PredictBias

identification of genomic and pathogenicity islands in prokaryotic genome
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A) Input parameters
Genome2265.gbkThreshold dinucleotide bias2
Threshold codon bias4Threshold %GC bias3
E-value (RPSBlast)0.05Genome (non-pathogenic)
 
B) Compare a potential GI or PAI in related non-pathogenic sp. (phylogenetic tree)
Potential GI or PAI start    end  
Select Organism     
 
C) Potential GIs and PAIs in NC_004741 (download)
S.NoStartEndBiasVirulenceInsertion elementsPrediction
1S0055S0061Y        Y        NPathogenicity Island (biased-composition)
2S0099S0114Y        Y        NPathogenicity Island (biased-composition)
3S0202S0246Y        Y        YPathogenicity Island (biased-composition)
4S0270S0298Y        Y        YPathogenicity Island (biased-composition)
5S0316S0339Y        NYGenomic Island
6S0367S0387Y        Y        YPathogenicity Island (biased-composition)
7S0405S0422Y        Y        YPathogenicity Island (biased-composition)
8S0461S0482Y        Y        YPathogenicity Island (biased-composition)
9S0493S0522Y        Y        YPathogenicity Island (biased-composition)
10S0561S0571Y        Y        YPathogenicity Island (biased-composition)
11S0700S0765Y        Y        YPathogenicity Island (biased-composition)
12S0857S4814Y        Y        NPathogenicity Island (biased-composition)
13S0898S0959Y        Y        YPathogenicity Island (biased-composition)
14S1002S1008Y        Y        YPathogenicity Island (biased-composition)
15S1018S1023Y        Y        NPathogenicity Island (biased-composition)
16S1066S1080Y        NYGenomic Island
17S1094S1140Y        NYGenomic Island
18S1237S1244Y        Y        YPathogenicity Island (biased-composition)
19S1333S1344Y        Y        YPathogenicity Island (biased-composition)
20S1384S1406Y        Y        YPathogenicity Island (biased-composition)
21S1421S1427Y        NYGenomic Island
22S1459S1499Y        NYGenomic Island
23S1554S1567Y        Y        YPathogenicity Island (biased-composition)
24S1591S1605Y        Y        NPathogenicity Island (biased-composition)
25S1650S1669Y        Y        YPathogenicity Island (biased-composition)
26S1687S1694Y        Y        NPathogenicity Island (biased-composition)
27S1719S1739Y        Y        YPathogenicity Island (biased-composition)
28S1850S1859Y        Y        YPathogenicity Island (biased-composition)
29S1882S1888Y        Y        NPathogenicity Island (biased-composition)
30S1904S1911Y        NYGenomic Island
31S1939S1954Y        NYGenomic Island
32S1964S1992Y        Y        YPathogenicity Island (biased-composition)
33S2067S2184Y        Y        YPathogenicity Island (biased-composition)
34S2202S2225Y        NNGenomic Island
35S2256S2340Y        Y        YPathogenicity Island (biased-composition)
36S2407S2418Y        Y        NPathogenicity Island (biased-composition)
37S2567S2494Y        Y        YPathogenicity Island (biased-composition)
38S2555S2577Y        Y        YPathogenicity Island (biased-composition)
39S2632S2649Y        Y        NPathogenicity Island (biased-composition)
40S2697S2720Y        Y        YPathogenicity Island (biased-composition)
41S2733S2747Y        Y        NPathogenicity Island (biased-composition)
42S2779S2790Y        Y        YPathogenicity Island (biased-composition)
43S2848S2885Y        NYGenomic Island
44S2921S2932Y        Y        NPathogenicity Island (biased-composition)
45S3052S3060Y        NYGenomic Island
46S3148S3155Y        Y        YPathogenicity Island (biased-composition)
47S3165S3209Y        Y        YPathogenicity Island (biased-composition)
48S3365S3370Y        Y        NPathogenicity Island (biased-composition)
49S3412S3426Y        Y        NPathogenicity Island (biased-composition)
50S3719S3732Y        NNGenomic Island
51S3795S3816Y        Y        YPathogenicity Island (biased-composition)
52S3856S3865Y        Y        YPathogenicity Island (biased-composition)
53S3948S3960Y        Y        YPathogenicity Island (biased-composition)
54S3973S3982Y        Y        NPathogenicity Island (biased-composition)
55S4045S4831Y        Y        YPathogenicity Island (biased-composition)
56S4097S4105Y        Y        YPathogenicity Island (biased-composition)
57S4155S4177Y        Y        YPathogenicity Island (biased-composition)
58S4217S4235Y        NYGenomic Island
59S4246S4288Y        Y        YPathogenicity Island (biased-composition)
60S4455S4477Y        Y        YPathogenicity Island (biased-composition)
61S4548S4554Y        NYGenomic Island
62S4594S4602Y        Y        NPathogenicity Island (biased-composition)
63S4624S4633Y        Y        YPathogenicity Island (biased-composition)
64S0338S0345N        Y        NPathogenicity Island (unbiased-composition)
65S0384S0391N        Y        NPathogenicity Island (unbiased-composition)
66S0409S0422N        Y        NPathogenicity Island (unbiased-composition)
67S0511S0516N        Y        NPathogenicity Island (unbiased-composition)
68S0783S0788N        Y        NPathogenicity Island (unbiased-composition)
69S0838S0843N        Y        NPathogenicity Island (unbiased-composition)
70S0860S0865N        Y        NPathogenicity Island (unbiased-composition)
71S1160S1168N        Y        NPathogenicity Island (unbiased-composition)
72S1278S1293N        Y        YPathogenicity Island (unbiased-composition)
73S1302S1310N        Y        NPathogenicity Island (unbiased-composition)
74S2022S2030N        Y        NPathogenicity Island (unbiased-composition)
75S2062S2089N        Y        NPathogenicity Island (unbiased-composition)
76S2100S2108N        Y        YPathogenicity Island (unbiased-composition)
77S2266S2277N        Y        NPathogenicity Island (unbiased-composition)
78S2571S2574N        Y        NPathogenicity Island (unbiased-composition)
79S2894S2901N        Y        NPathogenicity Island (unbiased-composition)
80S3403S3410N        Y        NPathogenicity Island (unbiased-composition)
81S3490S3496N        Y        NPathogenicity Island (unbiased-composition)
82S3554S3561N        Y        NPathogenicity Island (unbiased-composition)
83S3613S3620N        Y        NPathogenicity Island (unbiased-composition)
84S3631S3637N        Y        YPathogenicity Island (unbiased-composition)
85S3645S3663N        Y        YPathogenicity Island (unbiased-composition)
86S3805S3810N        Y        NPathogenicity Island (unbiased-composition)
87S3969S3980N        Y        NPathogenicity Island (unbiased-composition)
88S4183S4188N        Y        NPathogenicity Island (unbiased-composition)
89S4260S4265N        Y        NPathogenicity Island (unbiased-composition)
90S4292S4299N        Y        NPathogenicity Island (unbiased-composition)
91S4389S4398N        Y        NPathogenicity Island (unbiased-composition)
92S4698S4704N        Y        NPathogenicity Island (unbiased-composition)

 
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