30%), Gaps = 90/444 (20%) Query: 265 TVDVVRDGRTIYTQSFLKGQHGISYKHLPRGNYNVEL---VIRADGYPEERITRRINNNV 321 V + ++G IY + G I+ + + +L + ADG +I ++V Sbjct: 310 QVTIKQNGYDIYNSTVPPGPFTIN--DIYAAGNSGDLQVTIKEADG--STQIFTVPYSSV 365 Query: 322 AQTSHKGY-DYNVTF-RESTYDSGDEGNNHLEEQLVYGDVSFTKSLF--------HDSVM 371 +G+ Y++T + ++ E + L++G + +++ + + Sbjct: 366 PLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHG-LPAGWTIYGGTQLADRYRAFN 424 Query: 372 VGVNSQSDGEDFGFGVLANYVSDWLDVGAYYNDIDDGRFFNG---------SLSVIGFNV 422 G+ G L+ +D+ + + D +G SL+ G N+ Sbjct: 425 FGIGKNMG----ALGALS------VDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNI 474 Query: 423 D---------------------YQDYDGSDKHSVTEISPLLRAVYGPE--SFDQTTLSYS 459 Y+ + V ++ P Y + L+ + Sbjct: 475 QLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVT 534 Query: 460 LPILD-SNISFYGSRVRYDGIGNSSGFESQNLALNYNTTIFRNMQLNLGFSRTLNDNANQ 518 + S + GS Y G N + NT F ++ L +S T N Sbjct: 535 QQLGRTSTLYLSGSHQTYWGTSNV----DEQFQAGLNTA-FEDINWTLSYSLTKNAWQKG 589 Query: 519 STDVDDIYSASITIPLGDNHT------------TYSSGLDSSSRTGQRLVNSLIYDKDKI 566 D + + ++ IP +YS D + R +D Sbjct: 590 R---DQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLED-- 644 Query: 567 ELIDGVDTSGNASLNNYIDGRQSEVSLNGRINMSNDKFNSSAYANVS-NSSNTNLSFNAE 625 + + S Y G G ++ +A S + L + Sbjct: 645 ---NNLSYSVQTG---YAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVS 698 Query: 626 STSIITKDNIYQTKENSESYVIVE 649 + + + + +++ V+V+ Sbjct: 699 GGVLAHANGVTLGQPLNDTVVLVK 722
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 31.2 bits (71), Expect = 0.039 Identities = 42/153 (27%), Positives = 57/153 (37%), Gaps = 51/153 (33%) Query: 1437 GFRASQDFGAIPKAIDGDALIVAE-----------TLNG---VEQ------------YHK 1470 + +D+G P AID L VA+ TLN VE YH Sbjct: 217 SLKLHEDWGTTPAAID-CCLSVADEYDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHT 275 Query: 1471 IGGGQGH---IYRIRSE-GIRGFSLNQNIEHNLNDLKVHLDL-----DLDESINPYIDRA 1521 G G GH I RI + + S N + +N L HLD+ L +I I A Sbjct: 276 EGAGGGHAPDIIRICGQPNVIPSSTNPTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFA 335 Query: 1522 DLMEEAHIELETVNRERHSRVKYMGPLNILNDM 1554 E+ I ET+ E +IL+D+ Sbjct: 336 ----ESRIRKETIAAE-----------DILHDI 353
>PF07675#Cleaved Adhesin Length = 1358 Score = 28.1 bits (62), Expect = 0.028 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%) Query: 33 DGVDISFRKTEQSEGKNIFSLYK--QKENNGTSYTFFPAKEGVEKGDWAY-VNHSSTRLD 89 DG D+ + S +++Y+ K G + T F ++GV G+ Y V T Sbjct: 520 DGTDMEV--EDDSPASYTYTVYRDGTKIKEGLTATTF-EEDGVAAGNHEYCVEVKYTAGV 576 Query: 90 AIDVCKNYTVGGKTWFLPSSGIITSAI 116 + VCK+ TV G F P + SA+ Sbjct: 577 SPKVCKDVTVEGSNEFAPVQNLTGSAV 603
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 39.3 bits (91), Expect = 7e-05 Identities = 61/371 (16%), Positives = 128/371 (34%), Gaps = 24/371 (6%) Query: 289 HQQLVSNKDAEDALMQYAMMLGSRINQENQALEQEEVQLTLQKEKVRSAKKACDDTLDKQ 348 + AL + L ++ + L + + L+ + K++ + D Sbjct: 70 KLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKAL 129 Query: 349 KTLQGEINALSRRQKKLADAVQKTTLIINQYDESETIESIVSGHREHLADKEQALALKQD 408 + A S + K L L + D + +E ++ A + A K Sbjct: 130 EGAMNFSTADSAKIKTLEAEKAA--LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 187 Query: 409 AEKRQAELEALKQEVGKLEEMEARYLTSVNAQEFKLFNQLPESVWMKLAAVNLEVAESNP 468 E RQAELE + ++ + ++ A++ L + + A+N A+S Sbjct: 188 LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAK 247 Query: 469 TRPLTLSEQQAIESFTDLLEEKEQHYTLWGLELEPIQLDNRESD--QIRLSKVQETLGRK 526 + L + +L + E + I+ E + + ++ Sbjct: 248 IKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVL 307 Query: 527 RKRMLDLNAMDSQSR------------FERVKDISTLEVEIKRTQNEINLLLAYTNDS-- 572 L SR E IS E + + +++ Sbjct: 308 NANRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS--EASRQSLRRDLDASREAKKQLEA 365 Query: 573 -HQLQETNKELADAEQ--VRDSLEKQVDAQKDLWEQEKHSYDAQTDKLTKKKQQLEKLTR 629 HQ E ++++A + +R L+ +A+K + E+ +++ L K ++LE+ + Sbjct: 366 EHQKLEEQNKISEASRQSLRRDLDASREAKKQV-EKALEEANSKLAALEKLNKELEESKK 424 Query: 630 YSVRVKAELQA 640 + + KAELQA Sbjct: 425 LTEKEKAELQA 435 Score = 36.2 bits (83), Expect = 7e-04 Identities = 31/298 (10%), Positives = 86/298 (28%), Gaps = 7/298 (2%) Query: 505 QLDNRESDQIRLSKVQETLGRKRKRMLDLNAMDSQSRFERVKDISTLEVEIKRTQNEINL 564 D + + + + + K + +I Sbjct: 86 HNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKT 145 Query: 565 LLAYTNDSHQLQETNKELADAEQVRDSLEKQVDAQKDLWEQEKHSYDAQTDKLTKKKQQL 624 L + L +L A + + A+ E EK + +A+ +L K + Sbjct: 146 L---EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 202 Query: 625 EKLTRYSVRVKAELQAHHLPVSDFSVLPDQTVDLSEETLHKRIESLNIKRQAKTDITERL 684 + L+A ++ ++ ++ + + K + R Sbjct: 203 MNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQ 262 Query: 685 QDFVREQVLENDDKLMLSHLDDELLEHAFHQLQTRYQGLDEEFDIL---RKHFIEHKHSV 741 + + + + + + LE L+ L+ + +L R+ + Sbjct: 263 AE-LEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDAS 321 Query: 742 HAIINELKNNREMVRQFEQSINRAFEGLVINDLSEVAAKIKVEARFDDLVNEIEFFDT 799 +L+ + + + + + + L + + AK ++EA L + + + Sbjct: 322 REAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEA 379 Score = 34.3 bits (78), Expect = 0.003 Identities = 37/317 (11%), Positives = 85/317 (26%), Gaps = 24/317 (7%) Query: 310 GSRINQENQALEQEEVQLTLQKEKVRSAKKACDDTLDKQKTLQGEINALSRRQKKLADAV 369 ++ + E E L L+ + KA D D+ L E++ + +K ++ Sbjct: 52 LEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDE---LTEELSNAKEKLRKNDKSL 108 Query: 370 QKTTLIINQYDESETIESIVSGHREHLADKEQALALKQDAEKRQAELEALKQEVGKLEEM 429 + I + + + + E A+ + LEA K Sbjct: 109 SEKASKIQELEARK---------ADLEKALEGAMNFSTADSAKIKTLEAEKAA-----LA 154 Query: 430 EARYLTSVNAQEFKLFNQLPESVWMKLAAVNLEVAESNPTRPLTLSEQQAIESFTDLLEE 489 + + F+ + L A + L + + Sbjct: 155 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIK 214 Query: 490 KEQHYTLWGLELEPIQLDNRESDQIRLSKVQETLGRKRKRMLDLNAMDSQSRFERVKDIS 549 + + E + + L Q+ E+ + + Sbjct: 215 TLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL--EARQAELEKALEGA 272 Query: 550 TLEVEIKRTQNEINLLLAYTNDSHQLQETNKELADAEQVRDSLEKQVDAQKDLWEQEKHS 609 + + L + + + R SL + +DA + + K Sbjct: 273 MNFSTADSAKIK-TLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASR----EAKKQ 327 Query: 610 YDAQTDKLTKKKQQLEK 626 +A+ KL ++ + E Sbjct: 328 LEAEHQKLEEQNKISEA 344
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 415 bits (1069), Expect = e-148 Identities = 212/346 (61%), Positives = 279/346 (80%) Query: 1 MSGEKTELPTPKKLRDARQKGQVAKSQEVVSSALILALIAVLFAFADYYMSHISALLLLP 60 MSGEKTE PTPKK+RDAR+KGQVAKS+EVVS+ALI+AL A+L +DYY H S L+L+P Sbjct: 1 MSGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIP 60 Query: 61 SELAYQGFQDALLDVAIAIAKEMVYLLAPILIVAALIAIMSNMGQFGLLFSGESVKPDIK 120 +E +Y F AL V + E YL P+L VAAL+AI S++ Q+G L SGE++KPDIK Sbjct: 61 AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120 Query: 121 KINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRGNLNTLLQIPTCGLECVPTIT 180 KINP+EGAKRIFS+KS++EF+KSILKV LLS +IW+ ++GNL TLLQ+PTCG+EC+ + Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 181 GVLVKQLMIISSVGFIVIAAADYAYQKFDHTKQLKMTKDEVKREYKEMEGSPEIKSKRRQ 240 G +++QLM+I +VGF+VI+ ADYA++ + + K+LKM+KDE+KREYKEMEGSPEIKSKRRQ Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 241 LHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAIAH 300 HQE+Q+ N R+NVKRS+V+V NPTHIAIG+ YK+GETPLP++T K TDA + + IA Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 301 EEGIPVMQKVPLARALYADGQLNQYIPGDLIEATAEILRWVASLEQ 346 EEG+P++Q++PLARALY D ++ YIP + IEATAE+LRW+ Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 346
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 157 bits (398), Expect = 3e-49 Identities = 52/249 (20%), Positives = 110/249 (44%), Gaps = 5/249 (2%) Query: 10 LFLYSLTLPRLMACFIFLPILNKQTLGGTLVRNGVLCSLALFIFPMINQQDLPAETDGIW 69 L LY L R++A PIL+++++ V+ G+ + I P + D+P + Sbjct: 13 LNLYFWPLLRVLALISTAPILSERSVPKR-VKLGLAMMITFAIAPSLPANDVPVFSFF-- 69 Query: 70 LMVILGKEVLLGMLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVLL 129 + + +++L+G+ +GF F A+ AG ++ Q G + A+ +P A ++ Sbjct: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 Query: 130 TQTLITLFFSGGGFVAFIYALFNSYSSWPVISFFPTVTEEWVRFFYAQFEQLMWLGVLMS 189 + LF + G + I L +++ + P+ + G++++ Sbjct: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPL--NSNAFLALTKAGSLIFLNGLMLA 187 Query: 190 APLVLAMFLAEFGLALISRFAPQLNVFSLAMPIKSAIASVLLIVYLALMMDHFQALFSDI 249 PL+ + L L++R APQL++F + P+ + L+ + L+ + LFS+I Sbjct: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 Query: 250 VLFREQLNT 258 + + Sbjct: 248 FNLLADIIS 256
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 62.9 bits (153), Expect = 5e-17 Identities = 32/73 (43%), Positives = 47/73 (64%) Query: 5 EIIHFTTQALTLVLFLSLPPILVAALVGTLVSLVQALTQVQEQTLGFVVKLIAVIITLFV 64 +++ +AL LVL LS P +VA ++G LV L Q +TQ+QEQTL F +KL+ V + LF+ Sbjct: 3 DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62 Query: 65 TTQWLGAELHSFA 77 + W G L S+ Sbjct: 63 LSGWYGEVLLSYG 75
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 251 bits (642), Expect = 3e-87 Identities = 97/217 (44%), Positives = 143/217 (65%), Gaps = 7/217 (3%) Query: 6 DELNLIVTLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIF 65 ++++LI LA L+PFI T FVK ++VF ++RNALG+QQIP NM L G+A++LS+F Sbjct: 3 NDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMF 62 Query: 66 IMAPVGFETYDYVTQHEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTL 125 +M P+ + Y Y +++ D S+ ++ GL YR++L K+ FF +A Sbjct: 63 VMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKR 122 Query: 126 WP-------QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLA 178 ++ D +E S+ LLPA+ +SE+ AF+IGF LYLPF+ +DL+VS++LLA Sbjct: 123 QYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLA 182 Query: 179 MGMMMVSPMTISLPFKLLLFVLLDGWTKLTHGLVLSY 215 +GMMM+SP+TIS P KL+LFV LDGWT L+ GL+L Y Sbjct: 183 LGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQY 219
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 84.3 bits (208), Expect = 9e-21 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 7/165 (4%) Query: 154 DTLPQAPSYL-----SQNIALPFWLSFGKTRLALSQFEQLELGDVVFFDDCYIAQHQVLL 208 + LP+ P+ L F + T+ +L ++ +GDV+ + Sbjct: 132 EHLPELPAVGGGRPKMLRWPLRFVIGSSDTQRSL--LGRIGIGDVLLIRTSRAEVYCYAK 189 Query: 209 QVSNHNLWRCQLDNTTLHIQEKETNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLN 268 ++ + N + TL IQ E N ++E L QLP++L F + ++ +TL +L Sbjct: 190 KLGHFNRVEGGIIVETLDIQHIEEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELE 249 Query: 269 ALQPGFTFELNQPISNPVTMRANGKIIGECELVNINERLGVRVLE 313 A+ L V + ANG ++G ELV +N+ LGV + E Sbjct: 250 AMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTLGVEIHE 294
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 26.8 bits (59), Expect = 0.044 Identities = 13/43 (30%), Positives = 25/43 (58%) Query: 60 KQKTVVLKELEILRQEIALLREREADLKQRAAEEKKALEQENQ 102 K + + ++ +L+ +I +RER D KQR ++E AL + + Sbjct: 374 KAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEK 416
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 295 bits (757), Expect = e-102 Identities = 96/292 (32%), Positives = 163/292 (55%), Gaps = 5/292 (1%) Query: 1 MSTINSQILTGNKFDAPIRSNLESSRTGASVNGNYRGETVRVHNAT-QSLFDAMEELTAL 59 M+T+++ + GN R + SS+ G +RGE+V++ + T QS+ D EE+T + Sbjct: 1 MTTLHN-LSYGNTPLHNERPEIASSQIVNQTLGQFRGESVQIVSGTLQSIADMAEEVTFV 59 Query: 60 GSEKAEKDLTKRKVKDGSIRVNEAHELVSDYLRKVPDLEKNQKIKDLATKMASGNLSTIA 119 SE+ E L KRK+ D RV++ E V+ YL KVP+LE+ Q + +L + +++ +++ Sbjct: 60 FSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNSPNISLS 119 Query: 120 QLQAYLNGFSEEKSHQYLALQAVKKFLGANPESKNLLALIDQAILTFEQNPDSWAQIDTE 179 QL+AYL G SEE S Q+ L ++ L PE +L L++QA+++ + + Sbjct: 120 QLKAYLEGKSEEPSEQFKMLCGLRDALKGRPELAHLSHLVEQALVSMAEEQGETIVLGAR 179 Query: 180 IRVSSFADEYSQEQGFSSLHQLRGFYRDTVHSYQGLGSAYKDVVERFGAKEVSTAVDFML 239 I ++ + S G + L LR YRD V YQG+ + + D+ +RF ++ + + F+ Sbjct: 180 ITPEAYRESQS---GVNPLQPLRDTYRDAVMGYQGIYAIWSDLQKRFPNGDIDSVILFLQ 236 Query: 240 QGMSADLSVQGSNIDSVKLQLLMSDMQKLKTLNTLQDQVSNLYQMFKPQQAN 291 + +SADL Q S KL +++SD+QKLK ++ DQV +Q F + N Sbjct: 237 KALSADLQSQQSGSGREKLGIVISDLQKLKEFGSVSDQVKGFWQFFSEGKTN 288
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 6e-04 Identities = 20/168 (11%), Positives = 59/168 (35%), Gaps = 17/168 (10%) Query: 162 WGELAEVIFADEFALYDFSLQA--EQLASTPAQDYAQAYEDLLQTWQGREAALGLESHQA 219 + L+ I ++ + + ++ ++ TWQ ++ + Sbjct: 153 YQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK-----EL 207 Query: 220 KYERAVALIPDGITESEREALIPDGITESEREALIQAFKQNYLSEQESEEIVAREQQVAE 279 ++ A + + +S + + +++ ++ +E + E Sbjct: 208 NLDKKRAER-LTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHA---VLEQENKYVE 263 Query: 280 QKQQVRDYQSELQQLESRLASQRATSHASWSDSEWQRYYQQEVADFRR 327 ++R Y+S+L+Q+ES + S + + ++ E+ D R Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEY------QLVTQLFKNEILDKLR 305
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 32.0 bits (72), Expect = 0.009 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 8/114 (7%) Query: 121 LATLNPTEYQEIVKKIDNYYALSNQAISDTQQQVLSALEQALDKV---FKKYPGDTLVQD 177 L+ + + QE+ +KIDN NQA+S+ + LEQ +DK+ K P + V+ Sbjct: 953 LSKVGLSRNQELAQKIDNL----NQAVSEAKAGFFGNLEQTIDKLKDSTKHNPMNLWVES 1008 Query: 178 TEKALAIL-AQLESKTRNSVVTLNDELIDLSSQQPTKQELKQLNLPIDQLIEDE 230 +K A L A+L++ NS + +N + + + + L Q N +L+ D+ Sbjct: 1009 AKKVPASLSAKLDNYATNSHIRINSNIKNGAINEKATGMLTQKNPEWLKLVNDK 1062
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 29.3 bits (65), Expect = 0.016 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 10/60 (16%) Query: 141 GTAHVNFSRSFAV--LSSDAEVH--VLEHELGHLAWAWHNDMPE----YWLKGQL--LSE 190 + +VN + F +S+ ++ V+ HELGH+ A H D + G L LSE Sbjct: 328 NSYNVNTASDFEASGMSTTQLMYPGVMAHELGHILGAEHTDNSKDLMYATFTGYLSHLSE 387
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.004 Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 20/219 (9%) Query: 223 REVREKWQSEAESTRQM--FAGKAAEYMGVDIKTILSTEAQVYEGQAAVDVGFANEVVNG 280 REV ++ +S ++ Q A +E T E +A V+ E Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQE---- 1121 Query: 281 LDAVQIMTEQFKKQQTTFDMGAAMTVQAEQQPVATGEQGNPQQAAAPATPQTPAEEQQPT 340 ++ ++ KQ+ + + E P ++ Q T Q PA+E Sbjct: 1122 --VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ-PAKETSSN 1178 Query: 341 PEQPQAS----------AHNDESTDPATKERERCMGIIGLEEAKGREALAQQLASNPKIS 390 EQP N E+T PAT + + + R ++ + + N + + Sbjct: 1179 VEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSV-RSVPHNVEPA 1237 Query: 391 VDEAKVLLASVPVSATAQNESALMALASEHGEPLGDDVG 429 + T+ N +A+++ A + + +VG Sbjct: 1238 TTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVG 1276
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 26.9 bits (59), Expect = 0.039 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 84 REIGFWLDDGTLFGVISEPNRTLNYKAAGGHCIQPFTLNL-------SALPSDSITVI 134 R+ L+D TLFGV E N+ A+ + P TLNL S SI +I Sbjct: 56 RQQPVTLNDFTLFGVSPEKNKAGALDASQMSNLPPSTLNLSLTGVMAGDDDSRSIAII 113
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 101 bits (252), Expect = 1e-27 Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 11/124 (8%) Query: 107 LRMENGIGFSSSSYQLDSSIHNTLRGVARILVEY--PDTSLVIDGYTDSTGSDSYNQTLS 164 +++ + F+ + L L + L D S+V+ GYTD GSD+YNQ LS Sbjct: 215 FTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLS 274 Query: 165 ERRAESVRQYLVSQKVAPGRAIARGYGERNPICSNQTSDGR---------ACNRRVEIQI 215 ERRA+SV YL+S+ + + ARG GE NP+ N + + A +RRVEI++ Sbjct: 275 ERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334 Query: 216 LPLK 219 +K Sbjct: 335 KGIK 338
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 50.5 bits (120), Expect = 2e-09 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 42/184 (22%) Query: 59 KDLEALEDFSVSGYQSANDYLR-------------------ATDTSTWGQYGKTTKKFIK 99 K ++AL +S GY N YLR +T+ + ++ +I Sbjct: 393 KQIQALRYYSAQGYSVINKYLRGDDYPETQAKETLLSRDYLSTNEPSDEEFKNAMSVYIN 452 Query: 100 QIRGAMSKLPE------YKGITYRGAWVKESLLNKLQVGDVVVEPAFTSSSAIPEVAKRF 153 I +S LPE Y+G+ + + L +G+++++ AF S+S P+ A Sbjct: 453 DIAEGLSSLPETDHRVVYRGLKLDKPALSDVLKEYTTIGNIIIDKAFMSTS--PDKAW-- 508 Query: 154 AITRPNSPQPLQRALYEIQIKS--NGRALGGLSEFGGEAEVLLPPNTYYKVTKIELNRGS 211 + + I ++ GR LG ++ F GEAE+L PPNT K+ I +N GS Sbjct: 509 ----------INDTILNIYLEKGHKGRILGDVAHFKGEAEMLFPPNTKLKIESI-VNCGS 557 Query: 212 AMLA 215 A Sbjct: 558 QDFA 561
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.0 bits (88), Expect = 8e-06 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Query: 135 RGKGIGKMLLQHAI-----KHLGAVKVDVNEQNPQAVGFYQRMGFKV 176 R KG+G LL AI H + ++ + N A FY + F + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 30.8 bits (69), Expect = 0.030 Identities = 13/42 (30%), Positives = 18/42 (42%) Query: 689 SENNKPVAHAGEDQSVLSGATITLSADKSTDADGDKLTYVWE 730 N +P A D SV+ I +S D DG+ Y W+ Sbjct: 770 HVNKEPKAVIKSDSSVIVEEEINFDGTESKDEDGEIKAYEWD 811
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 33.9 bits (77), Expect = 3e-04 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 14/101 (13%) Query: 27 NQPPIAVATSNLYELTGAGSISLSGAQSRDPNGDLLTFEWKQLSPSSPLADIASPTTEET 86 N+ P AV S+ + I+ G +S+D +G++ +EW D Sbjct: 772 NKEPKAVIKSD-SSVIVEEEINFDGTESKDEDGEIKAYEW----------DFGDGEKSNE 820 Query: 87 TVRFAEIAADTTYRFLLTVKD---GSLFDTSEVVVVQKAKV 124 + Y LTV D G ++ ++ VV+ V Sbjct: 821 AKATHKYNKTGEYEVKLTVTDNNGGINTESKKIKVVEDKPV 861
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 31.3 bits (71), Expect = 0.009 Identities = 25/180 (13%), Positives = 67/180 (37%), Gaps = 19/180 (10%) Query: 90 ELTTVFILASLTAAAVSY--LIVHHLIVRSVNNVLQKANKPLAESLAKYDVLEKLSLLIP 147 E+ + ++ +L+A + H + + +++ P +++L+ ++ + L Sbjct: 28 EVVSTALIVALSAMLMGLSDYYFEHFS-KLMLIPAEQSYLPFSQALSYV--VDNVLLEFF 84 Query: 148 IMVLDVFIPLAVGHYDWLAAIFDRILSISILVIFVWMIFALLDAMNDIATFKGITKKMPI 207 + + A I S + F+ A+ + I +G + I Sbjct: 85 YLCFPLLT----------VAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGAKRIFSI 134 Query: 208 KSFVQLIK--LFTFFVGVVVSMSILANESPVIFLSGLGVATGF--VMLVFKDTILGFVAG 263 KS V+ +K L + +++ + I N ++ L G+ + + + ++ G Sbjct: 135 KSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQILRQLMVICTVG 194
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 29.7 bits (66), Expect = 0.021 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 98 PTHDPDDPTGPIEDPSVLPDDSTNTFNKPDVEDEPDVEEPDTDESTD 144 P P P E+P+ P + N +P+ E +PD+ PD + TD Sbjct: 323 PNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDL-NPDANPDTD 368
>INTIMIN#Intimin signature. Length = 939 Score = 31.2 bits (70), Expect = 0.041 Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 267 GETLTDIAQQQGIALDTLQALNPHYSTSPLE 297 GET+ D+++ Q I L T+ +LN H +S E Sbjct: 70 GETVADLSKSQDINLSTIWSLNKHLYSSESE 100
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 71.2 bits (174), Expect = 7e-17 Identities = 54/194 (27%), Positives = 81/194 (41%), Gaps = 17/194 (8%) Query: 22 ETVLITGASRGIGLELTRQFLALGYSVISTYRGQPSMQLKSMLVNSSLTLHE----LEAT 77 + ITGA++GIG + R + G + + P K + + H + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAA-VDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 78 DETSIANLASKLSN--VQLDILINNAGVI---GSDEQSMEAIDPKEWLNTFAVNSIAPLM 132 D +I + +++ +DIL+N AGV+ S E EW TF+VNS Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDE-----EWEATFSVNSTGVFN 122 Query: 133 VSRALLGLLETSANPRIITVSSQMGALNRESYGMYAYRSSKAAVNKVMQVLALELKPKGI 192 SR++ + + I+TV S M AY SSKAA + L LEL I Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSN--PAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 193 VVCPIHPGWVKTDM 206 + PG +TDM Sbjct: 181 RCNIVSPGSTETDM 194
>DNABINDNGFIS#DNA-binding protein FIS signature. Length = 98 Score = 43.4 bits (102), Expect = 5e-09 Identities = 18/33 (54%), Positives = 24/33 (72%) Query: 48 LYSELMIHTRGNQTKAAKILGINRGNFSAKLKQ 80 L +M +TRGNQT+AA ++GINRG KLK+ Sbjct: 62 LLDMVMQYTRGNQTRAALMMGINRGTLRKKLKK 94
>SYCECHAPRONE#Gram-negative bacterial type III secretion SycE chaperone signature. Length = 130 Score = 25.8 bits (56), Expect = 0.050 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Query: 4 TFDHLVKHFFEKNGLENPTAQDGIYSLLIDQKYQLHFT-HQNEEWMVLYAELGEANPISE 62 +F+ + F++ L P + + + + + + H T H + ++ + N E Sbjct: 3 SFEQAITQLFQQLSLSIPDTIEPVIGVKVGE-FACHITEHPVGQILMFTLPSLDNNDEKE 61 Query: 63 QLAKSSIFGEYWPAQIVSHQENSA--VLWSQQPMAMLNVAALEAWTECFIQ 111 L +IF + I+S E VLW++QP+ L+ +L E +Q Sbjct: 62 TLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQ 112
>BACSURFANTGN#Yersinia/Haemophilus virulence surface antigen signature. Length = 322 Score = 156 bits (396), Expect = 4e-49 Identities = 81/210 (38%), Positives = 110/210 (52%), Gaps = 11/210 (5%) Query: 2 KVSQVTGSIKNAILKDTNTSGGCCEALSAHWMKARAEGSNLGEQLFQSGTASDKGKLNKE 61 K +Q G+ + I+K ++T+ G CEAL AHW+++ A+G +L +QL+ G KGK + Sbjct: 116 KFAQTKGAFLHKIIKHSDTASGVCEALCAHWIRSHAQGQSLFDQLYVGGR---KGKFQID 172 Query: 62 TMQSVAQLQTDGM-VGYDQEAITEGWLRSNNIESPYRELGALSR---VHGQTSRGRNGAA 117 T+ S+ QLQ DG DQ+ +T W + N I E L R V G T G Sbjct: 173 TLYSIKQLQIDGCKADVDQDEVTLDWFKKNGISERMIERHCLLRPVDVTGTTES--EGLD 230 Query: 118 ELAAKIVDNGPKTSLLKKIGLEGPSHAHAVAAAV-DGEKVTFFDPNFGEFSFPSKEDFTS 176 +L I+D KKI L G AHA+AA V + VTFFDPNFGEF F KE F Sbjct: 231 QLLNAILDTHGIGYGYKKIHLSGQMSAHAIAAYVNEKSGVTFFDPNFGEFHFSDKEKFRK 290 Query: 177 WFVQDFWHKSGYDLPKFGLSGEFSIVNLEA 206 WF FW S Y P G+ F ++ ++ Sbjct: 291 WFTNSFWGNSMYHYPL-GVGQRFRVLTFDS 319
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 58.3 bits (141), Expect = 2e-11 Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 14/193 (7%) Query: 40 GTIEKQAVAVGNIVPA-HSVSIKSQIDGIVGEMYVKVGEKVKQGQALIKVRPNPTPQALT 98 G +E A A G + + S IK + IV E+ VK GE V++G L+K+ Sbjct: 78 GQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTA-------L 130 Query: 99 DASTDLMRSEADLESAKQKLANLESLVKQDIIPNNYDEYVSARSAVKSAQANVLQKRQNL 158 A D +++++ L A+ + + L I N + + + + Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILS--RSIELNKLPELKLPDEPYFQNVSEEEVLRLT 188 Query: 159 ELIRSGEASIGDARLTSTIYAPIDGTVLNRKVEVGEPIISTESSQAATEMMSLADMNSLI 218 LI+ ++ + + ++ + I+ + + E L D +SL+ Sbjct: 189 SLIKEQFSTWQNQKYQKE----LNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLL 244 Query: 219 FKGSVSEHDAAQL 231 K ++++H + Sbjct: 245 HKQAIAKHAVLEQ 257 Score = 50.2 bits (120), Expect = 6e-09 Identities = 43/213 (20%), Positives = 78/213 (36%), Gaps = 29/213 (13%) Query: 95 QALTDASTDLMRSEADLESAKQKLANLESLVKQDIIPNNYDEYVSARSAVKSAQANVLQK 154 L + L + E+++ SAK++ + L K +I ++ N+ Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI-----------LDKLRQTTDNIGLL 314 Query: 155 RQNLELIRSGEASIGDARLTSTIYAPIDGTVLNRKV-EVGEPIISTESSQAATEMMSLA- 212 L A + + S I AP+ V KV G + A +M + Sbjct: 315 TLEL-------AKNEERQQASVIRAPVSVKVQQLKVHTEGGVV------TTAETLMVIVP 361 Query: 213 DMNSLIFKGSVSEHDAAQLSPGMPVLLTVAPYPDMEISGVLTKVAIQSENLNSPEGNATA 272 + ++L V D ++ G ++ V +P ++ KV + L++ E Sbjct: 362 EDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN--LDAIEDQRLG 419 Query: 273 KSFDNGFEVEVGELKIP-KEILLRSGFSSTAQI 304 F+ +E L K I L SG + TA+I Sbjct: 420 LVFNVIISIEENCLSTGNKNIPLSSGMAVTAEI 452
>PHPHLIPASEA1#Bacterial phospholipase A1 protein signature. Length = 289 Score = 110 bits (276), Expect = 8e-31 Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 21/238 (8%) Query: 55 SAHEDNYLLPFYTESKVNQARFTPTNPNAHDAKDVLVQFQISMKYKLL--VFGDDG-LFV 111 ++ NYL+ T S +N+ + + KD V+FQ+S+ + L + G + L Sbjct: 53 YPYDTNYLIYTQT-SDLNKEAIASYDWAENARKDE-VKFQLSLAFPLWRGILGPNSVLGA 110 Query: 112 AYTQRSNWEAYDD--SAYFRDDQYNPAIFY---------RWNLNPWRISLGFEHQSNGAG 160 +YTQ+S W+ + S+ FR+ Y P +F W L + +G+ H SNG Sbjct: 111 SYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLR--DVEMGYNHDSNGRS 168 Query: 161 GSDEVSWNRVYLDNKWRFESGFVRFKTWFDVGSNHYNPDIVDFLGYGELEAAWISENDHK 220 SWNR+Y + V K W+ VG+ NPDI ++GY +L+ + D Sbjct: 169 DPTSRSWNRLYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGY-HLGDAV 227 Query: 221 LNLTVSNLFTEGWEKGFYRASWNFPVYQGLRGYMKAETGYGLTISNYNFDESAFGVGF 278 L+ + G G ++P+ + +R Y + +GYG ++ +YNF+++ GVG Sbjct: 228 LSAKGQYNWNTG--YGGAELGLSYPITKHVRLYTQVYSGYGESLIDYNFNQTRVGVGV 283
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.8 bits (85), Expect = 6e-06 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Query: 15 CFGAFTESNQQIAFARLITDKATFAYLADVFVLPEFRGQGISKWLVSEIVSHPDLQGLRR 74 F + E N I ++ ++ +A + D+ V ++R +G+ L+ + + Sbjct: 67 AFLYYLE-NNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCG 125 Query: 75 VMLATRD----AHGLYEQYGFK 92 +ML T+D A Y ++ F Sbjct: 126 LMLETQDINISACHFYAKHHFI 147
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 138 bits (349), Expect = 3e-42 Identities = 86/251 (34%), Positives = 130/251 (51%), Gaps = 13/251 (5%) Query: 4 LEGKIALVTGASRGIGRAIAELLVERGATVIGTATSEGGAAAISEYLGENGK---GLALN 60 +EGKIA +TGA++GIG A+A L +GA + + + L + + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 VTDIESIEATLKTINDEFGAIDILVNNAGITRDNLLMRMKDDEWNDIINTNLTPIYRMSK 120 V D +I+ I E G IDILVN AG+ R L+ + D+EW + N T ++ S+ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 121 AVLRGMMKKRAGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTV 180 +V + MM +R+G I+ VGS + A YA++KA + FTK + E+A + N V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 181 APGFIETDMTKALNDDQRAATL----------SNVPAGRLGDPREIASAVVFLASPEAAY 230 +PG ETDM +L D+ A + +P +L P +IA AV+FL S +A + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 231 ITGETLHVNGG 241 IT L V+GG Sbjct: 246 ITMHNLCVDGG 256
>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature. Length = 293 Score = 560 bits (1445), Expect = 0.0 Identities = 274/293 (93%), Positives = 284/293 (96%) Query: 1 MNKWLVTSGVLMSLLSANSFASMGKRYVATPQQSQWEMVMNTPLECQLVHPIPGFGDAVF 60 MNKWL+TSGV++SLLSANS+A MGKRYVATPQQSQWEMV+NTPLECQLVHPIP FGDAVF Sbjct: 1 MNKWLITSGVMLSLLSANSYAVMGKRYVATPQQSQWEMVVNTPLECQLVHPIPSFGDAVF 60 Query: 61 SSHASKKINLDFELKMLRPMGETRNVSLISMPPPWRPGENADRITNLKFFKQFDGYVGGQ 120 SS ASKKINLDFELKM RPMGETRNVSLISMPPPWRPGE+ADRITNLKFFKQFDGYVGGQ Sbjct: 61 SSRASKKINLDFELKMRRPMGETRNVSLISMPPPWRPGEHADRITNLKFFKQFDGYVGGQ 120 Query: 121 TAWGILSELEKGRYPTFSYQDWQSRDQRIEVALSSVLFQNKYNVFSSCIANLLKYSFEDI 180 TAWGILSELEKGRYPTFSYQDWQSRDQRIEVALSSVLFQ+KYN FS CIANLLKYSFEDI Sbjct: 121 TAWGILSELEKGRYPTFSYQDWQSRDQRIEVALSSVLFQSKYNAFSDCIANLLKYSFEDI 180 Query: 181 AFTILHYERQGDQLTKASKKRLAQIADYVRHNQDIDLVLVATYTDSTDGKSTSQSLSERR 240 AFTILHYERQGDQLTKASKKRLAQIADYVRHNQDIDLVLVATYTDSTDGKS SQSLSERR Sbjct: 181 AFTILHYERQGDQLTKASKKRLAQIADYVRHNQDIDLVLVATYTDSTDGKSESQSLSERR 240 Query: 241 AESLRSYFESLGLSGERIQVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQV 293 AESLR+YFESLGL +RIQVQGYGKRRPIADNG+PIGKDKNRRVVISLGRTQV Sbjct: 241 AESLRTYFESLGLPEDRIQVQGYGKRRPIADNGTPIGKDKNRRVVISLGRTQV 293
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 30.3 bits (68), Expect = 0.010 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 3/48 (6%) Query: 120 IPPLLGVFAKLKL---DRRLVACVLTFGLITPYMVLPIGFGGIFLNNI 164 + L L R LV+ ++ G + P+ F +F++ + Sbjct: 105 MAHCLTSQCPNMLFPYARELVSSLVNRGTFPALNLSPVNFDALFMDYL 152
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 359 bits (922), Expect = e-125 Identities = 111/354 (31%), Positives = 189/354 (53%), Gaps = 14/354 (3%) Query: 8 ERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFSIMSRLFDL 67 E+TE+ TP++++ AR+KGQVA+SKE+ S ++++ + LM L+ F S+L + Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLM----GLSDYYFEHFSKLMLI 59 Query: 68 TRDEIFDTAKLFDIAFGAMTDLLFPLFLI--LITLFVAAMIGAAG---VGGISFSAEAAM 122 ++ + F A + D + F L VAA++ A G S EA Sbjct: 60 PAEQSYLP---FSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIK 116 Query: 123 PKLSKMNPLSGLKRMVGMQSWVELIKSILKVALVTGMAIYLIQASQADLIQLSMDVYPQN 182 P + K+NP+ G KR+ ++S VE +KSILKV L++ + +I+ + L+QL + Sbjct: 117 PDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQL-PTCGIEC 175 Query: 183 IFHAL-DILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKPEVK 241 I L IL +++ + +++ D F+ +Q+ +LKM+K E+K EYKE EG PE+K Sbjct: 176 ITPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIK 235 Query: 242 GRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIAKGTDHMAMKI 301 + R +E R M +V ++ V++ NP H ++ + YK+ P+V K TD + Sbjct: 236 SKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTV 295 Query: 302 REVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLKQYRK 355 R++A E + I+ PLARALY ++ IP A A+VL ++ + ++ Sbjct: 296 RKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQ 349
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 127 bits (321), Expect = 7e-38 Identities = 87/221 (39%), Positives = 131/221 (59%), Gaps = 2/221 (0%) Query: 9 LDWIANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVAPAIPAVPQDIELLS 68 L W+ YFWP R+ A++ + R V R++L L + ITFA+AP++PA D+ + S Sbjct: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFS 67 Query: 69 FRGFMTIAEQIVIGVAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQ 128 F +QI+IG+A+G QF G+I+G+Q L FA+ VDPA+ N P+L + Sbjct: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127 Query: 129 LFMFLATMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNAVDFREMASWLGIMFKTALSMS 188 + LA + FL +GHL ++ L+V +F TLPIG LN+ F + ++F L ++ Sbjct: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187 Query: 189 LSGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLL 229 L I LLT+NL+ G++ R APQL+IF +GF L VG+ L Sbjct: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISL 228
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 54.4 bits (131), Expect = 1e-13 Identities = 26/70 (37%), Positives = 39/70 (55%) Query: 7 VELFRDALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLLALMLFG 66 V AL++VLI+ I + +IGL+V +FQ T + EQTL F +L+ L L L Sbjct: 5 VFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLS 64 Query: 67 HWMTQMLMEY 76 W ++L+ Y Sbjct: 65 GWYGEVLLSY 74
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 284 bits (728), Expect = 7e-99 Identities = 113/229 (49%), Positives = 165/229 (72%), Gaps = 1/229 (0%) Query: 60 MSVGNGGGIPAFTMTTNADGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSIL 119 ++ +P T G + +S+ +Q L +T L F+PA++++MTSFTRI++V +L Sbjct: 15 ITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLL 74 Query: 120 RQAMGLQQTPSNQVIIGIALFLTFFVMSPVLNEINDNAIQPYLNEQVTARQAFDAAQVPM 179 R A+G P NQV++G+ALFLTFF+MSPV+++I +A QP+ E+++ ++A + P+ Sbjct: 75 RNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPL 134 Query: 180 KAFMLKQTRIKDLETFVNMSGE-QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFL 238 + FML+QTR DL F ++ + PE V M +L+PA++TSELKTAFQIGF +F+PFL Sbjct: 135 REFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFL 194 Query: 239 IIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 IIDLV+ASVLMA+GMMM+ P ++LPFKLMLFVLVDGW L++ +LA SF Sbjct: 195 IIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 114 bits (287), Expect = 6e-36 Identities = 63/135 (46%), Positives = 91/135 (67%), Gaps = 8/135 (5%) Query: 3 PSDDQK--LADEWAAALGEDPSAPSIDVDEVLAAPLEELKDTSSPITDDERRKLDTIMDI 60 PSD+ L D WA AL E + + + + L D S + D +D IMDI Sbjct: 7 PSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGG-GDVSGAMQD-----IDLIMDI 60 Query: 61 PVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGI 120 PV +++E+GR++++I+ LL+L QGSVV LD LAGE LD+L+NG LIA GEVVVV DK+G+ Sbjct: 61 PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120 Query: 121 RLTDVISQTERIKKL 135 R+TD+I+ +ER+++L Sbjct: 121 RITDIITPSERMRRL 135
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 248 bits (634), Expect = 2e-82 Identities = 85/327 (25%), Positives = 161/327 (49%), Gaps = 9/327 (2%) Query: 1 MTDLLSQDEIDALLHGVD--DVDDVDEPMDAGDESAVSFDFSSQDRIVRGRMPTLELINE 58 MT++LSQDEID LL + D D + +DF D+ + +M TL L++E Sbjct: 1 MTEVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHE 60 Query: 59 RFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITME 118 FAR SL LR V + V + + E+ ++ P++L ++ PLKG A++ ++ Sbjct: 61 TFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVD 120 Query: 119 ARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVEFEY 178 + F +++ FGG G+ R+ T E +++ ++ + + +E+W+ V+ + Sbjct: 121 PSITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRL 178 Query: 179 LDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAG--VQSD 236 E NP A IV P+E++V+ + +V G + +PY +EPI L + S Sbjct: 179 GQIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSV 238 Query: 237 KMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDVIPIE---MPEHATMF 293 + + ++ LR+++ ++ + +S+RD++ L+ GD+I + + + + Sbjct: 239 RRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLS 298 Query: 294 IEDLPTYRVKMGRSEDKMAVQISEEIE 320 I + + + G K+A QI E IE Sbjct: 299 IGNRKKFLCQPGVVGKKIAAQILERIE 325
>PilS_PF08805#PilS N terminal Length = 185 Score = 26.8 bits (59), Expect = 0.036 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 13 KGKSKLLIIIIAVVVLLLGGGSAAFFLMGSDEPAQAAQAEQTQAQTAAA 61 KG + + ++++ V+++L A+ L + + EQ T A Sbjct: 26 KGATLMEVLLVVGVIVVLAAS--AYKLYSMVQSNIQSSNEQNNVLTVIA 72
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 45.6 bits (107), Expect = 5e-07 Identities = 27/117 (23%), Positives = 60/117 (51%) Query: 555 AEKVQMMMSKNLKNLDIRLDPPELGRMQIRMTMNNDLANVHFTVANPQARDLIEQTLPRL 614 ++ + + + ++ ++RL P +LG +QI + ++++ A + + R +E LP L Sbjct: 245 SQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPVL 304 Query: 615 REMLAQQGMQLADSSVQQQSSGQQQSGYANAEQNGQGSQGRGFSGQSDENFDADTNL 671 R LA+ G+QL S++ +S QQ + +Q+ + + +G+ D+ +L Sbjct: 305 RTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTANHEPLAGEDDDTLPVPVSL 361
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 39.8 bits (92), Expect = 7e-07 Identities = 31/144 (21%), Positives = 75/144 (52%) Query: 2 NNAMEFLLEQAKEREDQAVLALNKARSELDDYYRQVEQIEKYRLDYCQQLVDRGMAGLTA 61 + A+ L + A++ + A L + R Q++ + Y+ +Y L AG+T+ Sbjct: 4 HGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAGITS 63 Query: 62 SQYGHLNRFLTQLDETLSKQKQAENHFKEQVVNCQDYWLNMRKERMSYEWMIEKREKEKQ 121 +++ + +F+ L++ +++ +Q N + ++V + W ++ +++ + E++ Sbjct: 64 NRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQSTAAL 123 Query: 122 MAEAKREQKQMDEFSTLLYSRKPQ 145 +AE + +QK+MDEF+ RKP+ Sbjct: 124 LAENRLDQKKMDEFAQRAAMRKPE 147
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 180 bits (459), Expect = 2e-56 Identities = 80/345 (23%), Positives = 142/345 (41%), Gaps = 35/345 (10%) Query: 1 MKVLVTGGMGYIGSHTCVQMIEAGMEPIIVDNLCNAKVEVL--SRIEALTGKQPAFYQGD 58 MK LVTG G+IG H +++EAG + + +DNL + L +R+E L F++ D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 59 IRDEAFWDSVFAKHDIQAVIHFAGLKAVGESVAKPLEYYDNNVNGSLVLARSMLKAGVKS 118 + D +FA + V AV S+ P Y D+N+ G L + ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 119 IVFSSSATVYGDPDIVPITEDSPTGATTNPYGRSKYMVEECLSDLFNAENDWSVTLLRYF 178 ++++SS++VYG +P + D + Y +K E ++ ++ T LR+F Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATK-KANELMAHTYSHLYGLPATGLRFF 179 Query: 179 NPVGAHPSGTMGEDPQGIPNNLMPFIAQVAVGRREKLSVYGNDYPTPDGTGVRDYIHVMD 238 G P G P ++ F A+ + + VY G RD+ ++ D Sbjct: 180 TVYG----------PWGRP-DMALFKFTKAMLEGKSIDVYN------YGKMKRDFTYIDD 222 Query: 239 LADGHIAALKSVGEK---------------AGLHIYNLGTGKGSSVLEMVEAFATACGNP 283 +A+ I + A +YN+G +++ ++A A G Sbjct: 223 IAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIE 282 Query: 284 VPYELCPRRPGDIAECWASTDKAERDLGWKATRSVAEMTADTWKW 328 + P +PGD+ E A T +G+ +V + + W Sbjct: 283 AKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 96.2 bits (239), Expect = 1e-25 Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 107 VTDKGKLIARVHFAFDRFNLTPLARDVLSSVARQLAQT---DYQVTVEGHTDWIGTKAYN 163 T L + V F F++ L P + L + QL+ D V V G+TD IG+ AYN Sbjct: 211 QTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYN 270 Query: 164 QTLGHNRAKSTARELHYYGVSEQKTTLKSFGESEPIATNNTSSGRSKNRRADVYIP 219 Q L RA+S L G+ K + + GES P+ N + + + D P Sbjct: 271 QGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAP 326
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 75.7 bits (186), Expect = 4e-16 Identities = 69/313 (22%), Positives = 112/313 (35%), Gaps = 77/313 (24%) Query: 400 IMGHVDHGKTSTLDYIRRTHVASGEAG------------------GITQHIGAYHVETDN 441 ++ HVD GKT+ + + A E G GIT G + +N Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 442 GMITFLDTPGHAAFTAMRARGAQATDIVVLVVAADDGVMPQTVEAIQHAKAAGVPLIVAV 501 + +DTPGH F A R D +L+++A DGV QT + G+P I + Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 502 NKIDKEDANPD----NVKNELAQYDVI-----------------PEEWG----------- 529 NKID+ + ++K +L+ VI E+W Sbjct: 128 NKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLE 187 Query: 530 ---------------GENMFV---------HISAKQGTNIDGLLEAILLQSEVLELTAVA 565 E++ H SAK ID L+E I ++ T Sbjct: 188 KYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVIT--NKFYSSTHRG 245 Query: 566 EGMASGVVVESRLDKGRGPVATVLVQSGTLNKGDIVL-CGQEYGRVRAMRDELGKEITEA 624 + G V + + R +A + + SG L+ D V +E ++ M + E+ + Sbjct: 246 QSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSINGELCKI 305 Query: 625 GPSIPVEILGLSG 637 + EI+ L Sbjct: 306 DKAYSGEIVILQN 318
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 59.6 bits (144), Expect = 3e-13 Identities = 26/208 (12%), Positives = 69/208 (33%), Gaps = 20/208 (9%) Query: 4 IAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDL 63 +A++ + +Q ++++AL +F+++G+ +IA+ A V+ ++ +F + DL Sbjct: 1 MARKTKQEAQE--TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDL 58 Query: 64 VDEVLNHVVRQFSNFLSDNIDLDIHARENIANITNAMIELVSQDCH------WLKVWFEW 117 E+ + + ++ + +I ++ +++ F Sbjct: 59 FSEIWELSESNIGELELEYQAKF--PGDPLSVLREILIHVLESTVTEERRRLLMEIIFHK 116 Query: 118 SASTRDEVWPLFVTTNRTNQLLVQNMFI----KAIERGEVCDQHEPEHLANLFHGICYSI 173 + + R L + IE + A + G + Sbjct: 117 CEFVGE--MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174 Query: 174 FVQANRSKSEAELTN----LVSAYLDML 197 + +L V+ L+M Sbjct: 175 MENWLFAPQSFDLKKEARDYVAILLEMY 202
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 7e-04 Identities = 50/281 (17%), Positives = 90/281 (32%), Gaps = 28/281 (9%) Query: 26 DKVEEEQSLITVEGDKASMEVPASQAGIVKEIKVAEGDSVTTGSLIMIFEAEAAGAPGAA 85 + V +T G S E+ + IVKEI V EG+SV G +++ A A A Sbjct: 81 EIVATANGKLTHSGR--SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLK 138 Query: 86 AAAPAPAAEAAPVAAPAPAAAAELKEVHVPDIGGDEV--EVTEIMVAVGDSIEEEQSLLT 143 + A + + EL ++ + + V+E V S+ +EQ T Sbjct: 139 TQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQ-FST 197 Query: 144 VEGDKASMEVPAPFAGTLKEIKVAAGDKVTTGSLIMVFETAGSGAAAAPAAV---EAPAA 200 + K E+ + +A ++ S + + A+ Sbjct: 198 WQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQ 257 Query: 201 PAAAPAAAADKEVNVPDIGGDEVEVTEVMV-------------------AVGDTVEEEQS 241 A + V + E E+ + Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLE 317 Query: 242 LITVEGDKASMEVPAPFAGTVKEIKIAA-GDKVTTGSLIMV 281 L E + + + AP + V+++K+ G VTT +MV Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMV 358
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 151 bits (384), Expect = 3e-41 Identities = 102/452 (22%), Positives = 179/452 (39%), Gaps = 87/452 (19%) Query: 1 MKHIRNFSIIAHIDHGKSTLSDRLIQVCGG---LSDREMAAQVLDSMDLERERGITIKSQ 57 MK I N ++AH+D GK+TL++ L+ G L + D+ LER+RGITI++ Sbjct: 1 MK-IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTG 59 Query: 58 SVTLNYTAKDGETYQLNFIDTPGHVDFAYEVSRSLAACEGALLVVDAGQGVEAQTLANCY 117 + + E ++N IDTPGH+DF EV RSL+ +GA+L++ A GV+AQT + Sbjct: 60 ITSFQW-----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 118 TAIEMDLEVVPILNKIDLPAADPERVAEEIEEIVGIDAMEATRCSAKTGIGV-------- 169 +M + + +NKID D V ++I+E + + + + + V Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQ 174 Query: 170 --------DDVLENIVSAIPAPEGDPDAPLQALIID------------------------ 197 DD+LE +S + + + Sbjct: 175 WDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVI 234 Query: 198 -SWF--------------------DNYLGVVSLVRIKNGSLKKNDKIKVMSTGQTWGVDR 236 + F ++ +R+ +G L D +++ S + + Sbjct: 235 TNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI-SEKEKIKITE 293 Query: 237 LGIFTP-KQVDTDVLRTGEVGWVVCGIKDILGAPVGDTLTLAKNGS-EKPLPGFKKVKPQ 294 + + D +GE+ ++ L + +GDT L + E PLP + Sbjct: 294 MYTSINGELCKIDKAYSGEIV-ILQNEFLKLNSVLGDTKLLPQRERIENPLPLLQTT--- 349 Query: 295 VYAGLFPVSSDDYENFRDALGKLSLNDASL-FYEPENSAALGFGFRCGFLGMLHMEIIQE 353 + P E DAL ++S +D L +Y + + FLG + ME+ Sbjct: 350 ----VEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIIL----SFLGKVQMEVTCA 401 Query: 354 RLEREYDLDLITTAPTVVY-EVEQTNGETMYV 384 L+ +Y +++ PTV+Y E E Sbjct: 402 LLQEKYHVEIEIKEPTVIYMERPLKKAEYTIH 433 Score = 35.6 bits (82), Expect = 7e-04 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 398 EIREPISRCNILVPADYLGNVITLCVEKRGVQVDMVYHGNQVAITYDIPMAEVVLDFFDR 457 E+ EP I P +YL T + VD N+V ++ +IP + ++ Sbjct: 534 ELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARC-IQEYRSD 592 Query: 458 LKSTSRG 464 L + G Sbjct: 593 LTFFTNG 599
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.8 bits (72), Expect = 0.002 Identities = 11/48 (22%), Positives = 20/48 (41%) Query: 213 PQTRGHGLAKRIVALSLQLAKQFGYQQCYLETTECLREAVGLYEKLGF 260 R G+ ++ +++ AK+ + LET + A Y K F Sbjct: 99 KDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 421 bits (1084), Expect = e-148 Identities = 147/411 (35%), Positives = 226/411 (54%), Gaps = 11/411 (2%) Query: 1 MSKLYVGSEVGQLRRVLLNRPERALTHLTPSNCHELLFDDVLAVEAAGEEHDAFARTLRE 60 ++ + + SE+G+L++VLL+RP L +LTP LFDD+ +E A +EH+ FA L+ Sbjct: 5 LNPINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKN 64 Query: 61 QDVEVLLLHDLLVETLAVPEA-KQWLLNTQISDFRYGPTFARD-LRQYFAEMDDEHLASI 118 VE+ + DL+ E L A + ++ I + F + L+ YF+ + +++ S Sbjct: 65 NLVEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSSLTIDNMISK 124 Query: 119 LLGGLAYSELPIKSSSMLPKMKRPLDFVIEPLPNHLFTRDTSCWVYGGVSLNPMMMPARQ 178 ++ G+ EL +SS+ + F+I+P+PN LFTRD + GV++N M RQ Sbjct: 125 MISGVVTEELKNYTSSLDDLVNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTKVRQ 184 Query: 179 RETNHLRAIYRWHPTFAGQDFINYFGDEDQHYDNANVEGGDVLVIGKGAVLIGMSERTTP 238 RET I+++HP + + + ++ A++EGGD LV+ KG ++IG+SERT Sbjct: 185 RETIFAEYIFKYHPVYKE-NVPIWLNRWEE----ASLEGGDELVLNKGLLVIGISERTEA 239 Query: 239 QGVENLAASLFK-SGQAKEVIAIDLPKHRSCMHLDTVMTHMDVDTFSVYPEIMRKDLDTW 297 + VE LA SLFK ++A +PK+RS MHLDTV T +D F+ + + Sbjct: 240 KSVEKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSDD-MYFSIY 298 Query: 298 RLTPKGNG-EMH-VEASHNYLHAIESALGLDQLKIITTGGDSYEAEREQWNDANNVLTVK 355 LT + ++H + + LG I GGD REQWND NVL + Sbjct: 299 VLTYNPSSSKIHIKKEKARIKDVLSFYLGRKIDIIKCAGGDLIHGAREQWNDGANVLAIA 358 Query: 356 PGVVIGYERNVYTNEKYDKAGIEVLTIPGNELGRGRGGARCMSCPIERDDI 406 PG +I Y RN TN+ +++ GI+V IP +EL RGRGG RCMS P+ R+DI Sbjct: 359 PGEIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 210 bits (537), Expect = 5e-73 Identities = 79/152 (51%), Positives = 112/152 (73%), Gaps = 2/152 (1%) Query: 9 AEAAPQDAQQNFAIQRIFLKDVSFEAPNSPVMFQKEWNPDVKLDLDTQSRELGEGVYEIV 68 A Q IQRI++KDVSFEAPN P +FQ++W P + DL T+++++G+ +YE+ Sbjct: 9 AADTQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQVGDDLYEVC 68 Query: 69 LRLTV--TVKNEEETAFLCEVQQGGIFTAEKMEAGQLAHCLGAFCPNILFPYARETISSL 126 L ++V T+++ + AF+CEV+Q G+FT +E Q+AHCL + CPN+LFPYARE +SSL Sbjct: 69 LNISVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPYARELVSSL 128 Query: 127 VVKGTFPQLNLAPVNFDALFMNYLQQQAQQGE 158 V +GTFP LNL+PVNFDALFM+YLQ+Q Q + Sbjct: 129 VNRGTFPALNLSPVNFDALFMDYLQRQEQAEQ 160
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.0 bits (96), Expect = 6e-06 Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 17/129 (13%) Query: 35 AASQQELKGVSSEINRQKKSLTSQEKQLNDLQKSLKNQELGISKL---EREIKQTKTDLA 91 + E V + INR + ++ +L+D L Q + + E + + +L Sbjct: 210 DKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELR 269 Query: 92 QADQNINKLEEKIALQEAQRQAQEEELKQLLQTYYVTERAKANGHLLNEGVEEDRISQYF 151 + ++E +I + + Q + K + + + D I Sbjct: 270 VYKSQLEQIESEILSAKEEYQLVTQLFKNEIL----DKLRQT----------TDNIGLLT 315 Query: 152 QHLAKARAK 160 LAK + Sbjct: 316 LELAKNEER 324 Score = 36.7 bits (85), Expect = 1e-04 Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 30/232 (12%) Query: 26 SATYPLTSSAASQQELKGVSSEINRQKKSLTSQEKQLNDLQKSLKNQELGISKLEREIKQ 85 L + Q + +S I K + S + S ++ + Sbjct: 138 KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFST 197 Query: 86 TKTDLAQADQNINKLEEKIALQEAQRQAQEEELKQLLQTYYVTERAKANGHLLNEGVEED 145 + Q + N++K + A+ E VE+ Sbjct: 198 WQNQKYQKELNLDKKRAERLTVLARINRYENLS----------------------RVEKS 235 Query: 146 RISQYFQHLAKARAKVIDAITQTTQELAHNKNQLELEKAQIETLLKQQSEKRSSLAS-TQ 204 R+ + L +A A+ + + N+L + K+Q+E + + + TQ Sbjct: 236 RLDDF-SSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQ 294 Query: 205 SQRKGTLNKIQKSIKDDKRYLAELQRNETRLKAEIAKAAKRNAVPMDGIAKQ 256 + L+K++++ + EL +NE R +A + +A P+ +Q Sbjct: 295 LFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRA------PVSVKVQQ 340
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.5 bits (154), Expect = 1e-14 Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 3/114 (2%) Query: 1 MKTRDKIVYAALELFNQHGERNITTNHIADHIEISPGNLYYHFRNKQEIVREIFALYSAE 60 +TR I+ AL LF+Q G + + IA ++ G +Y+HF++K ++ EI+ L + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 61 LLERF--TPIQGSQESLTMLKSYLDSIFTLMWKYRFFYANLPEILSRDEQLHDE 112 + E + + L++L+ L + L EI+ + E Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEE-RRRLLMEIIFHKCEFVGE 122
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 29.7 bits (67), Expect = 0.015 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 60 GPGYADGSKLFFMTSPEFHMKRLLAAGSGCIYQINKAFRNEENGRHHNPEFTMLEWYRIG 119 G G A G+ T +H+ R++ A + +N AF + N M+ Sbjct: 160 GTGPAHGTLATTCTPGPWHIARMIEAADA--FPMNLAFAGKGNASLPGALVEMVLGGATS 217 Query: 120 FDHH 123 H Sbjct: 218 LKLH 221
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 827 bits (2137), Expect = 0.0 Identities = 317/1033 (30%), Positives = 531/1033 (51%), Gaps = 30/1033 (2%) Query: 5 DVFIKRPVLAVSISFLIALLGLQAVFKMQVREYPEMTNTVVTVTTSYYGASADLIQGFIT 64 + FI+RP+ A ++ ++ + G A+ ++ V +YP + V+V+ +Y GA A +Q +T Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 QPLEQAVAQADNIDYMTSSSV-LGTSTITVNMKLNTDPNAALSDILAKTNSVRSQLPKEA 123 Q +EQ + DN+ YM+S+S G+ TIT+ + TDP+ A + K LP+E Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 EDPTVTMSTGSTTAVLYIGFTSDELSSSQ--ITDYLERVINPQLFTVNGVSKVDLYGGMK 181 + +++ S++ ++ GF SD ++Q I+DY+ + L +NGV V L+G + Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-Q 181 Query: 182 YALRVWLDPAKMGALKLTATDVMTVLNANNYQSATGQATGEFVL------YNGSADTQVS 235 YA+R+WLD + KLT DV+ L N Q A GQ G L + A T+ Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 NVAELEALVVKTG-EGDVIRLGDIAKVTLEKSHDIYRANANGQEAVVAAINAAPSANPIN 294 N E + ++ +G V+RL D+A+V L + A NG+ A I A AN ++ Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 295 ISADVLKLLPQLERNLPSNIKMNVMYDSTIAINESIHEVVKTILEAAVIVLVVITLFLGS 354 + + L +L+ P +K+ YD+T + SIHEVVKT+ EA ++V +V+ LFL + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 355 FRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIK 414 RA +IP + +P+ L+G ++ A G+S N +T+ MVLAIGL+VDDAIVV+ENV+R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 415 EGESPFRAAII-GTREIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGAVFVS 473 E + P + A +I ++ + + L AV+ P+A GG TG+++++F++T+ A+ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 474 GIIALTLSPMMCSKMLRAN-----EEPSKFEQKVHHVLDGMTNRYAKMLTAVMAHRPVII 528 ++AL L+P +C+ +L+ E F + D N Y + ++ + Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 529 AFAIIVFTTLPILFKFIPSELAPSEDKGVVVLMGTAPSNANLDYIEHTMRDVNKILSNQP 588 ++ + +LF +PS P ED+GV + M P+ A + + + V Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 589 EVEYAQVFN------GVPNSNQAFGLATLKPWSER---EASQADITKRVGELVSHVPGMS 639 + VF N +LKPW ER E S + R + + Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 640 VTAFQMPE--LPGAGSGLPIQFVITTPNSFESLFTIASDILADVSTSPLFVYS-DLDLNY 696 V F MP G +G + + ++L + +L + P + S + Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 697 DSATMKISIDKDKAGAYGVTMQDIGVTLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLN 756 D+A K+ +D++KA A GV++ DI T+ST + YVN GR ++ Q + K+R+ Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 757 PESMKNYYVRSVDGKAVPLGSLITIDVVAEPRSLPHFNQLNSATVGAVPSPGVAMGDAIN 816 PE + YVRS +G+ VP + T V L +N L S + +PG + GDA+ Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 817 WFEDVAQNKLPSGYNHDYMGEARQFVTEGSALYATFGLALAIIFLVLAIQFESIRDPIVI 876 E++A +KLP+G +D+ G + Q G+ A ++ ++FL LA +ES P+ + Sbjct: 842 LMENLA-SKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 877 MVSVPLAVCGALIALAWGTASMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRI 936 M+ VPL + G L+A ++Y VGL+T +GL K+ ILI E AK+ + Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 937 DAVMEAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTLFTLFV 996 +A + A ++RLRPILMT+ A I G++PL + GAG+ + ++GI ++ G+ TL +F Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 997 LPVIYSYLAEKHK 1009 +PV + + K Sbjct: 1021 VPVFFVVIRRCFK 1033
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 56.0 bits (135), Expect = 8e-11 Identities = 42/190 (22%), Positives = 73/190 (38%), Gaps = 21/190 (11%) Query: 101 DSDVEKANLQSSQARLPAAKAKYKRYQGLFKKGSVSKEAYDEAEANYFSLKADIESLKAT 160 + V K+ L+ ++ + +AK +Y+ LFK + K + N L ++ + Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR--QTTDNIGLLTLELAKNEER 324 Query: 161 IDRREIKAPFTGVVGIRNVY-LGQYLQAGT---DIVRLEDTSVMRLGFTVSQTDISRIKL 216 I+AP + V V+ G + IV +DT + V DI I + Sbjct: 325 QQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTAL--VQNKDIGFINV 382 Query: 217 DQEVDIFVDAYPDK---PFKGSISAIEPAV-------NVQSGLIQVQADIPNSDGK---L 263 Q I V+A+P G + I V + +I ++ + ++ K L Sbjct: 383 GQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPL 442 Query: 264 RSGMFARANI 273 SGM A I Sbjct: 443 SSGMAVTAEI 452 Score = 41.7 bits (98), Expect = 3e-06 Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 71 TVANETSGVIDKISFESGTQVDTGQSLIHLDSDVEKANLQSSQARLPAAKAKYKRYQGL 129 + + ++ +I + G V G L+ L + +A+ +Q+ L A+ + RYQ L Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQIL 156
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 64.3 bits (156), Expect = 4e-15 Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 7 RKDKREQIVIAAERLIAESGFQGLSMQKLADEAGVAAGTIYRYFSDKEHLLKEVRLIVTT 66 ++ R+ I+ A RL ++ G S+ ++A AGV G IY +F DK L E+ + + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 67 RIAEAVQ 73 I E Sbjct: 69 NIGELEL 75
>SECA#SecA protein signature. Length = 901 Score = 27.9 bits (62), Expect = 0.042 Identities = 37/183 (20%), Positives = 63/183 (34%), Gaps = 57/183 (31%) Query: 82 GLIQTILAEQGIEIDAEQAQQA----QSFFDSARMGAFTFFPGVKEML-------TELRQ 130 GL Q + A++G++I E A Q++ F + + M E Sbjct: 352 GLHQAVEAKEGVQIQNENQTLASITFQNY--------FRLYEKLAGMTGTADTEAFEFSS 403 Query: 131 HYKLVVI---TNGPIF--SQHPKLQATQMSEW---VDHI----------IVGGEEPEEKP 172 YKL + TN P+ + T+ + ++ I +VG E+ Sbjct: 404 IYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEK-- 461 Query: 173 AASIFHKAL-------NLVDAKPEEAIHIGDSLPADI-AGANNMGILSVWVNEAGTANPT 224 + + L N+++AK A I A A +++ N AG T Sbjct: 462 -SELVSNELTKAGIKHNVLNAKFHAN-------EAAIVAQAGYPAAVTIATNMAGRG--T 511 Query: 225 DIK 227 DI Sbjct: 512 DIV 514
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 26.7 bits (59), Expect = 0.033 Identities = 8/16 (50%), Positives = 10/16 (62%) Query: 3 EARVVIALIQRVSEAA 18 A ++ LIQ SEAA Sbjct: 170 AASALMVLIQSTSEAA 185
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.0 bits (93), Expect = 4e-05 Identities = 65/355 (18%), Positives = 120/355 (33%), Gaps = 58/355 (16%) Query: 398 GLNLEGDQLEVKHNNGHWGIWSGKLDASVVNASYDQVITSHAAITTQSDDGLWQLTRLFA 457 +NL V +G + ++ V +T ++ + + QL Sbjct: 818 NVNLTESANFVLGKANLFGTIQSRGNSQVR-------LTENSHWHLTGNSDVHQLD---- 866 Query: 458 PLEQGYIEGLGQIDLSTTSQPWTLNLNADGIPLLLLHPYLPTALAVNGFSDLSLDLKGLA 517 L G+I + + ++ TL +N+ L+ NG DL Sbjct: 867 -LANGHIHLNSADNSNNVTKYNTLTVNS---------------LSGNGSFYYLTDLSNKQ 910 Query: 518 GDQNMLAYSLSGEVEANLRDTTLKSQADDSLKAVTFSPLRLRAQRGEVKLQPVTISGKAI 577 GD+ ++ S +G + D T + L S +AQR + V++ G + Sbjct: 911 GDKVVVTKSATGNFTLQVADKT-GEPNHNELTLFDAS----KAQRDHLN---VSLVGNTV 962 Query: 578 SG--------NLSGEFDMANNPLSGVIYQLKDTCGVIKGDVLSGEIETNECQNKPKQKEQ 629 N++G +D+ NP Q DT + + + ++ + N+ + Sbjct: 963 DLGAWKYKLRNVNGRYDL-YNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVD 1021 Query: 630 TEPEQ--SAPEPSKVTRIAAINLEQHEEEISEEVMEEEEPTATSHSEEQLISAPEVSANN 687 P + PS+ T A N +Q + + + + E TA + E + V AN Sbjct: 1022 EAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQN-REVAKEAKSNVKANT 1080 Query: 688 EINE---------EASPEERNTPETNHSVTEQGASAN--QDAPQETPASSPLTAK 731 + NE E E T + Q+ P+ T SP + Sbjct: 1081 QTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ 1135 Score = 35.4 bits (81), Expect = 0.001 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 9/112 (8%) Query: 616 ETNECQNKPKQ-KEQTEPEQSAPEPSKVTRIAAINLEQHEEEISEEVMEEEEPTATSHSE 674 ET E K+ K + E E++ P ++++ + + E E +PT Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 675 EQLISAPEVSANNEINEEASPEERNTPETNHSVTEQGASANQDAPQETPASS 726 + S N + P + + VTE ++ E P ++ Sbjct: 1159 Q--------SQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENT 1202
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 219 bits (558), Expect = 1e-72 Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 33/283 (11%) Query: 30 LSLFLTCLFIAMTGWILGKVVW-LAMPQTSDVT--QWKPSAGAVASTNKKDEIDFNALQN 86 + L L + + L + W + +P + V+ Q P A A L + Sbjct: 14 IRRILFYLLMLLFCQQLAMIFWRIGLPDNAPVSSVQITP---AQARQQPV------TLND 64 Query: 87 ANLFGKYTEQK-PVVVEQPVVQDAPKTRLNLTLAGAVASSNAKTSLAVIANRGKQATYGI 145 LFG E+ ++ + + P + LNL+L G +A + S+A+I+ +Q + G+ Sbjct: 65 FTLFGVSPEKNKAGALDASQMSNLPPSTLNLSLTGVMAGDDDSRSIAIISKDNEQFSRGV 124 Query: 146 GEEIDGTRAELKAVLVDRVIIDNQGRDETLMLEGIEYSKLSETRPAARPQAAKADKSSAV 205 EE+ G A++ ++ DRV++ QGR E L L E ++ P A Sbjct: 125 NEEVPGYNAKIVSIRPDRVVLQYQGRYEVLGLYSQE-----DSGSDGVPGA--------- 170 Query: 206 SEKVDQIRAEIS-KDPQSVFKYINISPVKKDGGIVGYRVSPGRDAALFNDVGLKPGDIAV 264 Q+ ++ + ++ Y++ SP+ D + GYR++PG + F VGL+ D+AV Sbjct: 171 -----QVNEQLQQRASTTMSDYVSFSPIMNDNKLQGYRLNPGPKSDSFYRVGLQDNDMAV 225 Query: 265 QLNGIDLSDPSSSVELMQVMNDPQELNLTVERDGQQYDIYIQL 307 LNG+DL D + + M+ M D LTVERDGQ+ DIY++ Sbjct: 226 ALNGLDLRDAEQAKKAMERMADVHNFTLTVERDGQRQDIYMEF 268
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 626 bits (1616), Expect = 0.0 Identities = 312/619 (50%), Positives = 431/619 (69%), Gaps = 34/619 (5%) Query: 1 MANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKIDVRSYDVLNEKQYYSFFLNVL 60 A EFSASFKGTDIQEFIN V +NL KT+I+DPSVRG I VRSYD+LNE+QYY FFL+VL Sbjct: 26 AAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVL 85 Query: 61 EVYGYAVVEMDNGVLKVIKAKDSKTSAIPVLGDDSAQ-GDSVITRVVAVRNVSVRELSPL 119 +VYG+AV+ M+NGVLKV+++KD+KT+A+PV D + GD V+TRVV + NV+ R+L+PL Sbjct: 86 DVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPL 145 Query: 120 LRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGDKEIEVVELRNASAS 179 LRQL DNAG G+VVHY+P+N++L+TGRAAV+ RL I++RVD AGD+ + V L ASA+ Sbjct: 146 LRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGDRSVVTVPLSWASAA 205 Query: 180 EMVRIVDALNKTTNQKSTPEFLEPKIVADDRTNSILISGDPKVRARLKRLIRQLDVEMAT 239 ++V++V LNK T++ + P + +VAD+RTN++L+SG+P R R+ +I+QLD + AT Sbjct: 206 DVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAT 265 Query: 240 KGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKQAGQNGASSAQRGEVVIAAHEATNSLVL 299 +GN +V+YLKYAKA DLV+VL G+S +Q+EKQA + +A ++I AH TN+L++ Sbjct: 266 QGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKP--VAALDKNIIIKAHGQTNALIV 323 Query: 300 TAQPDIMMALQDVISQLDIRRAQVLIEALIVEMSEGDGINLGVQWGNLDTGAVIQYGNTG 359 TA PD+M L+ VI+QLDIRR QVL+EA+I E+ + DG+NLG+QW N + G + Q+ N+G Sbjct: 324 TAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNAG-MTQFTNSG 382 Query: 360 AQIGNVMVGLEEAKDTTKTESYWDEDANGGSGDWNTREYIEEGDYSTLAAALGGVNGAAM 419 I + G + +G S+LA+AL NG A Sbjct: 383 LPISTAIAGAN------------QYNKDGTVS-------------SSLASALSSFNGIAA 417 Query: 420 SIMMGDWTALITAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTSGSNNDNPF 479 G+W L+TA+SS + ++IL++PSI +DN EA+F VG+EVPV+TGS + S DN F Sbjct: 418 GFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTS-GDNIF 476 Query: 480 QTVDRKEVGIKLKVVPQINEGDSVQLTIEQEVSNVL----GANGAVDVRFAKRQLNTSVM 535 TV+RK VGIKLKV PQINEGDSV L IEQEVS+V + + F R +N +V+ Sbjct: 477 NTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVL 536 Query: 536 IQDGQMLVLGGLVDERALESESKVPLLGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIRD 595 + G+ +V+GGL+D+ ++ KVPLLGDIPVIG LF+STS + KRNLM+FI+PT+IRD Sbjct: 537 VGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRD 596 Query: 596 GMTADGITQRKYNFIRAEQ 614 + +Y Q Sbjct: 597 RDEYRQASSGQYTAFNDAQ 615
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 532 bits (1371), Expect = 0.0 Identities = 218/407 (53%), Positives = 306/407 (75%), Gaps = 2/407 (0%) Query: 1 MAAFEYKALDAKGKQKKGTIEGDNARQVRQRLKEQGMIPVEVMEAKAKAAKSSGGSVGFK 60 MA + Y+ALDA+GK+ +GT E D+ARQ RQ L+E+G++P+ V E + KS + + Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 61 RGIK--TAELALITRQLSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPL 118 R I+ T++LAL+TRQL+TLV + MPLEE L AV++Q+EKP + ++AAVRSKV EG+ L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 119 ADSLGDYPHVFDELYLSMVAAGEKSGHLDTVLERLADYVENRQKMRSKLLQAMIYPVVLV 178 AD++ +P F+ LY +MVAAGE SGHLD VL RLADY E RQ+MRS++ QAMIYP VL Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 179 VFAVGIVSLLLSSVVPKIIEPIIQMGQELPQSTQFLLSASEFVQEWGLIIFVVVVVFFYG 238 V A+ +VS+LLS VVPK++E I M Q LP ST+ L+ S+ V+ +G + + ++ F Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 239 LKLALQKPNFRLAWDQKILSLPLIGKISRGLNTSRFARTLSICTSSAIPILEGMRVAVDV 298 ++ L++ R+++ +++L LPLIG+I+RGLNT+R+ARTLSI +SA+P+L+ MR++ DV Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 299 MSNRYVKQQVLVAADNVREGASLRKALDQTRLFPPMMLHMISSGEQSGELESMLTRAADN 358 MSN Y + ++ +A D VREG SL KAL+QT LFPPMM HMI+SGE+SGEL+SML RAADN Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 359 QDQNFESTVNIALGIFTPVLIALMAGLVLFIVMATLMPMLEMNNLMS 405 QD+ F S + +ALG+F P+L+ MA +VLFIV+A L P+L++N LMS Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLMS 407
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 216 bits (551), Expect = 8e-76 Identities = 86/141 (60%), Positives = 110/141 (78%), Gaps = 4/141 (2%) Query: 4 KRSKQQGFTLLEVMVVVVILGILASVVVPNLLGNKEKADQQKAITDIVALENALDMYKLD 63 KQ+GFTLLE+MVV+VI+G+LAS+VVPNL+GNKEKAD+QKA++DIVALENALDMYKLD Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 64 NSVYPTTDQGLDALVNKPS-NPEPRNYRDGGYIKRLPSDPWSNEYQYLSPGDNGTIDIFT 122 N YPTT+QGL++LV P+ P NY GYIKRLP+DPW N+Y ++PG++G D+ + Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLS 122 Query: 123 LGADGQEGGEGPAADIGNWNM 143 G DG+ G E DI NW + Sbjct: 123 AGPDGEMGTED---DITNWGL 140
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 101 bits (254), Expect = 1e-29 Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 20/175 (11%) Query: 9 GFTLIEILLVLVLLSLTAVAVIATLPTSQKDLSKQYAQSFFQRLQLLNEEAVLSGKDFGL 68 GFTL+E++L+L+L+ ++A V+ P S+ D + Q F +L+ + + + +G+ FG+ Sbjct: 5 GFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQFFGV 64 Query: 69 RVDDVKSTYTLLSLTQDGWQPLELKQIPSDTKLEGDISVQLELGGGAWG--DDDRLFEPG 126 V D WQ L L+ D G W R+ G Sbjct: 65 SVHP------------DRWQFLVLEARDGADPAPADDGWS----GYRWLPLRAGRVATSG 108 Query: 127 SLFDEDM-FAELEDKKKKKVKPPQVFILSSAEITPFTLSFFPEEGDAFN-DGWRI 179 S+ + A + + P V I E+TPF L+ G AFN G + Sbjct: 109 SIAGGKLNLAFAQGEAWTPGDNPDVLIFPGGEMTPFRLTLGEAPGIAFNARGESL 163
>AEROLYSIN#Aerolysin signature. Length = 493 Score = 28.5 bits (63), Expect = 0.006 Identities = 11/31 (35%), Positives = 14/31 (45%) Query: 68 AGRTWYWKVTPVATEQPLLKAFDVSVATEKE 98 A TW + PV E P L A D+ E + Sbjct: 93 ASNTWCYPTNPVTGEIPTLSALDIPDGDEVD 123
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 31.1 bits (70), Expect = 0.003 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 17/97 (17%) Query: 15 SNRGFTLIE---VLVSIAIFASMSVAAYQVVSQVQRSNVLSQER---TQRLNELQRAMVM 68 RGFTL+E +L+ + + A M + A+ R + +Q +L +Q+ + Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAF----PASRDDSAAQTLARFEAQLRFVQQRGLQ 57 Query: 69 MDNDF-------RQMAMRQVRTNGEEPSKQLLFWSEY 98 F R + +G +P+ WS Y Sbjct: 58 TGQFFGVSVHPDRWQFLVLEARDGADPAPADDGWSGY 94
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 30.1 bits (67), Expect = 0.009 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Query: 34 YEAYTKSDETPVTSADIAAHKL--ITERLSELTPDIPVLSEEAADISLEQRAQWERYWLV 91 YEA K +T + D A KL +L L P P ++ A + + E + Sbjct: 143 YEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEAL 202 Query: 92 D 92 D Sbjct: 203 D 203
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 33.2 bits (75), Expect = 0.001 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 125 GLLLWWVDRNAELVADEYQTGWKKALFIGIAQALAMIPGTSRSGATITAALYLGF 179 G+L W+ + AE A +T K + Q LA S + A Y + Sbjct: 527 GVLTWYEEGTAEFFAGSTRTDGIKPR-KSVTQGLAYDRNNRMSLYGVLHAKYGSW 580
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.016 Identities = 16/43 (37%), Positives = 24/43 (55%) Query: 47 MLTGEVGTGKTTVAKAMLANLDQNTKAGLILNPTFSSRDLLEA 89 M+TGE GTGK VA+A+ + + +N RDL+E+ Sbjct: 164 MITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIES 206
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.8 bits (69), Expect = 0.003 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Query: 95 VEKELKEVKEQLANARQNSDTEKAGLVTSLETRNQQISDLEKKYSEISDQLTSVETENRE 154 +E E ++++EQ + S+ + L L+ + +EK E + +L ++E N+E Sbjct: 363 LEAEHQKLEEQN----KISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKE 418 Query: 155 LRAKL 159 L Sbjct: 419 LEESK 423 Score = 29.3 bits (65), Expect = 0.012 Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 94 RVEKELKEVKEQLANARQNSDTEKAGLVTSLETRNQQISDLEKKYSEISDQLTSVETENR 153 +K+L+ ++L + S+ + L L+ + LE ++ ++ +Q E + Sbjct: 323 EAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQ 382 Query: 154 ELRAKLDTQKD 164 LR LD ++ Sbjct: 383 SLRRDLDASRE 393
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 29.3 bits (65), Expect = 0.013 Identities = 34/181 (18%), Positives = 82/181 (45%), Gaps = 20/181 (11%) Query: 29 ECCSHLVKFFEVSSKGDWEKAAEIRAQISHLEK-EADVLK--REIRLKLPRGLFMPVDRT 85 + ++LVK E ++ E +I+ L+K DVL+ E+ ++ F +D Sbjct: 61 DSINNLVKT-EFTN----ETLDKIQQTQDLLKKIPKDVLEIYSELGGEI---YFTDIDLV 112 Query: 86 DMLEL--LTQQDKLANLAKDIAGR---VYGRQLVIPEALQPNFLAYVQRCLDAADQAQKV 140 + EL L++++K + + G R + + P + ++ ++Q+++V Sbjct: 113 EHKELQDLSEEEKNS---MNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEV 169 Query: 141 INELDELLETGFKGREVTLVAEMIHQLDVIEDDTDAMQIELRQQLM-AIEADMNPIDVMF 199 E+ + + ++ +L E ++ + + DD+D+ + Q+ +E + ID+ F Sbjct: 170 YYEIGKGISLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKEKLELNNKSIDINF 229 Query: 200 L 200 + Sbjct: 230 I 230
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 32.2 bits (73), Expect = 0.005 Identities = 14/93 (15%), Positives = 43/93 (46%) Query: 167 SAQEEFNEIDQLATAMSEMSSTVQTVADHAQTASSLTEQASTQAVTGQQFLQKTVSKMSE 226 A+ + + + +S + + T + + +Q S V+ + + ++ +++ Sbjct: 131 GAENIGDNLGKAGGILSTFQNFLGTALSSMKIDELIKKQKSGGNVSSSELAKASIELINQ 190 Query: 227 LSSDIASSASAVNQVEERVDAIGSVVGTIQGIS 259 L +AS + VN ++++ +GSV+ + ++ Sbjct: 191 LVDTVASLNNNVNSFSQQLNTLGSVLSNTKHLN 223
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 29.8 bits (67), Expect = 0.014 Identities = 10/28 (35%), Positives = 15/28 (53%) Query: 347 GCFDILHAGHVSYLNHAAELGDRLIVAV 374 G FD + GH+ + L D++ VAV Sbjct: 7 GSFDPITFGHLDIIERGCRLFDQVYVAV 34
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.3 bits (81), Expect = 4e-05 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 9/126 (7%) Query: 14 LVPIFVELEQYYFNEQAASEKELTHYLKYKVFSEY---SGVKVIAAYNDDTIMGFATYTV 70 ++P F E + + E+ S+ Y + Y G Y ++ +G Sbjct: 26 MIPAF-ENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRS 84 Query: 71 MFPAPKLSGQMYLKDLFVSSSARGKGVGLKLMKYLTSLAVNHGCHRLDWTAESTNPIAGR 130 + +G ++D+ V+ R KGVG L+ A + L + N A Sbjct: 85 NW-----NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACH 139 Query: 131 FYQSIG 136 FY Sbjct: 140 FYAKHH 145
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 0.001 Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 27/163 (16%) Query: 148 QYAGHLNLLKSTRSAYQHWRQADNNLKQLKENSQQNQAQKQLLEYQIKELNELSLGEEE- 206 + +L+K S +Q N Q + N + +A++ + +I LS E+ Sbjct: 183 EVLRLTSLIKEQFSTWQ------NQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSR 236 Query: 207 -------FAE--------LEQEHKRLSNSGELAATCQQAIELIYEGEEVNALGILQSA-- 249 + LEQE+K + EL Q ++ E L + Sbjct: 237 LDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLF 296 Query: 250 -NHSLIQLAELDEKLAELPNMLSEAMIQLEETKNELRSYLDGI 291 N L +L + + + L L++ + + + +R+ + Sbjct: 297 KNEILDKLRQTTDNIGLLTLELAKNEERQQAS--VIRAPVSVK 337
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 140 bits (354), Expect = 8e-39 Identities = 83/384 (21%), Positives = 145/384 (37%), Gaps = 79/384 (20%) Query: 5 IGIDLGTTNSCVAVLDG----DKPRVIE-NAEGERTTASVVAYTDGETLVGQPAKRQAVT 59 + IDLGT N+ + V ++P V+ + + SV A VG AK+ Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAA-------VGHDAKQMLGR 65 Query: 60 NPTNTLFAIKRLIGRRFEDEEVQRDIEIMPYKIVKADNGDAWVEAQGQKMAAPQVSAEIL 119 P N + AI+ + D V +KM + Sbjct: 66 TPGN-IAAIRPMKDGVIADFFVT------------------------EKM-----LQHFI 95 Query: 120 KKMKKTAEDFLGEEVTGAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 179 K++ + ++ VP +R+A +++ + AG +I EP AAA+ G Sbjct: 96 KQVHS---NSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAG 152 Query: 180 LDKSGGDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLATNGDTHLGGEDFDTRLINYL 239 L S V D+GGGT ++++I ++ V + +GG+ FD +INY+ Sbjct: 153 LPVS-EATGSMVVDIGGGTTEVAVISLNGV---------VYSSSVRIGGDRFDEAIINYV 202 Query: 240 VDEFNKEQGINLKNDPLAMQRVKEAAEKAKIELSSTSQTD----VNLPYVTADATGPKHM 295 + G + AE+ K E+ S D + + P+ Sbjct: 203 RRNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGF 249 Query: 296 NVKVTRAKLESLVEDLVQRSLEPLKVALADA--DLSVNDITD--VILVGGQTRMPMVQAK 351 + + LE+L E L + + VAL +L+ +DI++ ++L GG + + Sbjct: 250 TLN-SNEILEALQEPLTG-IVSAVMVALEQCPPELA-SDISERGMVLTGGGALLRNLDRL 306 Query: 352 VAEFFGKEARRDVNPDEAVAMGAA 375 + E G +P VA G Sbjct: 307 LMEETGIPVVVAEDPLTCVARGGG 330
>PF07132#Harpin protein (HrpN) Length = 356 Score = 29.7 bits (66), Expect = 0.022 Identities = 16/43 (37%), Positives = 18/43 (41%) Query: 78 GGFGGGGFGGGGADFGDIFGDVFGDIFGGGRRGGGQQRAQRGA 120 G GGG GGG G G + G + GGG GG G Sbjct: 62 GSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGL 104
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 41.4 bits (97), Expect = 1e-07 Identities = 15/47 (31%), Positives = 31/47 (65%) Query: 2 TLIELLIAVVIVGIIAAIAYPSYSNHSITAHRTVAISDIARLQLELE 48 TL+E+++ +VI+G++A++ P+ + A + A+SDI L+ L+ Sbjct: 11 TLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALD 57
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 30.3 bits (68), Expect = 0.003 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 4/48 (8%) Query: 17 RGFTLLELLNTIAVMSVLLVAAAPSFQNVFETKKMQRLADELHGFVLQ 64 RGFTLLE++ + +M V + F + A L F Q Sbjct: 4 RGFTLLEMMLILLLMGVSAGMVLLA----FPASRDDSAAQTLARFEAQ 47
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 32.6 bits (74), Expect = 2e-04 Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 5/58 (8%) Query: 4 KQKGFSLIEVLISFLLLGI-GALGLTKLQIYMER-ESDYAIQSIEALRLAENQLELFR 59 KQ+GF+L+E+++ +++G+ +L + L E+ + A+ I AL EN L++++ Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVAL---ENALDMYK 60
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.002 Identities = 9/32 (28%), Positives = 15/32 (46%) Query: 98 NVNVMEEMANMISASRAYQTNLQVADSSKQML 129 VN+ EE N+ + Y N QV ++ + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIF 539
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 37.6 bits (87), Expect = 8e-05 Identities = 14/33 (42%), Positives = 21/33 (63%) Query: 3 YVSLSGLSSAQLDLNTTSNNIANANTYGFKESR 35 ++SGL++AQ LNT SNNI++ N G+ Sbjct: 5 NNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37 Score = 34.9 bits (80), Expect = 6e-04 Identities = 11/49 (22%), Positives = 26/49 (53%) Query: 389 TINNGMLEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQIR 437 ++N S +++ +E +L Q+ + AN++ L+ N + ++ IR Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 44.2 bits (104), Expect = 3e-07 Identities = 10/47 (21%), Positives = 22/47 (46%) Query: 214 EIRQSMLEASNVNVTEELVNMIEAQRVYEMNSKVISSVDKMMSFVNQ 260 ++ S VN+ EE N+ Q+ Y N++V+ + + + + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 39.6 bits (92), Expect = 8e-06 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 14/77 (18%) Query: 5 LWVSKTGLDAQQTNIATISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPS 64 + + +GL+A Q + T SNN+++ + GY + + + N+ L + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI--------------MAQANSTLGA 49 Query: 65 GLMLGAGSKVVATQKVH 81 G +G G V Q+ + Sbjct: 50 GGWVGNGVYVSGVQREY 66
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 148 bits (375), Expect = 3e-46 Identities = 72/204 (35%), Positives = 105/204 (51%), Gaps = 13/204 (6%) Query: 66 AWAPIHPKQK--------PEHYAAATGSLFSTEHITD-----LYDDSKPRGIGDIITVTL 112 AW P P + P A GS+F + + L++D +PR IGD +T+ L Sbjct: 23 AWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVL 82 Query: 113 DETTRATKSAKADLSKTNDAKMEPLSVGGQELKIGGKYNFSYDLNNTNTFAGDSSAKQSN 172 E A+KS+ A+ S+ +V + G + + NTF G A SN Sbjct: 83 QENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASN 142 Query: 173 SISGYITVEVIEVLANGNLVIRGEKWMTLNTGDEYIRLSGTIRPDDINFDNTIASNRVSN 232 + SG +TV V +VL NGNL + GEK + +N G E+IR SG + P I+ NT+ S +V++ Sbjct: 143 TFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVAD 202 Query: 233 ARIQYSGTGSPQDMQEPGFLARFF 256 ARI+Y G G + Q G+L RFF Sbjct: 203 ARIEYVGNGYINEAQNMGWLQRFF 226
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 416 bits (1070), Expect = e-147 Identities = 166/366 (45%), Positives = 226/366 (61%), Gaps = 12/366 (3%) Query: 4 ILLALLSVALFATTAQAARIKDVAQVAGVRSNQLVGYGLVSGLPGTGES---NPFTEQSF 60 + AL ++ A +RIKD+A + R NQL+GYGLV GL GTG+S +PFTEQS Sbjct: 12 VFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSM 71 Query: 61 AAMLQNFGIQMPPGTKPKIKNVAAVMVTATLPPFSKPGQQVDVTVSSIGSAKSLRGGTLL 120 AMLQN GI G KN+AAVMVTA LPPF+ PG +VDVTVSS+G A SLRGG L+ Sbjct: 72 RAMLQNLGITTQGGQ-SNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLI 130 Query: 121 QTFLKGLDGQVYAVAQGNLVVSGFSAEGADGSKIVGNNPTVGLISSGATVEREIPNPFGR 180 T L G DGQ+YAVAQG L+V+GFSA+G D + + T + +GA +ERE+P+ F Sbjct: 131 MTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKFKD 189 Query: 181 GDYITFNLLDSDFTTAQRMADAVNNF----LGPQMASAVDATSVRVRAPRDVSQRVAFLS 236 + L + DF+TA R+AD VN F G +A D+ + V+ PR V+ ++ Sbjct: 190 SVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR-VADLTRLMA 248 Query: 237 AIENLEFDPADGAAKIIVNSRTGTIVVGKHVRLKPAAVTHGGMTVAIKENLNVSQPNGFS 296 IENL + D AK+++N RTGTIV+G VR+ AV++G +TV + E+ V QP FS Sbjct: 249 EIENLTVET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFS 307 Query: 297 GGQTVVVPDSDIEVNEEKGKMFKFEPGLTLDDLVRAVNEVGAAPSDLMAILQALKQAGAI 356 GQT V P +DI +E K+ E G L LV +N +G ++AILQ +K AGA+ Sbjct: 308 RGQTAVQPQTDIMAMQEGSKVAIVE-GPDLRTLVAGLNSIGLKADGIIAILQGIKSAGAL 366 Query: 357 EGQLII 362 + +L++ Sbjct: 367 QAELVL 372
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 274 bits (701), Expect = 1e-93 Identities = 104/304 (34%), Positives = 161/304 (52%), Gaps = 28/304 (9%) Query: 13 DISSLDSLRQKAVKEGKDGEHEA--LQAAARQFESIFTSMMLKSMREANEGFESNLMNSQ 70 D SL+ L+ KA GE A ++ ARQ E +F MMLKSMR+A + L +S+ Sbjct: 14 DAQSLNELKAKA------GEDPAANIRPVARQVEGMFVQMMLKSMRDALP--KDGLFSSE 65 Query: 71 NEKFYRQMLDEQMASNLSASGSMGLADMIVKQLTVGQ---GDDKAETAIRDAANNAVEYR 127 + + Y M D+Q+A ++A +GLA+M+VKQ+T Q + ++ V Y+ Sbjct: 66 HTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLETVVRYQ 125 Query: 128 RVDPKKAREIEQRLIESGQLSRPGS--EPSRFDSPESFVNSMKPYADRAAKALGVEPSLL 185 Q L + Q + P + + DS ++F+ + A A++ GV L+ Sbjct: 126 ----------NQALSQLVQKAVPRNYDDSLPGDS-KAFLAQLSLPAQLASQQSGVPHHLI 174 Query: 186 LAQAALETGWGQKVVKNARGS-SNNLFNIKADRSWQGDKVTTQTLEFHDNTPVKETAAFR 244 LAQAALE+GWGQ+ ++ G S NLF +KA +W+G T E+ + K A FR Sbjct: 175 LAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFR 234 Query: 245 SYSNYQDSFNDYVRFLNENPRYETALQQGGDSESFIRGIHSAGYATDPSYADKVLQVKQK 304 YS+Y ++ +DYV L NPRY A+ +E + + AGYATDP YA K+ + Q+ Sbjct: 235 VYSSYLEALSDYVGLLTRNPRY-AAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQ 293 Query: 305 IESM 308 ++S+ Sbjct: 294 MKSI 297
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 472 bits (1217), Expect = e-163 Identities = 119/455 (26%), Positives = 214/455 (47%), Gaps = 18/455 (3%) Query: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGTNDPRQFGGSTYGMGVHVE 62 S L+N + AQ LNT +NIS+ N GY+RQ+ I + G G GV+V Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 63 NVRRSWDEFAVKELNLSTTNYANKLDNEKNLDLLSSMLSSVASKKIPENMNEWFDAVKTM 122 V+R +D F +L + T + + + + +MLS+ ++ + M ++F +++T+ Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST-STSSLATQMQDFFTSLQTL 119 Query: 123 ADTPNDMGARKVVLEKAKLLSDTLNEFHETVRQQSDVTNKSLDMGIERVNQLAVEIRDVH 182 D AR+ ++ K++ L + + +R Q N ++ ++++N A +I ++ Sbjct: 120 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 179 Query: 183 RLMMRTPG-----PHNDLMDQHEKLIKELSEYTKVTVTPRKNSEGFNVHIGNGHTLVSGT 237 + R G N+L+DQ ++L+ EL++ V V+ + +N+ + NG++LV G+ Sbjct: 180 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGT-YNITMANGYSLVQGS 238 Query: 238 EASQLKMIDGSPDVHQRRLAMVEG--GGIKAIKSDDIDGKIGALLKMRDEHIPQVMDELG 295 A QL + S D + +A V+G G I+ + G +G +L R + + Q + LG Sbjct: 239 TARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLG 298 Query: 296 RLATAFSSEVNHLQSQGLDHYGNVGDPLFTDVNSERLAKSRVVAGPQSTADMAV--YIND 353 +LA AF+ N G D G+ G+ F + K V+ ++ D+A+ + D Sbjct: 299 QLALAFAEAFNTQHKAGFDANGDAGEDFFA------IGKPAVLQNTKNKGDVAIGATVTD 352 Query: 354 ISALKGGEYSLRYDGDSYAVTKPNGETVKLNT-DAGNAFYIDGMRVEVRNEPKVGEHVLL 412 SA+ +Y + +D + + VT+ T T DA DG+ + P V + L Sbjct: 353 ASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTL 412 Query: 413 RPTRSSAAQMKVETTDPKAIAAQSYEASTTFAQGN 447 +P + M V TD IA S E + N Sbjct: 413 KPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRN 447 Score = 135 bits (340), Expect = 9e-36 Identities = 35/105 (33%), Positives = 60/105 (57%) Query: 533 EGDNGNLRKMQNIQTDKKMNGNESTIMSLYFNLNTDVGLKTSTASRLADVAQLESEAAQE 592 + DN N + + ++Q++ K G + Y +L +D+G KT+T + Sbjct: 442 DSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSN 501 Query: 593 RVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNTILQLR 637 + SISGVNLDEE N+ +FQQ Y+A+++V+Q AN F+ ++ +R Sbjct: 502 QQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>FLAGELLIN#Flagellin signature. Length = 507 Score = 35.8 bits (82), Expect = 3e-04 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 3/167 (1%) Query: 217 KSDSNYKVTFVDMSNGKFGYQLEKDGGIVQVDDYSPIDGIQYEGVNIQLKGQVSAGDSIT 276 +S N + V+ + + ++ + + G VN +AGD +T Sbjct: 328 QSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVT 387 Query: 277 LEPRQTFSIFDAFKETMQWSESSVSDASATAKLHQMTEEFQAAFVHMNKVRTDVGAKLST 336 L ++F + + + A+A +A ++ VR+ +GA + Sbjct: 388 L---AGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNR 444 Query: 337 LDIQEQNHEDFNLSLAKAKSNFEDLDYSKAVIEFSENSRALQASQQA 383 D N + +L A+S ED DY+ V S+ QA Sbjct: 445 FDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSV 491 Score = 34.2 bits (78), Expect = 0.001 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 2/135 (1%) Query: 9 HNYQSV--QNDLRRQENKVHHNQEQLASGKQLTKPSDDPLATHYIQSIGQQEEQLRQYLD 66 N S+ QN+L + ++ + E+L+SG ++ DD + L Q Sbjct: 6 TNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASR 65 Query: 67 AIVLVRNRLENQEVAVANAEQFVDESKRLSMEMINGAFSPEDRAAKKRELEEIANNFMAL 126 + + E A+ + + LS++ NG S D + + E+++ + Sbjct: 66 NANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRV 125 Query: 127 ANSQDESGNYVFAGT 141 +N +G V + Sbjct: 126 SNQTQFNGVKVLSQD 140
>FLAGELLIN#Flagellin signature. Length = 507 Score = 182 bits (462), Expect = 9e-55 Identities = 89/370 (24%), Positives = 158/370 (42%), Gaps = 10/370 (2%) Query: 2 AVTVSTNVSAMTAQRYLNKATNELNTSMERLSSGHKINSAKDDAAGLQISNRLTAQSRGL 61 A ++TN ++ Q LNK+ + L++++ERLSSG +INSAKDDAAG I+NR T+ +GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 DVAMRNANDGISIAQTAEGAMNEATSVMQRMRDLAIQSANGTNSPAERKAINEESSALTD 121 A RNANDGISIAQT EGA+NE + +QR+R+L++Q+ NGTNS ++ K+I +E + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELNRIAETTSFGGRRLLNGSFGEAAFQIGSSSGEAMIMALTSIRADDQRMGGVTFFSENG 181 E++R++ T F G ++L+ Q+G++ GE + + L I + G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQ-MKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 KDKDWGVDPTKADLKITLPGMGEDEDGNPDDLEININAKTGDDIEELATYINGQSDMINA 241 + + +++N+ T + Sbjct: 180 ATVGD------LKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAAN 233 Query: 242 SVSEDGKLQVFVAHPNVQGDISISGGLASDLGLSDEAVRTSVQDIDMTTVQGSQNAISVL 301 + A + S +G + D V + + + Sbjct: 234 GQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGN 293 Query: 302 DSALK---YVDSQRADLGAKQNRLSHSINNLANIQENVDASNSRIKDTDFAKETTQMTKA 358 D K ++ ++ L + + A +Q + + S + + T+ A Sbjct: 294 DGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESA 353 Query: 359 QILQQAGTSI 368 ++ + Sbjct: 354 KLSDLEANNA 363 Score = 133 bits (335), Expect = 1e-36 Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 24/241 (9%) Query: 162 TSIRADDQRMGGVTFFSENGKDKDWGVDPTKADLKITLPGMGEDEDGNPDDLEININAKT 221 D + T ++ G D + V T K+TL + N++A T Sbjct: 273 KEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTL------TVADITAGAANVDAAT 326 Query: 222 GDDIEEL-ATYINGQSDMINASVSEDGKLQVFVAHPNVQGDISISGGLASDLGLSDEAVR 280 + + + +NGQ + + +E KL A+ V+G+ I+ A + Sbjct: 327 LQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKV 386 Query: 281 T-----------------SVQDIDMTTVQGSQNAISVLDSALKYVDSQRADLGAKQNRLS 323 T + + + + N ++ +DSAL VD+ R+ LGA QNR Sbjct: 387 TLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFD 446 Query: 324 HSINNLANIQENVDASNSRIKDTDFAKETTQMTKAQILQQAGTSILAQAKQLPNSAMSLL 383 +I NL N N++++ SRI+D D+A E + M+KAQILQQAGTS+LAQA Q+P + +SLL Sbjct: 447 SAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506 Query: 384 Q 384 + Sbjct: 507 R 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 193 bits (491), Expect = 6e-59 Identities = 86/297 (28%), Positives = 141/297 (47%), Gaps = 2/297 (0%) Query: 2 AVNVITNVSAMTAQRYLNNANSAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGL 61 A + TN ++ Q LN + S+ +++ERLSSG +INSAKDDAAG I+NR +GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 DVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKAERVAIQEEVTALND 121 A RNANDGISIAQT EGA+NE N LQR+R+LS+Q+ NG+NS ++ +IQ+E+ + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELNRIAETTSFGGNKLLNGTYGTQSFQIGADNGEAVMLNLKDMRSDNKMMGGVSYQADNG 181 E++R++ T F G K+L+ Q+GA++GE + ++L+ + + + G + Sbjct: 121 EIDRVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 KDKNWNVEAGKNDLKISLTDSFGQEQEINISAKAGDDIEELATYINGQTDLVKASVDQDG 241 + KN + +++++ A T + Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 242 KLQVFAGNNKVEGDVEFSGGLSGELGLNDGKKVTV-DTIDVTSVGGAQESVAIIDAA 297 + + + +G + K DT D V ++ D Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Score = 135 bits (341), Expect = 1e-37 Identities = 85/377 (22%), Positives = 141/377 (37%), Gaps = 21/377 (5%) Query: 19 NNANSAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTA 78 N Q + ++ G L + ++ + + Sbjct: 132 NGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKN 191 Query: 79 EGAMNETTNILQRMRDLSLQSANGSNSKAERVAIQEEVTALNDELNRIAETTSFGGNKLL 138 + + R A +++ A V + V A N +L + + Sbjct: 192 VTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFK 251 Query: 139 NGTYGTQSFQIGADNGEAVMLNLKDMRSDNKMMGGVSYQADNGKDKNWNVEAGKNDLKIS 198 + + A G D + G D N V N K++ Sbjct: 252 TTKSTAGTAEAKAIAGAIKGGKEGDTFDYKG--VTFTIDTKTGNDGNGKVSTTINGEKVT 309 Query: 199 LTDSFGQEQEINISAKAGDDIEEL-ATYINGQTDLVKASVDQDGKLQVFAGNNKVEGDVE 257 LT + N+ A + + + +NGQ + ++ KL NN V+G+ + Sbjct: 310 LTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESK 369 Query: 258 FSGGLSGELGLNDGKKVTVD------------------TIDVTSVGGAQESVAIIDAALK 299 + + G KVT+ + +A ID+AL Sbjct: 370 ITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALS 429 Query: 300 YVDSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASS 359 VD+ R+ LGA QNRF+ AI+NL N N+N+++SRI+D D+A E + M+K+QIL QA + Sbjct: 430 KVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGT 489 Query: 360 SILAQAKQAPNSALSLL 376 S+LAQA Q P + LSLL Sbjct: 490 SVLAQANQVPQNVLSLL 506
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.6 bits (193), Expect = 3e-19 Identities = 49/217 (22%), Positives = 78/217 (35%), Gaps = 13/217 (5%) Query: 3 KSVLITGCSTGIGYVCAHALQKECFHVIA----SCRQDQDIERLTNEGLTC--IKLDLND 56 K ITG + GIG A L + H+ A + ++ + L E D+ D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 57 PESISSGVAQALELAEGKLYAVFNNGAYGQPGALEDLPTVALQAQFQTNFFGWHQLVREV 116 +I A+ + + N +PG + L +A F N G R V Sbjct: 69 SAAIDEITARIEREMGP-IDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 117 LPHMRKQGEGRIIQNSSVLGFAAMKYRGAYNASKFALEGWTDTLRLELMDTNIKVALIEP 176 +M + G I+ S AY +SK A +T L LEL + NI+ ++ P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 177 GPIETQFRQNALKAFEQWIDVESSAHRAAYEGQKQRL 213 G ET + + W D + + + Sbjct: 188 GSTETDMQWSL------WADENGAEQVIKGSLETFKT 218
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 49.4 bits (118), Expect = 6e-09 Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 20/145 (13%) Query: 12 MKILLTGGTGFIGSELLKMLT--THQVILL---------TRTPARAKQRLQHADV----G 56 MK L+TG GFIG + K L HQV+ + + AR + L Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARL-ELLAQPGFQFHKI 59 Query: 57 NTEYLDSLDSLEDLNDVDAVINLAGEPIADKRWSQEQKEIICNSRWKVTERIVELIHAST 116 + + + L + V R+S E +S I+E + Sbjct: 60 DLADREGMTDLFASGHFERVFISPHR--LAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 117 EPPSVFISGSAVGYYGDQQDHPFDE 141 ++ S S+V YG + PF Sbjct: 118 IQHLLYASSSSV--YGLNRKMPFST 140
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 26.7 bits (59), Expect = 0.007 Identities = 3/26 (11%), Positives = 8/26 (30%) Query: 35 SKFLSFIFWIVVLAGVGYVAWFYLVP 60 S+ + + ++ V L Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQ 79
>PF03309#Bvg accessory factor Length = 271 Score = 31.7 bits (72), Expect = 0.003 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 238 EHHAAESSPVEVIATGGQNNQLILNYIHDSDHSYENVTL---RIFAGRN 283 + + V V+ATG L+L + +H ++TL R+ RN Sbjct: 212 DVDGFSGADVAVVATGH-TAPLVLPDLRTVEHYDRHLTLDGLRLVFERN 259
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 38.1 bits (88), Expect = 9e-06 Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 5/106 (4%) Query: 1 MARRNDHTREELVNLTLSTVKDFLEENSYHELSLRKIANMIGYVPSTLVNIFGNYNLLLL 60 + TR+ + L + SL +IA G + F + + L Sbjct: 5 TKQEAQETRQHI----LDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 HAVAQTLDELQQ-EAVAATKNSKDTHQALFELAYCYHDFAQKHPHR 105 + + + E K D L E+ + R Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERR 106
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.5 bits (113), Expect = 4e-08 Identities = 29/210 (13%), Positives = 75/210 (35%), Gaps = 21/210 (10%) Query: 54 VKEIAVKANQNVQQDQLLILLNDDKAQ--AALVEAKAYLKDEQRKLKEFQRLVKRNAITQ 111 + + A+ + ++Q+ + ++ + L + ++ + + + + +L K + + Sbjct: 244 LHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK 303 Query: 112 TEIDAQKASVEIAEARLDAAKANLSDLNISAPFAGTVGFID-FSRGKMVSAGSELLTL-D 169 + L + I AP + V + + G +V+ L+ + Sbjct: 304 LR-QTTDNIGLL-TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVP 361 Query: 170 DLSVMELDLQVPERYLSMLSVGMEVHATTSAWNGVDFVGKVTGIDTRISAETL------- 222 + +E+ V + + ++VG A+ + G + G I+ + + Sbjct: 362 EDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRY-GYLVGKVKNINLDAIEDQRLGL 420 Query: 223 --NLRIRIEFDNPENH-----LKPGMLMQA 245 N+ I IE + L GM + A Sbjct: 421 VFNVIISIEENCLSTGNKNIPLSSGMAVTA 450 Score = 38.3 bits (89), Expect = 4e-05 Identities = 18/97 (18%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 43 SVVVASEVSGKVKEIAVKANQNVQQDQLLILLNDDKAQAALVEAKAYL---KDEQRKLKE 99 S + + VKEI VK ++V++ +L+ L A+A ++ ++ L + EQ + + Sbjct: 96 SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQI 155 Query: 100 FQRLVKRNAITQTEIDAQKASVEIAEARLDAAKANLS 136 R ++ N + + ++ + ++E + + + Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIK 192
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 774 bits (1999), Expect = 0.0 Identities = 307/1032 (29%), Positives = 516/1032 (50%), Gaps = 28/1032 (2%) Query: 3 LSDVSVKRPVAALVLSMLLCVFGFVSFTKLAVREMPDIESPVVSISTRYEGASATIIESQ 62 +++ ++RP+ A VL+++L + G ++ +L V + P I P VS+S Y GA A ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 ITSVLEDQLSGISGIDEISSTTRNSMS-RITITFELGYDLNTGVSDVRDAVARAQRSLPD 121 +T V+E ++GI + +SST+ ++ S IT+TF+ G D + V++ + A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 EADDPVVFKNNGSGEASLYINLSSSEMDRTQ--LTDYAERVLMDRFSLISGVSSIDLSGG 179 E + S + S TQ ++DY + D S ++GV + L G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 LYKVMYVKLKPDLMAGRSVTASDITAALRSENLESPGGEVRNDSTV------MSVRTART 233 Y + + L DL+ +T D+ L+ +N + G++ + S+ Sbjct: 181 QYAMR-IWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 234 YNTPEDFQYLVVKRASDNTPIYLKDVADVFIGAENENSTFKSDGVVNISLGVVPQSDANP 293 + PE+F + ++ SD + + LKDVA V +G EN N + +G LG+ + AN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 LEVAQSVRSEVDKIQKFLPDGTRLAIDYDATVFIERSIDEVYSTLFITGGLVILVLYIFI 353 L+ A+++++++ ++Q F P G ++ YD T F++ SI EV TLF LV LV+Y+F+ Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHH 413 RATLIP + VPV L+ +F FG+SIN +T+ ++L+IGL+VDDAIVVVEN+ Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 I-ERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVI 472 + E P A K ++ A++ +VL VF+P++F G G ++ +FS+ + ++ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 FSSLIALTLTPVLGSQILKANVK-----PNRFNQAVDKLFAKLEAGYRKALRGALKVRWA 527 S L+AL LTP L + +LK F + F Y ++ L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 528 APLVIVACMGGSYGLMNQVPTQLTPQEDRGVIFAFVRGADATSYNRMSANMDIVEDRLMP 587 L+ + G L ++P+ P+ED+GV ++ + R +D V D + Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 588 LLGQGFLKSFSIQTPAFGGQAGDQTGFVIMILEDWNERDV---TAQEALNQVRKSLAGIP 644 F++ +F GQ G + L+ W ER+ +A+ +++ + L I Sbjct: 600 NEKANVESVFTVNGFSFSGQ-AQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 645 DVRVFPF-MPGFRG-GSSEPVQFVL---GGSDYDELLVWAEMLKNKAEESP-MMEGAEID 698 D V PF MP G++ F L G +D L L A + P + + Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 699 YSEKTPELLVSVDKRRAAELGVSVQDISETLEIMLGGKSETTYVDRGEEYDVYLRGDENS 758 E T + + VD+ +A LGVS+ DI++T+ LGG ++DRG +Y++ D Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 759 FNNAADLSQIYLRTTSGELVTLDTVTKIEEVAASIRLSHYNKQKSITITANLSEGYTLGE 818 D+ ++Y+R+ +GE+V T V S RL YN S+ I + G + G+ Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 819 ALDFLDQEAIDNLPGDISVSYSGESKDFKENQASVAVVFALALLVAYLVLAAQFESFVNP 878 A+ ++ A LP I ++G S + + + A++ +V +L LAA +ES+ P Sbjct: 839 AMALMENLA-SKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIP 897 Query: 879 LVVMFTVPMGVFGGFLGLVVMSQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDR-GI 937 + VM VP+G+ G L + +Q ++Y +G++ IG+ KN ILIVEFA L ++ G Sbjct: 898 VSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 938 EFEKAITDAAARRLRPIMMTAFTTLAGAIPLIMSTGAGYESRVAVGTVIFFGMGFATLVT 997 +A A RLRPI+MT+ + G +PL +S GAG ++ AVG + GM ATL+ Sbjct: 958 GVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLA 1017 Query: 998 LFVIPAMYRLIS 1009 +F +P + +I Sbjct: 1018 IFFVPVFFVVIR 1029
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 37.6 bits (87), Expect = 2e-05 Identities = 37/204 (18%), Positives = 64/204 (31%), Gaps = 29/204 (14%) Query: 2 KNAILLLSALTMSLPTFAAQEQTHQSYLYLGTGNVGFDTP----DFGSDRDSGWSTPHIT 57 K AI + AL A + + Y G + + G ++ + Sbjct: 3 KTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHEN-----QLG 57 Query: 58 VG--WGYHVNQYLAFE-GALRYSQNELKNDALKTDLDLHYYQAGMSAVVTSDNLGDTPLS 114 G GY VN Y+ FE G + K + + Q + D L Sbjct: 58 AGAFGGYQVNPYVGFEMGYDWLGRMPYKG---SVENGAYKAQGVQLTAKLGYPITDD-LD 113 Query: 115 LFGRVTALGTQAEMYVPNEQKI-----ADDTGALFNIGAGIHWDMSKDIWLRAEYIY--N 167 ++ R+ M + K DTG G+ + ++ +I R EY + N Sbjct: 114 IYTRLGG------MVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNN 167 Query: 168 VADMGFDDFYDSYEGVQVSLGKRF 191 + D + + + RF Sbjct: 168 IGDAHTIGTRPDNGMLSLGVSYRF 191
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 582 bits (1502), Expect = 0.0 Identities = 296/603 (49%), Positives = 412/603 (68%), Gaps = 17/603 (2%) Query: 16 VACTLSLLSALPLHASELDWPDQPFRYYADNDSLKELLNNFGANYRVSVSVSDKVNDRVS 75 + TL LLS+ A ELDW P+ Y A +SL++LL +FGANY +V VSDK+ND+VS Sbjct: 13 LTGTLLLLSS-YSWAQELDWLPIPYVYVAKGESLRDLLTDFGANYDATVVVSDKINDKVS 71 Query: 76 GRFTPEDPAEFLDYLAQVYNLMWYFDGAVLHVYKATETRSRLLQLELLTARELRSTLIST 135 G+F ++P +FL ++A +YNL+WY+DG VL+++K +E SRL++L+ A EL+ L + Sbjct: 72 GQFEHDNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQALQRS 131 Query: 136 GVWDSRYGWRAAENKGLVYLAGPPRYVDLVVQTAEALESRLVQKSNSTDELFVEIIPLKY 195 G+W+ R+GWR + LVY++GPPRY++LV QTA ALE + +S T L +EI PLKY Sbjct: 132 GIWEPRFGWRPDASNRLVYVSGPPRYLELVEQTAAALEQQTQIRSEKTGALAIEIFPLKY 191 Query: 196 ASATDREITYRDQAVTVPGIASVLSRVLSGVQTQIKATKESEETDINTAATTTKNVSVHG 255 ASA+DR I YRD V PG+A++L RVLS Q + I AAT Sbjct: 192 ASASDRTIHYRDDEVAAPGVATILQRVLSDATIQ---QVTVDNQRIPQAATRAS-----A 243 Query: 256 GASVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDW 315 A VEA+P LNAIIVRD+ R+P+Y++L+ LD+P +RIEVALSIVDI+A+ L++LGVDW Sbjct: 244 QARVEADPSLNAIIVRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDW 303 Query: 316 RAGIEVGNNSILDIKTTGDVDGGDVTLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQV 375 R GI GNN + IKTTGD + S SL+DA L+YLLA++ LLE++GSAQV Sbjct: 304 RVGIRTGNNHQVVIKTTGDQSN----IASNGALGSLVDARGLDYLLARVNLLENEGSAQV 359 Query: 376 VSRPTLLTQENVEAVLNNSSTFYIKLIGRETAALEEVTYGTLLRIVPRIVGDRFVERPEI 435 VSRPTLLTQEN +AV+++S T+Y+K+ G+E A L+ +TYGT+LR+ PR++ ++ EI Sbjct: 360 VSRPTLLTQENAQAVIDHSETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQG--DKSEI 417 Query: 436 NLSLHLEDGAQIPDG-GVDDVPSIRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPL 494 +L+LH+EDG Q P+ G++ +P+I +T + T+A V GQSL+IGG+YRDE+S L KVPL Sbjct: 418 SLNLHIEDGNQKPNSSGIEGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPL 477 Query: 495 LGDIPYLGALFRSTTDTTRRTVRMFIIEPRIVVDGIGDNVLIGNEYDLRPKLGTLNNISN 554 LGDIPY+GALFR ++ TRRTVR+FIIEPRI+ +GI ++ +GN DLR + T++ ISN Sbjct: 478 LGDIPYIGALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLALGNGQDLRTGILTVDEISN 537 Query: 555 NSAELKSALALYSCTSQVQAERHQQDLLSQGKSSLLSQCELPSGQKGWRVQIKECDGSEN 614 S L L C +A+ Q+ L KSS L+QC++ GWRV C +++ Sbjct: 538 QSTTLNKLLGGSQCQPLNKAQEVQKWLSQNNKSSYLTQCKM-DKSLGWRVVEGACTPAQS 596 Query: 615 HCV 617 CV Sbjct: 597 WCV 599
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 28.5 bits (63), Expect = 0.002 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Query: 13 DDVKAKLEEQAKAANEAVNEAIKNLETNADDPSKLAELQH 52 DD+ ++ +QAK A E + + +E+NA + + QH Sbjct: 315 DDIVEQIAQQAKEAGEVARQ--QAVESNAQAQQRYED-QH 351
>PF09025#YopR Core Length = 143 Score = 61.2 bits (148), Expect = 3e-14 Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 9/123 (7%) Query: 101 PSEQKEALWYALSQERSVKGTDKASSELLASLEQELLGSFSGRLLADP----PKDREELK 156 P+ + + E+++ G A+ LA LE LG + A P DR ELK Sbjct: 24 PAVDQVLAF-----EQALGGEPPAAGRRLAGLENGALGERLLQRFAQPLQGLEADRLELK 78 Query: 157 VLLSEHFPLGAQKEQALWHSWAELKDIPDQEPLLDMVREELSFVIQINSMVKNMLTYSHK 216 +L PLG Q++ L ++ P E L + R EL +I +N M+ N++ SHK Sbjct: 79 AMLRAELPLGRQQQTFLLQLLGAVEHAPGGEYLAQLARRELQVLIPLNGMLDNLVRNSHK 138 Query: 217 LEL 219 L+L Sbjct: 139 LDL 141
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 65.0 bits (158), Expect = 3e-14 Identities = 32/168 (19%), Positives = 72/168 (42%), Gaps = 8/168 (4%) Query: 26 TELYTGVSQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDNAQIAFAVDALKRKGYPRE 85 L++ +S ++G +++ L + + + V ++ L ++G P+ Sbjct: 51 RTLFSNLSDQDGGAIVAQLTQMNIPYRFANG---SGAIEVPADKVHELRLRLAQQGLPKG 107 Query: 86 QFSTLKEVFPKDDLISSPLAERARLIYAKSQELSSTLSQIDGVLVARVHVVL-EDQNLRP 144 + E+ ++ S +E+ A EL+ T+ + V ARVH+ + + Sbjct: 108 G-AVGFELLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVR 166 Query: 145 GERPTPASASVFIKHAADVALD-SYVPQIKLLVNNSIEGLNYDRISVV 191 ++ SASV + ALD + + LV++++ GL +++V Sbjct: 167 EQK--SPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLV 212
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 34.8 bits (79), Expect = 1e-04 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 18/156 (11%) Query: 52 EAYELERQRGYQDGIYQAKIENAETMLATLARCNEYYLQVE-------QKMTGVVLDAVR 104 + Y+ +G + G+ +AK + A +E+ ++ ++ + L+A R Sbjct: 70 QGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAAR 129 Query: 105 KIINSFDDVDTTASV--VREALQ---LVSNQKQVILHVHPEQVTEVREKVSSILSDFPEV 159 ++I VD +A + +++ LQ L S + Q L VHP+ + V + + + LS + Sbjct: 130 QVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQ--LRVHPDDLQRVDDMLGATLS----L 183 Query: 160 GYVEVIADARLKNGGCILETEIGIIDASIDGQLQAL 195 + D L GGC + + G +DAS+ + Q L Sbjct: 184 HGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>PF05932#Tir chaperone protein (CesT) Length = 127 Score = 64.1 bits (156), Expect = 3e-16 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 10/123 (8%) Query: 1 MVNGFISTLLNDFAKRCQIETLEFDEEGCCRLIIDNEVAITL--RSNEEKLTLIGLISGE 58 M N F TLL+DF++ +++ L FD+ G C +IIDN A+TL E+L LIGL+ Sbjct: 1 MSNLFYKTLLDDFSRSLEMQPLVFDDHGTCNMIIDNTFALTLSCDYARERLLLIGLLE-- 58 Query: 59 KPHPDVYFKHMKAA----LTKDEPYVCWDDDAG-YIGFIHIHQTMLTETYFETSIAQFVD 113 PH D+ + + A L P + D+ +G Y + I + L+ + +A ++ Sbjct: 59 -PHKDIPQQCLLAGALNPLLNAGPGLGLDEKSGLYHAYQSIPREKLSVPTLKREMAGLLE 117 Query: 114 WLK 116 W++ Sbjct: 118 WMR 120
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 33.9 bits (77), Expect = 0.001 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Query: 25 GKLNVGGKEYKIDADTQQFVRSNPSDSAVARFFEATGKLFREGNTD-SVAKAITKSVFDN 83 G+LN+GGK Y+I + Q +R NP S + F E GK+F + S+A+ +T ++ Sbjct: 32 GELNIGGKRYRIIDN--QVLRLNPH-SGFSLFREGVGKIFSGKMFNFSIARNLTDTLHAA 88 Query: 84 ELGQAQRLQS 93 + +Q L+S Sbjct: 89 QKTTSQELRS 98
>PF05932#Tir chaperone protein (CesT) Length = 127 Score = 40.9 bits (96), Expect = 1e-06 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 5/105 (4%) Query: 6 FSEEGRCQLLVDDRYVIYFSATDNNDLILSVAFGGLEKTGELRVKGLELIAHANYFAIAE 65 F + G C +++D+ + + S D L + G LE ++ + + + Sbjct: 24 FDDHGTCNMIIDNTFALTLSC-DYARERL-LLIGLLEPHKDIP---QQCLLAGALNPLLN 78 Query: 66 GGLTLSLAPNGRQLVLAGRKPIEHLDAASLSTWFHALNEQAQLWQ 110 G L L P E L +L L E + W+ Sbjct: 79 AGPGLGLDEKSGLYHAYQSIPREKLSVPTLKREMAGLLEWMRGWR 123
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 355 bits (912), Expect = e-122 Identities = 126/341 (36%), Positives = 190/341 (55%), Gaps = 13/341 (3%) Query: 24 QNLIGESPAFLAVLDKVSQLAPIERPVLIIGERGTGKELIAQRLHYLSKRWDKPLLSLNC 83 L+G S A + +++L + ++I GE GTGKEL+A+ LH KR + P +++N Sbjct: 137 MPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINM 196 Query: 84 ATLSEGLIDSELFGHESGSFTGSKGKHKGRFERAEGGTLFLDELATAPLLVQEKLLRVIE 143 A + LI+SELFGHE G+FTG++ + GRFE+AEGGTLFLDE+ P+ Q +LLRV++ Sbjct: 197 AAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQ 256 Query: 144 YGEYERVGGHTALTADVRLVCATNADLPKLAEQGDFRADLLDRLAFDVIMLPPLRERKED 203 GEY VGG T + +DVR+V ATN DL + QG FR DL RL + LPPLR+R ED Sbjct: 257 QGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAED 316 Query: 204 ILSLAEHYAIKMCRELQLEYFVGFTEEAQQSLLDYEWPGNVRELKNVIERAIYRHGLNSD 263 I L H+ + +E F +EA + + + WPGNVREL+N++ R + + Sbjct: 317 IPDLVRHFVQQAEKEGLDV--KRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVI 374 Query: 264 PIEHLIFNPFQTGWDNSLGHTAAQEETET-----------TEATPHSAIHFPLDYKQWQE 312 E + D+ + AA+ + + A+ A+ Y + Sbjct: 375 TREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLA 434 Query: 313 DQDIELLNRALEEAKFNQRQAAELLGLSYHQLRGMVRKYGL 353 + + L+ AL + NQ +AA+LLGL+ + LR +R+ G+ Sbjct: 435 EMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 26.1 bits (57), Expect = 0.017 Identities = 7/29 (24%), Positives = 17/29 (58%) Query: 37 SSQDLERLQVLSEKAEAMQSRVETLERIL 65 +++D Q L K+E + ++ +T ++ L Sbjct: 122 NAEDPAARQALIGKSEGLVNQFKTTDQYL 150
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 45.6 bits (108), Expect = 2e-07 Identities = 30/205 (14%), Positives = 66/205 (32%), Gaps = 31/205 (15%) Query: 69 QSIEVNAGQMVKKGDVLAVLNPDEYSLLEKQARANYTLADVQYERSKKLRKEQVVSEQDF 128 + +E V K + + E +L + + E KLR+ Sbjct: 260 KYVEAVNELRVYKSQLEQI----ESEILSAKEEYQLVTQLFKNEILDKLRQ--------- 306 Query: 129 DAAKANHNSAKAQWNQAKANLRYTKLVAPYDGTISYLPAENH-EYVAAKEGVMNI-QTNQ 186 N + + + + + + AP + L V E +M I + Sbjct: 307 --TTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDD 364 Query: 187 LMKVLFQLPDHLLSKFTQGANAYATMTFDAFPEQSF-----ELTFQEIDTEADPKTG-SY 240 ++V + + + G N A + +AFP + ++ +D D + G + Sbjct: 365 TLEVTALVQNKDIGFINVGQN--AIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVF 422 Query: 241 KVTM------VMARPEGVGILPGMS 259 V + + + + + GM+ Sbjct: 423 NVIISIEENCLSTGNKNIPLSSGMA 447 Score = 36.3 bits (84), Expect = 2e-04 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 17/114 (14%) Query: 54 AGDRAVLAFRVPGLLQSIEVNAGQMVKKGDVLAVLNPDEYSLLEKQARANYTLADVQYER 113 +G + +++ I V G+ V+KGDVL L + +++ A ++ R Sbjct: 93 SGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTR 152 Query: 114 SKKLRKE-----------------QVVSEQDFDAAKANHNSAKAQWNQAKANLR 150 + L + Q VSE++ + + W K Sbjct: 153 YQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.7 bits (116), Expect = 2e-08 Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 37/181 (20%) Query: 67 GEVSRVLVKEGDKVVKGDVIATLDPTDYQLDVDNASARFSVVD-SQYRRSA--------- 116 V ++VKEG+ V KGDV+ L + D + Q R Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 117 ------------------PLVKKGLLAKSQFDEFAAQRQIALAELELAKLRLSFTELKAP 158 +++ L K QF Q Q EL L K R + A Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQF--STWQNQKYQKELNLDKKRAERLTVLAR 222 Query: 159 VDGIISRVNVDQFENIQVGQYIVNIHSVDRVEVL------IQLPDRLHVNQSPKEELLSS 212 ++ + V++ + +++ ++ + VL ++ + L V +S E++ S Sbjct: 223 INRYENLSRVEK-SRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESE 281 Query: 213 I 213 I Sbjct: 282 I 282 Score = 34.8 bits (80), Expect = 5e-04 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 8/79 (10%) Query: 134 AQRQIALAELELAKL--RLSFTELKAPVDGIISRVNV-DQFENIQVGQYIVNIHSVDR-- 188 I L LELAK R + ++APV + ++ V + + + ++ I D Sbjct: 307 TTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTL 366 Query: 189 -VEVLIQ--LPDRLHVNQS 204 V L+Q ++V Q+ Sbjct: 367 EVTALVQNKDIGFINVGQN 385
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 506 bits (1305), Expect = e-165 Identities = 226/1053 (21%), Positives = 444/1053 (42%), Gaps = 64/1053 (6%) Query: 20 IAAYFIHNRVISWMVSLIFLIGGVSAFFGLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 79 +A +FI + +W++++I ++ G A L + P V +YPGA Q V++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 80 VTYPLEKAIQQLTYVDEVNSISSR-GLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGS 138 VT +E+ + + + ++S S G IT+T ++ PD +++ K+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQV---QVQNKLQLATPL 117 Query: 139 LPPGVNEPSV-IDDFGDVYGILLAVTGDGYSY--KELLDYVD-YLRRELELVDGVSKVSV 194 LP V + + ++ Y ++ D ++ DYV ++ L ++GV V + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 195 SGQQQEQVFIEISMKKLSSLGLSPNTVFNLLSTQNVVSDAGAIRIGDEYI-------RIQ 247 G Q + I + L+ L+P V N L QN AG + G + I Sbjct: 178 FGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQL-GGTPALPGQQLNASII 235 Query: 248 PTGEFQSVDELGDLLLTESGAQGLIFLKDVAEIKRGYVDVPTNIINYNGQLALNLGVSFA 307 F++ +E G + L + ++ LKDVA ++ G + I NG+ A LG+ A Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARINGKPAAGLGIKLA 294 Query: 308 QGVNVVKVGKAFDRRVAELKYQQPVGIQISEIYNQPKEVDKSVSGFVISLAQAVGIVIVV 367 G N + KA ++AEL+ P G+++ Y+ V S+ V +L +A+ +V +V Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 368 LLFFMG-LRSGLLIGLILLLTVLGTFIFMKYLAIDLQRISLGALVIALGMLVDNAIVVVE 426 + F+ +R+ L+ + + + +LGTF + + +++ +V+A+G+LVD+AIVVVE Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 427 GILIGTQKGRTRLQAAT-DIVTQTKWPLLGATVIAVTAFAPIGLSEDSTGEYCGTLFTVL 485 + + + + AT ++Q + L+G ++ F P+ STG + Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 486 LISLMLSWFTAISLTPFFADIFFKGQKIKSGEGED------NDPYNGIVFVMYKKFLSFC 539 + ++ LS A+ LTP K + E + N ++ V Y + Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVN-HYTNSVGKI 533 Query: 540 MRRAWFTVVVLVAGLAASVYGFTYVKQAFFPSSTTPIFQLDVWLPEGTDIRATNDTLKEL 599 + +++ +A V F + +F P +F + LP G T L ++ Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593 Query: 600 EGWL--AEQDHVDHITTTAGKGLQRFMLTYAPEKSYAAYGEIT-----TRVENYEALAPL 652 + E+ +V+ + T G +++ + A ++ R + + + Sbjct: 594 TDYYLKNEKANVESVFTVNG-------FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 653 MDRFREHIKTNYPEINYKLK---QIELGPGGGAKIE-ARIIGSDPTVLRTIAAQVMDVMY 708 + R + + +ELG G E G L Q++ + Sbjct: 647 IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA 706 Query: 709 ADPGA-TNIRHDWRERTQVLEPQFNESQARRYGITKSDVDDFLSMSFSGMTIGLYRDGTT 767 P + ++R + E T + + ++ +A+ G++ SD++ +S + G + + D Sbjct: 707 QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 768 LMPIVARLPEDERIDIRNIEGMKIWSPAQSEFIPLQQVTMGYDMRWED--PIIVRKNRKR 825 + + + R+ +++ + + S A E +P T W P + R N Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRS-ANGEMVPFSAFT---TSHWVYGSPRLERYNGLP 822 Query: 826 MLTVMADPD-ILGEETAATLQKRLQPAIEAIEMPPGYSLEWGGEYESSGKAKASLFSTMP 884 + + + A L + L A ++P G +W G + + + Sbjct: 823 SMEIQGEAAPGTSSGDAMALMENL-----ASKLPAGIGYDWTGMSYQERLSGNQAPALVA 877 Query: 885 MGYLFMFLITIFLFNSIKEPLIVWLTVPLALIGVTTGLLALNTPFGFMALLGFLSLSGMV 944 + ++ +FL L+ S P+ V L VPL ++GV N ++G L+ G+ Sbjct: 878 ISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLS 937 Query: 945 LKNGIVLLDQI-EIEMKSGKEAYDAVVDAAVSRVRPVCMAAITTILGMIPLLPDI----- 998 KN I++++ ++ K GK +A + A R+RP+ M ++ ILG++PL Sbjct: 938 AKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSG 997 Query: 999 FFKPMAVTIMFGLGFATVLTLIVVPVLYRLFHR 1031 + + +M G+ AT+L + VPV + + R Sbjct: 998 AQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 53.2 bits (128), Expect = 1e-09 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 23/150 (15%) Query: 136 SPEEVEKVSPLRA-----TELYLEHLKNAWNHTKPNHNLADQD-VTITVPASFDPAARDL 189 +P + + P++ + + L++ N + V + VP R Sbjct: 66 TPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRA 125 Query: 190 TAEAARNVGFVHLTLLEEPQAALYNWIDNSNDKWRDEVEVGDIVLVVDIGGGTTDLSLVE 249 E+A+ G + L+EEP AA I +VVDIGGGTT+++++ Sbjct: 126 IRESAQGAGAREVFLIEEPMAAA---IGAGLPVSEATGS-----MVVDIGGGTTEVAVIS 177 Query: 250 VTEDDGNLTLNRIAVGEHILLGGDNMDLAL 279 LN + + +GGD D A+ Sbjct: 178 ---------LNGVVYSSSVRIGGDRFDEAI 198
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 56.3 bits (136), Expect = 2e-10 Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 36/181 (19%) Query: 165 VVVTVPASFDETARKLTLEAAELAGLKKIVLLEEPQAVCYDWYARHQQTAAD-ELKELPL 223 V+V VP + R+ E+A+ AG +++ L+EEP A A + E Sbjct: 110 VLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAA---------IGAGLPVSEATG 160 Query: 224 ILVCDVGGGTTDLSLIEASFSSQNELALDRIGVGEHLMLGGDNLDLALAHLAESRLSQNK 283 +V D+GGGTT++++I L+ + + +GGD D A+ + Sbjct: 161 SMVVDIGGGTTEVAVIS----------LNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLI 210 Query: 284 GEQSKKLTAASLTKLIQQTRKAKENLLSASAPEEVKITMLGSGSKLL-GGTKSIGLSKQE 342 GE TA + K + SA +EV+ + G L G + L+ E Sbjct: 211 GEA----TA----------ERIKHEIGSAYPGDEVR-EIEVRGRNLAEGVPRGFTLNSNE 255 Query: 343 V 343 + Sbjct: 256 I 256
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 41.4 bits (97), Expect = 2e-07 Identities = 17/52 (32%), Positives = 29/52 (55%) Query: 1 MRNTKGFTLIELVVCIVILGVVSVVALPKFLGIQKDARIAVLYGAREALMTA 52 +GFTL+E++V IVI+GV++ + +P +G ++ A AL A Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENA 55
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.004 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 134 FYELLIATVVKN---AVMILVMLGVMFYMSWKLTIVVLVLLPIVIGFMYLFKKLSTESYR 190 F +L I VVK A+M++ ++ +F + + T++ + +P+V+ + S Sbjct: 332 FVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSIN 391 Query: 191 NM 192 + Sbjct: 392 TL 393
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 26.7 bits (59), Expect = 0.010 Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 1/56 (1%) Query: 3 FTALFPQFIDPSASLFTQYIVFASTFVVFELSWLTFYGLLGVKTSDWLFVKGRAKL 58 F + L T+ ++ S V W+ L G + + + ++ Sbjct: 198 VVEQFIHM-KQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRVMLRQEKRRV 252
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 53.7 bits (129), Expect = 4e-11 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 16/125 (12%) Query: 27 LICVDDQ---REVLSAVLQDLQLLSQWLNIEDCESADEVLELMDELDAEGEMIALIISDH 83 ++ DD R VL+ L D L + A L+++D Sbjct: 6 ILVADDDAAIRTVLNQALSRAG--------YDVRITSNAATLWRWIAAGD--GDLVVTDV 55 Query: 84 VMPGKTGVELLTEISKDSRFIRARKVLLTGQTTHTDTINAINSAGIDRYFEKPWQAEQLV 143 VMP + +LL I K ++++ Q T I A G Y KP+ +L+ Sbjct: 56 VMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASE-KGAYDYLPKPFDLTELI 112 Query: 144 ECVRN 148 + Sbjct: 113 GIIGR 117
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.1 bits (96), Expect = 3e-07 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 7/81 (8%) Query: 59 FVAELDGVIVGYSDVQPS----GLVDHFFCHHEYQGQGVGRVLMTHVLKQAEAKGLNRID 114 F+ L+ +G ++ + L++ +Y+ +GVG L+ ++ A+ + Sbjct: 68 FLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLM 127 Query: 115 SE---VSITARPFYEHMGFTV 132 E ++I+A FY F + Sbjct: 128 LETQDINISACHFYAKHHFII 148
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.5 bits (66), Expect = 0.005 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 5/80 (6%) Query: 75 DNQIVGQLECRYPVLDEEGRKFGYINLFYLLPEFRNQGLGRQLQDFLLKLFANHGCRYAR 134 +N +G+++ R + I + ++R +G+G L ++ + Sbjct: 73 ENNCIGRIKIR-----SNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLM 127 Query: 135 LRYIPGNDAGERFYYKNGWR 154 L N + FY K+ + Sbjct: 128 LETQDINISACHFYAKHHFI 147
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.6 bits (199), Expect = 7e-20 Identities = 29/124 (23%), Positives = 57/124 (45%) Query: 2 KILVVEDEPRLGEQILETLENNGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKLDGLT 61 ILV +D+ + + + L G+ ++ + + + D +V D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLKGIRDENINTPVVILSARDTLSQRVEGLNAGADDYLTKPFEMVELTARLRAQLRRASG 121 +L I+ + PV+++SA++T ++ GA DYL KPF++ EL + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 NASP 125 S Sbjct: 125 RPSK 128
>PF06580#Sensor histidine kinase Length = 349 Score = 35.2 bits (81), Expect = 5e-04 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 16/82 (19%) Query: 365 IIRVHSTLDKDNIHIIVEDDGPGIPAEQLCQVIKRGYRLDETTPGSGLGLNIVSE-MAHS 423 I + T D + + VE+ G L T +G GL V E + Sbjct: 280 KILLKGTKDNGTVTLEVENTGSLA--------------LKNTKESTGTGLQNVRERLQML 325 Query: 424 YRGQLELS-ESKMGGLKATLIL 444 Y + ++ K G + A +++ Sbjct: 326 YGTEAQIKLSEKQGKVNAMVLI 347
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.5 bits (79), Expect = 7e-05 Identities = 13/54 (24%), Positives = 21/54 (38%) Query: 94 VSPLYFGQGAGSALFDELETRLLSTPVMQISLKALDTNKQGLNFYKKCGFVRSG 147 V+ Y +G G+AL + + L+ D N +FY K F+ Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.023 Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 1/52 (1%) Query: 172 ILVAPEARGKGYGKRLLAHLVSEVKSRQR-KVRYRVNIENTPSIKLCQSLGF 222 I VA + R KG G LL + K + N + F Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 58.8 bits (142), Expect = 4e-12 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 26 EVIEQEEELDLLAQELSSAEPEPEPEPEPEPEP---EPEPEPEPEPEPEPE-PEPEPEPE 81 +VIE ++ + + P+ P EPEPEPEP PEP E P +P+ Sbjct: 34 QVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 93 Query: 82 PEPEPEPEPEPKLQLQ 97 P+P+P+P+P K+Q Q Sbjct: 94 PKPKPKPKPVKKVQEQ 109 Score = 47.7 bits (113), Expect = 2e-08 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%) Query: 31 EEELDLLAQELSSAEPEPEPEPEPEPEPE-----PEPEPEPEPEPEPEPEPEPEPEPEPE 85 E + EPEPEPEP PEP E +P+P+P+P+P+P + + +P+ + + Sbjct: 56 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVK 115 Query: 86 PEPEPEPK 93 P Sbjct: 116 PVESRPAS 123 Score = 37.3 bits (86), Expect = 5e-05 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 62 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPKLQLQYAEPE 102 P P+ P P EPEPEPEP PEP + + Sbjct: 52 PADLEPPQAVQPPPE-PVVEPEPEPEPIPEPPKEAPVVIEK 91
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.4 bits (162), Expect = 4e-14 Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 6/166 (3%) Query: 2 AIKVLVVDDSSFFRRRVSEIINSESRLEVIDVAVNGREAVEKAKTLKPDVITMDIEMPVM 61 +LV DD + R +++ ++ + + N D++ D+ MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 DGITAVREIMAASP-TPILMFSSLTHDGAKATLDALDAGALDFLPKKFEDIARNRDEAVS 120 + + I A P P+L+ S+ + + A + GA D+LPK F D+ Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSA--QNTFMTAIKASEKGAYDYLPKPF-DLTELIGIIGR 117 Query: 121 LLQQRVIQIASKRAFMRRPIARPAAAATSSTARPLTSRTATPTASV 166 L + + + + + +A + +R ++ Sbjct: 118 ALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTL 163
>PF06580#Sensor histidine kinase Length = 349 Score = 44.1 bits (104), Expect = 1e-06 Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 18/104 (17%) Query: 449 ETDLDKNLVEALADPLI--HLVRNSVDHGIEMPDDRAKAGKSRTGKVVLSASQEGDHIEL 506 E ++ +++ P++ LV N + HGI + GK++L +++ + L Sbjct: 243 ENQINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTL 294 Query: 507 AIVDDGGGMDPNKLRGIAVK--------RGMMDEDAAARLSDKE 542 + + G N + + +A +LS+K+ Sbjct: 295 EVENTGSLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQ 338
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.9 bits (223), Expect = 3e-24 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 10 KILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGI 69 IL+ DD + +R ++ L G++ + T + GD D VVTD MP Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 70 DLLKHIRADAELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPF 114 DLL I+ LPVL+++A+ I+A++ G Y+ KPF Sbjct: 64 DLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 62.5 bits (151), Expect = 8e-14 Identities = 45/207 (21%), Positives = 94/207 (45%), Gaps = 7/207 (3%) Query: 48 WVPNFDESEEEQVLELTEEQIELIKQG--AYQEGLYQGQEAGFKQGYDKGKEEGIQAGHA 105 W P+ + + + + E + +I++ + ++ L Q Q +QGY G EG Q GH Sbjct: 10 WTPDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHK 69 Query: 106 EGLELGKAEGVTAGQEYIQQQVET----FMDLANQFAQPLELMNAQVEKQLVDMVLCLVK 161 +G + G A+G+ G + Q L ++F L+ +++ + +L+ M L + Sbjct: 70 QGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAAR 129 Query: 162 EVVHVEVQTNPQIILDTVKQSVEALPISGHPITLHLNPDDVAIIRSAYGEEELDCRNWTL 221 +V+ + ++ ++Q ++ P+ L ++PDD+ + G L W L Sbjct: 130 QVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLG-ATLSLHGWRL 188 Query: 222 VAEPALNRGDVQIAAGESSISYRMEER 248 +P L+ G +++A E + + R Sbjct: 189 RGDPTLHPGGCKVSADEGDLDASVATR 215
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 291 bits (746), Expect = 3e-99 Identities = 107/330 (32%), Positives = 200/330 (60%) Query: 20 DVSSMTGEEKAAILLLSLNENDAAGIIRHLEPKQVQRVGSAMARAKDLSQDKVSGVHRAF 79 DVS++TG++KAAILL+S+ ++ + ++L ++++ + +A+ + ++ + V F Sbjct: 11 DVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEF 70 Query: 80 LEDIQKYTNIGMGSEDFMRNALVAALGEDKANNLVDQILLGTGSKGLDSLKWMDPRQVAS 139 E + I G D+ R L +LG KA ++++ + S+ + ++ DP + + Sbjct: 71 KELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILN 130 Query: 140 IIVNEHPQIQTIVLSYLEADQSAEILSQFPERVRLDLMMRIANLEEVQPSALAELNEIME 199 I EHPQ ++LSYL+ +++ ILS P V+ ++ RIA ++ P + E+ ++E Sbjct: 131 FIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLE 190 Query: 200 KQFAGQAGAQAAKIGGLKAAAEIMNYLDNNVEGILMEQIRDQDEDMATQIQDLMFVFENL 259 K+ A + GG+ EI+N D E ++E + ++D ++A +I+ MFVFE++ Sbjct: 191 KKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDI 250 Query: 260 VEVDDQGIQKLLRDVPQDVLQRALKGADDSLREKVFKNMSKRAAEMMRDDIEAMPPVRVA 319 V +DD+ IQ++LR++ L +ALK D ++EK+FKNMSKRAA M+++D+E + P R Sbjct: 251 VLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRK 310 Query: 320 DVEAAQKEILAIARRMADAGEIMLSGGADE 349 DVE +Q++I+++ R++ + GEI++S G +E Sbjct: 311 DVEESQQKIVSLIRKLEEQGEIVISRGGEE 340
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 277 bits (709), Expect = 5e-88 Identities = 146/557 (26%), Positives = 254/557 (45%), Gaps = 40/557 (7%) Query: 47 GDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYLDQQKINY 105 L ++ L+++ S VA++V + W K P+ R L ++ ++ L Q I Y Sbjct: 17 NRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPY 76 Query: 106 KL--DGNTISVESSDYNSIKLGMVRAGVNQATAAGDDILLQDMGFGVSQRLEQERLKLSR 163 + I V + + ++L + + G+ + A G + LL FG+SQ EQ + + Sbjct: 77 RFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFE-LLDQEKFGISQFSEQVNYQRAL 135 Query: 164 ERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDSIVD 223 E +LA+ IE + V+ ARV LA+PK S+FVR + SASV +TL G L + ++ ++V Sbjct: 136 EGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVH 195 Query: 224 MVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLP 283 +V+SAV G+ +T+ DQ G LL+ + + + E ++ +I+++L P Sbjct: 196 LVSSAVAGLPPGNVTLVDQSGHLLTQSN-TSGRDLNDAQLKFANDVESRIQRRIEAILSP 254 Query: 284 ILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNGNMVA-----GIPGA 338 I+G GN AQV Q+DF+ EQT +++ PN ++++ N V G+PGA Sbjct: 255 IVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGA 314 Query: 339 LSNQPPADASIP-----------QDVAQMKDGTLTGQG---SVRKESTRNFELDTTISHE 384 LSNQP P Q+ Q T + S ++ T N+E+D TI H Sbjct: 315 LSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHT 374 Query: 385 RKQTGTLARQTVSVAIKDRRTVNPDTGEVTYTPLSESEINAIRQVLIGTVGFDENRGDLL 444 + G + R +V+V + + + PL+ ++ I + +GF + RGD L Sbjct: 375 KMNVGDIERLSVAVVVNYKTLA-----DGKPLPLTADQMKQIEDLTREAMGFSDKRGDTL 429 Query: 445 NVLSVKFAEPELEQMVDPPIWEHPNFNDWVRWFASALVIIVVILVLVRPAMKKLLNPASG 504 NV++ F+ + + P W+ +F D + L+++VV +L R K + P Sbjct: 430 NVVNSPFSAVD-NTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWR----KAVRPQLT 484 Query: 505 DEDEMYGPDGLPIGADGETSLIGSDIESGELFEFGSSIDLPN--LHKDEDVLKAVRALVA 562 E E + L + E + + +R + Sbjct: 485 RRVEEAKAAQEQAQVRQE----TEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSD 540 Query: 563 NEPELAAQVVKNWMDEN 579 N+P + A V++ WM + Sbjct: 541 NDPRVVALVIRQWMSND 557
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 59.7 bits (144), Expect = 3e-15 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 3/101 (2%) Query: 3 VDGIQAEMRAMMVEATNTAPTATGAKVGADFGDLLTKAINNVNSLQKASGDLQTRFDRGD 62 ++G+ ++++A + A F L A++ ++ Q A+ +F G+ Sbjct: 6 IEGVISQLQATAMSARAQESLPQPT---ISFAGQLHAALDRISDTQTAARTQAEKFTLGE 62 Query: 63 ADVSLSDVMIARNKSSVAFDATVQIRNKLVESYKDLMNMPV 103 V+L+DVM K+SV+ +Q+RNKLV +Y+++M+M V Sbjct: 63 PGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 489 bits (1261), Expect = e-173 Identities = 173/482 (35%), Positives = 267/482 (55%), Gaps = 18/482 (3%) Query: 1 MVQSKVLIVEDDEGLREALVDTLALAGYEWLEADCAEDALVKLKSNAVDIVVSDVQMAGM 60 M + +L+ +DD +R L L+ AGY+ A + + D+VV+DV M Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 GGLALLRNIRQNWPNMPVLLMTAYANIEDAVSAMKEGAIDYMAKPFAPEVLLNMVSR--- 117 LL I++ P++PVL+M+A A+ A ++GA DY+ KPF L+ ++ R Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 118 ------YAPIKSDDNGDAVVADEKSLR-LLALADKVARTDANVMILGPSGSGKEVMSRYI 170 +G +V +++ + + ++ +TD +MI G SG+GKE+++R + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 171 HNASNRKDGPFVAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEI 230 H+ R++GPFVAIN AAIP +++E+ LFG+EKGAFTGA G+FEQA+GGT+ LDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 231 SEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVSEGNFREDLYYRL 290 +M ++ Q +LLRVLQ+ E +G R I+ DVR++A +N+DLKQ +++G FREDLYYRL Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 291 NVFPISWPALCERKGDISPLAGHLAERHCSKMGLPVPKFSQVALDKLLQYPWPGNVRELD 350 NV P+ P L +R DI L H ++ K GL V +F Q AL+ + +PWPGNVREL+ Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 351 NVVQRALILSENGDIDAEHILLEGVDWQDASSLQSVVQNAEVLVPDVK---PVAQVESIN 407 N+V+R L I E I E S ++ + L + Q + Sbjct: 360 NLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASF 419 Query: 408 RVAAGGEGLGGELRDQ-EYAIILETLIECNGRRKEMAEKLGISPRTLRYKLAKMRDAGID 466 A GL + + EY +IL L G + + A+ LG++ TLR K+ ++ G+ Sbjct: 420 GDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL---GVS 476 Query: 467 IP 468 + Sbjct: 477 VY 478
>PF06580#Sensor histidine kinase Length = 349 Score = 32.1 bits (73), Expect = 0.003 Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 24/126 (19%) Query: 216 IDYFLEVEEEHTELLGNANAIASALSNLVMNAIQ--MSGKES--QIDVFFRPVNGELRIS 271 + + ++ + + + LV N I+ ++ +I + NG + + Sbjct: 240 LQFENQINPA----IMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLE 295 Query: 272 VQDSGPGVPKELQAKIMEPFFTTRSQGTGLGLAVVQMVCRA---HDGRLELISEQGDGAC 328 V+++G K + + TG GL V+ + + +++L +QG Sbjct: 296 VENTGSLALKNTK------------ESTGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVN 342 Query: 329 FTMCIP 334 + IP Sbjct: 343 AMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 510 bits (1316), Expect = 0.0 Identities = 183/497 (36%), Positives = 268/497 (53%), Gaps = 31/497 (6%) Query: 1 MQGLAKLLVIDDDAPSRLNISNILEFVGESCEAVSSDQLGDVDWSAVWSGFIVGNIS-AG 59 M G A +LV DDDA R ++ L G S+ +A +V ++ Sbjct: 1 MTG-ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 60 HAATAVMAHLNEAY-HIPLLVMGSFPLPVDDLPNFVGELEQ--------PLNYPQLSEAL 110 A ++ + +A +P+LVM + + E+ P + +L + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQN----TFMTAIKASEKGAYDYLPKPFDLTELIGII 115 Query: 111 SHCKDFLGRKGVNVVASARKNTLFRSLLGQSRGIQEVRHLIEQVSGTEANVLILGESGTG 170 R+ + ++ L+G+S +QE+ ++ ++ T+ ++I GESGTG Sbjct: 116 GRALAEPKRRPSKLEDDSQD---GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTG 172 Query: 171 KEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGAFTGALTSRKGRFELAEG 230 KE+VAR +H + RNGPFV IN AIP +L+ESELFGHEKGAFTGA T GRFE AEG Sbjct: 173 KELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEG 232 Query: 231 GTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTF 290 GT+FLDEIGDMPM Q +LLRVLQ+ + VGG T I+ +VR+VAAT++DL+ I+ G F Sbjct: 233 GTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLF 292 Query: 291 REDLFYRLNVFPIEMPALKARKQDIPLLLQELMTRLEAEGGQPICFTPRAINSLMEHNWP 350 REDL+YRLNV P+ +P L+ R +DIP L++ + + E EG F A+ + H WP Sbjct: 293 REDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWP 352 Query: 351 GNVRELANLVERMIILYPNSLVDVNHLPTKYRYSDIPEFQPEGNPFISVEEQERDVFQDI 410 GNVREL NLV R+ LYP ++ + + R S+IP+ E S ++ Sbjct: 353 GNVRELENLVRRLTALYPQDVITREIIENELR-SEIPDSPIEKAAARSGSLSISQAVEEN 411 Query: 411 FSENFSFEDQSDLDHNMNAPQALPPEGVNLKELLADMEVNMISQALEAQGGVVARAADML 470 + F+ + ALPP G+ +LA+ME +I AL A G +AAD+L Sbjct: 412 MRQYFA-----------SFGDALPPSGL-YDRVLAEMEYPLILAALTATRGNQIKAADLL 459 Query: 471 GMRRTTLVEKMRKYNLQ 487 G+ R TL +K+R+ + Sbjct: 460 GLNRNTLRKKIRELGVS 476
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.3 bits (78), Expect = 0.002 Identities = 52/319 (16%), Positives = 103/319 (32%), Gaps = 22/319 (6%) Query: 233 NTDADQPEQVDADGNPIPPEEQKAAE------NAQDGATDEPISAAGAAAAKAGQEAIDA 286 N + ++ Q N P +A N + DE A A + A Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVA 1041 Query: 287 ANKRAGMRPQDSIPGWTETASGTLLDSYRPPELELDEEAIAKAPDVPGWNNAASGTLTDS 346 N + + ++ + A+ T + E+ +EA + N A Sbjct: 1042 ENSK---QESKTVEKNEQDATETTAQNR-----EVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 347 YVTTKEAKQQLEQEKAEIEQKIADEKQELDQKVARGELTEEQAKQIHRAKLEPEERERLE 406 T E K+ EK E + ++ QE+ + + + KQ ++P+ E Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTS-----QVSPKQEQSETVQPQAEPARE 1148 Query: 407 KIDVAEAKIAEAQKAFEVYSGMTEVQAGQDSQVMLDGVAQLSSHNNVIEDAIEGVNLTLK 466 K ++Q + + + + + +++ N+V+E+ T Sbjct: 1149 NDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT- 1207 Query: 467 GKSELGKPPAEIGVEYDRQSVRSDIENFVSAYNSFYQSSKALASVDPTTGQKGPLAGDST 526 + + + R+SVRS N A S S +A D T+ + D+ Sbjct: 1208 -QPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRS-TVALCDLTSTNTNAVLSDAR 1265 Query: 527 VRNADARLKSVFSTSIEKA 545 + L + S + Sbjct: 1266 AKAQFVALNVGKAVSQHIS 1284
>FLAGELLIN#Flagellin signature. Length = 507 Score = 179 bits (454), Expect = 9e-54 Identities = 87/297 (29%), Positives = 136/297 (45%), Gaps = 3/297 (1%) Query: 2 AINVNTNVSAMTAQRYLNQAAEGQQKSMERLSSGYKINSAKDDAAGLQISNRLNAQSRGL 61 A +NTN ++ Q LN++ ++ERLSSG +INSAKDDAAG I+NR + +GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 DMAVKNANDGISIAQVAEGAMNESTNILQRMRDLSLQSANGSNSRSERVAIQEEVTALND 121 A +NANDGISIAQ EGA+NE N LQR+R+LS+Q+ NG+NS S+ +IQ+E+ + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELNRIAETTSFGGNKLLNGTYGTQSFQIGADSGEAVMLSMGNLRSDTSAMGGKSYSAEDG 181 E++R++ T F G K+L+ Q+GA+ GE + + + + + + G + + Sbjct: 121 EIDRVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 KDASWAVGDNTELKMTYTNKQGEEKELT-INAKQGDDIEQLATYINGQSEDVKASVGEDG 240 + T G K +N+ T + + Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 KLQVFAATQKVTGDVEFSGNLAGEIGFGDAKDVTVKD-IDVTTVAGSQEAVAIIDGA 296 + A +G + G K D D V + + DG Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Score = 122 bits (308), Expect = 5e-33 Identities = 75/269 (27%), Positives = 113/269 (42%), Gaps = 23/269 (8%) Query: 126 IAETTSFGGNKLLNGTYGTQSFQIGADSGEAVMLSMGNLRSDTSAMGGKSYSAEDGKDAS 185 T + ++ I + + T + K+ + +GK ++ Sbjct: 242 ENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVST 301 Query: 186 WAVGDNTELKMTYTNKQGEEKELTINAKQGDDIEQL-ATYINGQSEDVKASVGEDGKLQV 244 G K+T T ++A + + + +NGQ + E KL Sbjct: 302 TING----EKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSD 357 Query: 245 FAATQKVTGDVEFSGNLAGEIGFGDAKDVTV------------------KDIDVTTVAGS 286 A V G+ + + N A VT+ + + Sbjct: 358 LEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKST 417 Query: 287 QEAVAIIDGALKSVDSQRASLGAFQNRFNHAISNLDNINENVNASNSRIKDTDYAKETTA 346 +A ID AL VD+ R+SLGA QNRF+ AI+NL N N+N++ SRI+D DYA E + Sbjct: 418 ANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSN 477 Query: 347 MTKSQILQQASTSILAQAKQSPSAALSLL 375 M+K+QILQQA TS+LAQA Q P LSLL Sbjct: 478 MSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>FLAGELLIN#Flagellin signature. Length = 507 Score = 193 bits (492), Expect = 3e-59 Identities = 87/297 (29%), Positives = 142/297 (47%), Gaps = 2/297 (0%) Query: 2 AVNVNTNVSAMTAQRYLNNANSAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGL 61 A +NTN ++ Q LN + S+ +++ERLSSG +INSAKDDAAG I+NR +GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 DVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKAERVAIQEEVTALND 121 A RNANDGISIAQT EGA+NE N LQR+R+LS+Q+ NG+NS ++ +IQ+E+ + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELNRIAETTSFGGNKLLNGTYGTQSFQIGADNGEAVMLNLKDMRSDNQMMGGVSYQADNG 181 E++R++ T F G K+L+ Q+GA++GE + ++L+ + + + G + Sbjct: 121 EIDRVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 KDKNWNVEAGKNDLKISLTDSFGQEQEINISAKAGDDIEELATYINGQTDLVKASVDQDG 241 + KN + +++++ A T + Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 242 KLQVFAGNNKVEGDVEFSGGLSGELGLNDGKKVTV-DTIDVTSVGGAQESVAIIDAA 297 + + + +G + K DT D V ++ D Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Score = 133 bits (336), Expect = 5e-37 Identities = 85/377 (22%), Positives = 141/377 (37%), Gaps = 21/377 (5%) Query: 19 NNANSAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTA 78 N Q + ++ G L + ++ + + Sbjct: 132 NGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKN 191 Query: 79 EGAMNETTNILQRMRDLSLQSANGSNSKAERVAIQEEVTALNDELNRIAETTSFGGNKLL 138 + + R A +++ A V + V A N +L + + Sbjct: 192 VTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFK 251 Query: 139 NGTYGTQSFQIGADNGEAVMLNLKDMRSDNQMMGGVSYQADNGKDKNWNVEAGKNDLKIS 198 + + A G D + G D N V N K++ Sbjct: 252 TTKSTAGTAEAKAIAGAIKGGKEGDTFDYKG--VTFTIDTKTGNDGNGKVSTTINGEKVT 309 Query: 199 LTDSFGQEQEINISAKAGDDIEEL-ATYINGQTDLVKASVDQDGKLQVFAGNNKVEGDVE 257 LT + N+ A + + + +NGQ + ++ KL NN V+G+ + Sbjct: 310 LTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESK 369 Query: 258 FSGGLSGELGLNDGKKVTVD------------------TIDVTSVGGAQESVAIIDAALK 299 + + G KVT+ + +A ID+AL Sbjct: 370 ITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALS 429 Query: 300 YVDSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASS 359 VD+ R+ LGA QNRF+ AI+NL N N+N+++SRI+D D+A E + M+K+QIL QA + Sbjct: 430 KVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGT 489 Query: 360 SILAQAKQAPNSALSLL 376 S+LAQA Q P + LSLL Sbjct: 490 SVLAQANQVPQNVLSLL 506
>FLAGELLIN#Flagellin signature. Length = 507 Score = 206 bits (525), Expect = 4e-64 Identities = 92/297 (30%), Positives = 142/297 (47%), Gaps = 2/297 (0%) Query: 2 AITVNTNVAALVAQRHLTSATDMLNQSMERLSSGKRINSAKDDAAGLQISNRLQSQMRGL 61 A +NTN +L+ Q +L + L+ ++ERLSSG RINSAKDDAAG I+NR S ++GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 DVAVRNANDGISIMQTAEGAMNEVTNIMQRMRDLSLQSANGSNSKAERTALQEEVTALND 121 A RNANDGISI QT EGA+NE+ N +QR+R+LS+Q+ NG+NS ++ ++Q+E+ + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELNRIAETTSFGGRKLLNGSFGKSAFQIGAASGEAVQVELKSMRSDGIDMGGFSYVANGR 181 E++R++ T F G K+L+ Q+GA GE + ++L+ + + + GF+ Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQMK-IQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 ANSDWQVKDGANDLSMSFTNRFGETETIQINAKAGDDIEELTTYINGQTDKVTASVDEEG 241 A N + +N+ A T + Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 242 QLQLFMAGEETSGTLSFSGDL-ASELGLQLKGYDAVDNIDITSVGGAQQAVAVLDTA 297 + A + T S +G A + +KG D D V D Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Score = 127 bits (321), Expect = 6e-35 Identities = 59/213 (27%), Positives = 90/213 (42%), Gaps = 19/213 (8%) Query: 183 NSDWQVKDGANDLSMSFTNRFGETETIQINAKAGDDIEEL-TTYINGQTDKVTASVDEEG 241 + + +V N ++ T ++A + + T+ +NGQ + +E Sbjct: 294 DGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESA 353 Query: 242 QLQLFMAGEETSGTLSFSGDLASELGLQLKGYDAVD------------------NIDITS 283 +L A G + + A + + Sbjct: 354 KLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAA 413 Query: 284 VGGAQQAVAVLDTAMKYVDSHRAELGAYQNRFNHAINNLDNIHENLAASNSRIQDTDYAK 343 +A +D+A+ VD+ R+ LGA QNRF+ AI NL N NL ++ SRI+D DYA Sbjct: 414 KKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYAT 473 Query: 344 ETTQMVKQQILQQVSTSILAQAKQAPNLALTLL 376 E + M K QILQQ TS+LAQA Q P L+LL Sbjct: 474 EVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>PF03309#Bvg accessory factor Length = 271 Score = 28.2 bits (63), Expect = 0.037 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 25/118 (21%) Query: 158 ALIKDGAFAGGS-----YVMVQRFEHNLPAWNRLNVSAQEKVIGRTKLDSIELEDVPAAS 212 + G F GG+ V A R+ ++ VIG+ ++ ++ V Sbjct: 140 VVSAKGEFLGGAIAPGVQVSSDAAAARSAALRRVELTRPRSVIGKNTVECMQAGAVFG-- 197 Query: 213 HVGRVD-----IKEE-----GKGLKIVRHSLPYGTATGAHGLLFISYCNTIHNIKVML 260 G VD I+++ G + +V ATG L + T+ + L Sbjct: 198 FAGLVDGLVNRIRDDVDGFSGADVAVV--------ATGHTAPLVLPDLRTVEHYDRHL 247
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 26.6 bits (58), Expect = 0.026 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 3/84 (3%) Query: 12 SQETQTEAMKIAKSTQKPGQTKEQTKLIAQGIEKGIAQYKKQQKERNRQADKAKKKQQRE 71 ++ETQT K + +K + K +T+ + + + K+ + + + + RE Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKV---TSQVSPKQEQSETVQPQAEPARE 1148 Query: 72 KQRQVDDVVEQESANIEAPTSKPA 95 V+ Q N A T +PA Sbjct: 1149 NDPTVNIKEPQSQTNTTADTEQPA 1172 Score = 26.2 bits (57), Expect = 0.039 Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 5/88 (5%) Query: 11 PSQETQTEAMKIAKSTQKPGQTKEQTKLIAQGIEKGIAQ--YKKQQKERNRQADKAKKKQ 68 + + T+ ++A+S + +T+ +EK ++ +E + + KQ Sbjct: 1074 SNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQ 1133 Query: 69 QREKQRQVDDVVEQESA---NIEAPTSK 93 ++ + Q +E+ NI+ P S+ Sbjct: 1134 EQSETVQPQAEPARENDPTVNIKEPQSQ 1161
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 29.1 bits (64), Expect = 0.029 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Query: 17 NASTEGIANNELEKTSNRTKTAAREE-FDASSKSLDATQLYLGEIGFSPLLTAEEEVLYA 75 ++S GIANN + S T AR+E F S L+ + + + + L TAEE Sbjct: 244 SSSVLGIANNYTDSKSAETLENARKEAFAQSKDVLNMAKAHSNSVARTTLETAEEHANSV 303 Query: 76 RRAL--RGDEAARKRMIES 92 R +E A K+ E+ Sbjct: 304 ARTTLETAEEHANKKSAEA 322
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 3e-04 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 12/65 (18%) Query: 222 IVSTAAGTVVYSGNALRGYGNLIIVKHNDNYLSAYAHNDRLLVSEGQSVKSGQKIATMGS 281 IV+TA G + +SG + +K +N + ++V EG+SV+ G + + + Sbjct: 82 IVATANGKLTHSGRSK-------EIKPIEN-----SIVKEIIVKEGESVRKGDVLLKLTA 129 Query: 282 SGSKS 286 G+++ Sbjct: 130 LGAEA 134
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.022 Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%) Query: 89 QTAVLAQIVDHVYS--VERIKSLQWDAKRRLKQLDI 122 + A+ + + +K+ QWD RL++ + Sbjct: 520 EQAINVAADMNRVHPFRDWVKAQQWDEVPRLEKWLV 555
>MPTASEINHBTR#Metalloprotease inhibitor signature. Length = 122 Score = 29.2 bits (65), Expect = 0.007 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 181 QQLTQALADALEQGATIT-DEASALEWLGEKPALVQGNANNIKITQPEDLALAEFYLSRE 239 + A EQ + D A A +WLG+KP + I + E + +L+R+ Sbjct: 44 ATGSGVCAGPAEQANALAGDVACAEQWLGDKPVSWSPTPDGIWLMNAEGTGIT--HLNRQ 101 Query: 240 R 240 + Sbjct: 102 K 102
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 567 bits (1463), Expect = 0.0 Identities = 318/347 (91%), Positives = 334/347 (96%) Query: 1 MFKKLRGMFSNDLSIDLGTANTLIYVKGQGIVLDEPSVVAIRQDRVGSAKSVAAVGHAAK 60 M KK RGMFSNDLSIDLGTANTLIYVKGQGIVL+EPSVVAIRQDR GS KSVAAVGH AK Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAK 60 Query: 61 QMLGRTPGNISAIRPMKDGVIADFYVTEKMLQHFIKQVHDNSILKPSPRVLVCVPCGSTQ 120 QMLGRTPGNI+AIRPMKDGVIADF+VTEKMLQHFIKQVH NS ++PSPRVLVCVP G+TQ Sbjct: 61 QMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQ 120 Query: 121 VERRAIRESALGAGAREVYLIDEPMAAAIGAGLRVSEPTGSMVVDIGGGTTEVAVISLNG 180 VERRAIRESA GAGAREV+LI+EPMAAAIGAGL VSE TGSMVVDIGGGTTEVAVISLNG Sbjct: 121 VERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNG 180 Query: 181 VVYSSSVRIGGDRFDEAVINYVRRNYGSLIGEATAEKIKHEIGSAYPGDEVQEIEVRGRN 240 VVYSSSVRIGGDRFDEA+INYVRRNYGSLIGEATAE+IKHEIGSAYPGDEV+EIEVRGRN Sbjct: 181 VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRN 240 Query: 241 LAEGVPRSFSLNSNEILEALQEPLSGIVSAVMVALEQCPPELASDISENGMVLTGGGALL 300 LAEGVPR F+LNSNEILEALQEPL+GIVSAVMVALEQCPPELASDISE GMVLTGGGALL Sbjct: 241 LAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALL 300 Query: 301 KDLDRLLMEETGIPVVIAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347 ++LDRLLMEETGIPVV+AEDPLTCVARGGGKALEMIDMHGGDLFSEE Sbjct: 301 RNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 28.3 bits (63), Expect = 0.006 Identities = 9/27 (33%), Positives = 18/27 (66%) Query: 1 MFRKNAQQGNVLIVVLFVIIVMGYLAA 27 M + Q+G L+ ++ VI+++G LA+ Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLAS 27
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 32.2 bits (73), Expect = 8e-04 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%) Query: 2 KTRGFTLMEMIVTIVIGSFIMLGI-AGYVQLGMKGYADTIDRQRMQTQAQ 50 K RGFTL+E++V IVI +G+ A V + G + D+Q+ + Sbjct: 6 KQRGFTLLEIMVVIVI-----IGVLASLVVPNLMGNKEKADKQKAVSDIV 50
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 27.9 bits (62), Expect = 0.016 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Query: 3 MRKQLGMTLAEMIIAIVLMGIAMVAFTSFLVPQI 36 KQ G TL E+++ IV++G+ S +VP + Sbjct: 4 TDKQRGFTLLEIMVVIVIIGV----LASLVVPNL 33
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 35.2 bits (81), Expect = 6e-06 Identities = 11/32 (34%), Positives = 20/32 (62%) Query: 1 MRKSSGLSAIEFVVVLVILGVVGYVVLPRFIS 32 K G + +E +VV+VI+GV+ +V+P + Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMG 35
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 53.4 bits (128), Expect = 6e-12 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Query: 1 MKRQGGFTLIELVVVIVILGILAVTAAPRFLNLQNDARA----SSLQGLKGAIE 50 +Q GFTL+E++VVIVI+G+LA P + + A S + L+ A++ Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALD 57
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 280 bits (719), Expect = 2e-93 Identities = 114/399 (28%), Positives = 197/399 (49%), Gaps = 2/399 (0%) Query: 1 MPTFRYQGRTLDGSSTSGKVDAVNSEAAAEALMNKGIIPLNLRLEKEAVKSKVSLSKLLV 60 M + YQ G G +A ++ A + L +G++PL++ + + S L Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 61 PAIPLEV--IILFSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEEVVAELSNGRGL 118 I L + L +RQL +L A +PL ++ + + E L + + V +++ G L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 119 SSAMQPHTKVFSPLFVSMINVGENTGRLDQALLQLANYYEQELETRKRIKAAMRYPTFVI 178 + AM+ F L+ +M+ GE +G LD L +LA+Y EQ + R RI+ AM YP + Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 179 VFITIAMFILNILVIPEFASMFTRFGVELPLPTRILIATSSFFVNYWGLLIAAIIGAFVI 238 V + IL +V+P+ F LPL TR+L+ S + ++ A++ F+ Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 239 FRSWVATADGREKFDKLRLRLPIVGDIVNRAQLSRFARTFSLMLKSGVPLNQSLALAGEA 298 FR + R F + L LP++G I +R+ART S++ S VPL Q++ ++G+ Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 299 LGNKFLENRILEMKAAIEAGSTISVTAINSKIFTPLVIQMIAVGEETGRIDELLLEVSDF 358 + N + +R+ A+ G ++ + +F P++ MIA GE +G +D +L +D Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 359 YDREVDYDLKTLTARIEPLLLVIVAGMVMVLALGIFLPM 397 DRE + EPLL+V +A +V+ + L I P+ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPI 399 Score = 69.5 bits (170), Expect = 4e-15 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 1/126 (0%) Query: 71 FSRQLFSLTKAGVPLLRSMRGLLQNCENKQLKEALEEVVAELSNGRGLSSAMQPHTKVFS 130 ++R L L + VPLL++MR N + L + G L A++ T +F Sbjct: 276 YARTLSILNASAVPLLQAMRISGDVMSNDYARHRLSLATDAVREGVSLHKALE-QTALFP 334 Query: 131 PLFVSMINVGENTGRLDQALLQLANYYEQELETRKRIKAAMRYPTFVIVFITIAMFILNI 190 P+ MI GE +G LD L + A+ ++E ++ + + P V+ + +FI+ Sbjct: 335 PMMRHMIASGERSGELDSMLERAADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLA 394 Query: 191 LVIPEF 196 ++ P Sbjct: 395 ILQPIL 400
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 175 bits (445), Expect = 1e-49 Identities = 76/314 (24%), Positives = 138/314 (43%), Gaps = 27/314 (8%) Query: 220 QQAVANLIGSGKGQSVVVTPQAGVITVRAFPDEIREVREFLGVSQERMQRQVILEAKILE 279 +QA + K + Q + V A PD + ++ + + + QV++EA I E Sbjct: 297 KQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIA-QLDIRRPQVLVEAIIAE 355 Query: 280 VTLSDGYQQGINWSNMSASI---GNSGSILVDRNPAKLPLDAIGTLLGGQTN-------- 328 V +DG GI W+N +A + NSG + + GT+ + Sbjct: 356 VQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGI 415 Query: 329 -VTFSDGNFEAVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGE 387 F GN+ +++ +++ ++L++P I +N ++ VG + +T S +G+ Sbjct: 416 AAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLT--GSQTTSGD 473 Query: 388 NSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQLNLGGDFQNIQL 447 N E + GI L V PQI+ +V L + V V + + Sbjct: 474 NIFNTVERKTV----GIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLG------ 523 Query: 448 PLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNVTQ 507 A + R ++ + G+ VV+GGL+ + + KVP LGD+P +G LFR+ + Sbjct: 524 --ATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVS 581 Query: 508 KTELVILLKPTVVG 521 K L++ ++PTV+ Sbjct: 582 KRNLMLFIRPTVIR 595 Score = 38.0 bits (88), Expect = 8e-05 Identities = 36/196 (18%), Positives = 67/196 (34%), Gaps = 48/196 (24%) Query: 71 FRVQANAVEARSFFASLVKGTEYSVAIHPAVQGNITVDLSDVT----LDEVLNVVQNMYG 126 F + + F ++ K +V I P+V+G ITV D+ + V ++YG Sbjct: 30 FSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVLDVYG 89 Query: 127 YDVVKSGK-VIQVYPA-GMRTVTIPVDYLQFKRSGRSLTSIVTGSVTSAGTSNSGGGSDD 184 + V+ V++V + +T +PV Sbjct: 90 FAVINMNNGVLKVVRSKDAKTAAVPV---------------------------------- 115 Query: 185 SDSSDSNNNNGDGSTTSTGGTRIETITESDFWPMLQQAVANLIGSGKGQSVVVTPQAGVI 244 +SD+ GD T + + D P+L+Q L + SVV + V+ Sbjct: 116 --ASDAAPGIGDEVVTRV--VPLTNVAARDLAPLLRQ----LNDNAGVGSVVHYEPSNVL 167 Query: 245 TVRAFPDEIREVREFL 260 + I+ + + Sbjct: 168 LMTGRAAVIKRLLTIV 183