>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.7 bits (74), Expect = 0.001 Identities = 32/195 (16%), Positives = 67/195 (34%), Gaps = 3/195 (1%) Query: 15 REELEARISELEDENENLTDENTRLLASKEWPTKENAELLREKDNLTKANAELKKENDKL 74 + +LE + + + + + L A K AEL + + + + L Sbjct: 157 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 216 Query: 75 NHQIITLTKEQDSLKYERVQLKDAHGSLKELCANSEKDNQRLADKLKKLESAQKNLANSN 134 + L + L+ + + E + L + +LE A + N + Sbjct: 217 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 276 Query: 135 NQLLQAREKIAKEKTELERKMARLKSLEATDKSELDLQNRRF---KSAIEDLKRQNRKLE 191 + + EK LE + A L+ + R + A + L+ +++KLE Sbjct: 277 TADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLE 336 Query: 192 EENIALKERVDGLKE 206 E+N + L+ Sbjct: 337 EQNKISEASRQSLRR 351 Score = 32.3 bits (73), Expect = 0.001 Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 4/192 (2%) Query: 16 EELEARISELEDENENLTDENTRLLASKEWPTKENAELLREKDNLTKANAELKKENDKLN 75 + L+ EL +E N ++ + S + EL K +L KA + + Sbjct: 81 KALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADS 140 Query: 76 HQIITLTKEQDSLKYERVQLKDAHGSLKELCANSEKDNQRLADKLKKLESAQKNLANSNN 135 +I TL E+ +L + L+ A + L + LE+ Q L Sbjct: 141 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAEL----E 196 Query: 136 QLLQAREKIAKEKTELERKMARLKSLEATDKSELDLQNRRFKSAIEDLKRQNRKLEEENI 195 + L+ + + + + K+ A K++L+ + + + LE E Sbjct: 197 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 256 Query: 196 ALKERVDGLKEQ 207 AL+ R L++ Sbjct: 257 ALEARQAELEKA 268 Score = 30.8 bits (69), Expect = 0.003 Identities = 30/198 (15%), Positives = 60/198 (30%), Gaps = 10/198 (5%) Query: 13 QVREELEARISELEDENENLTDENTRLLASKEWPTKENAELLREKDNLTKANAELKKEND 72 + E + + + L E L A A+L + + + + Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAA-------RKADLEKALEGAMNFSTADSAKIK 179 Query: 73 KLNHQIITLTKEQDSLKYERVQLKDAHGSLKELCANSEKDNQRLADKLKKLESAQKNLAN 132 L + L Q L+ + + E + LA + LE A + N Sbjct: 180 TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239 Query: 133 SNNQLLQAREKIAKEKTELERKMARLKSLEATDKSELDLQNRRFKSA---IEDLKRQNRK 189 + + + EK LE + A L+ + + + K+ L+ + Sbjct: 240 FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299 Query: 190 LEEENIALKERVDGLKEQ 207 LE ++ L L+ Sbjct: 300 LEHQSQVLNANRQSLRRD 317
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1045 bits (2704), Expect = 0.0 Identities = 354/569 (62%), Positives = 443/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNTSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGN S +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPATKVSLAQLFSIF 569 ETY V DG+ +T +PAT + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 28.0 bits (62), Expect = 0.025 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 13/89 (14%) Query: 47 TKRFGFRTYGYYSYNHANLSFVG-----------SKLGIMDGASQVNNFTYGVGFDALYN 95 TK F ++ +++N A L G S L DG+ V +T +G DA YN Sbjct: 212 TKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDA-YN 270 Query: 96 FYESKERYNT-AGLFLGFGLGGDSFIVQG 123 S+ R + + G+ D +G Sbjct: 271 QGLSERRAQSVVDYLISKGIPADKISARG 299
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 31.5 bits (71), Expect = 0.011 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 503 MNNTDTGNTDTGNTDTGNTDTGNTDTGNADDMSNMNNGNDDMGNTNDDMSNSNDM 557 + N T N D+ +T NT+T T+ + S + + G DDM NSNDM Sbjct: 26 VGNLVTANADSNKQNTANTETTTTNEQPKPESSELT--TEKAGQKMDDMLNSNDM 78
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.9 bits (77), Expect = 0.003 Identities = 31/186 (16%), Positives = 59/186 (31%), Gaps = 35/186 (18%) Query: 8 EKAPKRAKQEAKTEATQENKIKE-----------------------------SKIKEAKT 38 E + +KQE+KT E E S+ KE +T Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 39 KESKIKETKTKESKIK---ETKAKEPVPVKKLSFNEALEELF---ANSLSDCVSYESIIQ 92 E+K T KE K K E + P ++S + E A + +I + Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 93 ISAKVPTLAQVKKIKELCQKYQKKLVSSSEYAKKLNAIDKIKKTEEKQKVLDEELEDGYD 152 ++ T A ++ + ++ V+ S N++ + + + + Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 153 FLKEKD 158 K + Sbjct: 1218 KPKNRH 1223
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 31.8 bits (72), Expect = 0.001 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 133 FNWLYKGSDFGALHEQFGDMYDGYIKYLISMVRISQKEKARKLDAVTLKKMEDQAEKD-- 190 F+W KG F LHE+F ++YD + + ++ E+ + + +++ E Sbjct: 34 FHWYVKGPHFFTLHEKFEELYDHAAETVDTIA-----ERLLAIGGQPVATVKEYTEHASI 88 Query: 191 TKAAFQKRSSGELESLTDSPEFISSS-KKVQNTSNSDLDSTTN 232 T + +S +++L + + ISS K V + + D+ T Sbjct: 89 TDGGNETSASEMVQALVNDYKQISSESKFVIGLAEENQDNATA 131
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.8 bits (147), Expect = 5e-13 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKPLYDSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSNLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.7 bits (111), Expect = 9e-08 Identities = 57/271 (21%), Positives = 105/271 (38%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLICYFD 87 L+ S +T H L + LM + L LS + +S A+ + I Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKENKKALVGGFIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + +++A GF+ + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLIGLKN-HSLKKKSVKKEESAFKIPFHL----- 200 + ++ + + F+ L H +++ +++E F Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLVSCALNAIGFLPHTLFWVDYLIRHLNISPTTAGTSWALFG-FGATLGSLISGP 256 L+ V + +G +P L WV + + TT G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILILKSIACFLPIFFHQI 287 +A +LG + A + +I L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 69.7 bits (170), Expect = 1e-14 Identities = 46/279 (16%), Positives = 85/279 (30%), Gaps = 4/279 (1%) Query: 140 ELENLGDLEALVQEEPNNEEQLLPTLNAQEEKEEVKEETKETPQEEEEKPKDDEVQEGET 199 E+E N Q +E + + P P + E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 200 QKNEEVSKELETQEELEIPKEETQEQVKEQEPIKEETQENKEEKQEKTQDSPSTQELEAM 259 K E + E Q+ E + + + + +K TQ N+ + T E + Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 260 QELVKEIQENSNGQEDKKETQESAETPQEKETQELETPQNVEIPQESAKTPQETEKQELE 319 + KE + ++ ++ + +++ ++E E PQ + + + + Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 320 TPQEETQESAETPQETEKQELEIPQNVETPQEKETPQETPQETSQETSQESAEKTQKLET 379 T + Q + ET E+ E E P+ T T+Q T + K Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK--- 1220 Query: 380 QEDHYESIADIPEPVMAQAMGEELPFLNESVAKTSNNEN 418 H S+ +P V TS N N Sbjct: 1221 -NRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTN 1258 Score = 64.3 bits (156), Expect = 7e-13 Identities = 44/240 (18%), Positives = 84/240 (35%), Gaps = 9/240 (3%) Query: 215 LEIPKEETQEQVKEQEPIKEETQENKEEKQEKTQDSPSTQELEAMQELVKEIQENSNGQE 274 ++ T ++ P E E P+ E V E + + Sbjct: 992 VDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTV 1051 Query: 275 DKKETQESAETPQEKETQELETPQNVEIPQESAKTPQETEKQELETPQEETQESAETPQE 334 +K E + T Q +E + E Q E + + +ETQ + +E Sbjct: 1052 EKNEQDATETTAQNREVAK-------EAKSNVKANTQTNEVAQSGSETKETQTTET--KE 1102 Query: 335 TEKQELEIPQNVETPQEKETPQETPQETSQETSQESAEKTQKLETQEDHYESIADIPEPV 394 T E E VET + +E P+ T Q + ++ E+ + + + D +I + Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQT 1162 Query: 395 MAQAMGEELPFLNESVAKTSNNENDTETPKESVIKTPQEKEESIETPKESDKTSSPLELR 454 A E+ S + E+ T SV++ P+ + P + ++S+ + R Sbjct: 1163 NTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNR 1222
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 190 bits (485), Expect = 5e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSTSGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.015 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 15/67 (22%) Query: 102 RGETILKALERIAFE---EFQLNSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKEKE 158 R + + AL A E E L LE + N A FY K+H+ + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA----------- 150 Query: 159 FIDVFLY 165 +D LY Sbjct: 151 -VDTMLY 156
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 27.1 bits (60), Expect = 0.039 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 32 FVIVAWLFRF--KSIAFSILITLLVILVDIWVYSDVRQFLL-DTASSPILLLVALLIKW 87 V VA ++A +L +LV L I D+ + LL D + P+L LL Sbjct: 121 SVAVAMTLAPGWGTLAALLLTWVLVALTFI----DLDKMLLPDQLTLPLLWG-GLLFNL 174
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 198 bits (504), Expect = 1e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FSAMDV-GDSVVDPTNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>SECA#SecA protein signature. Length = 901 Score = 30.2 bits (68), Expect = 0.027 Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 24/134 (17%) Query: 343 RAKIMKSNCNKALKVVEQLQKAIEITIEKRIDPMIKEAQEHQQEARYNLDRSTEKFILNL 402 R +++ + + + + + + TI+ I P + +E +R F L+L Sbjct: 663 RNELLDVS-DVSETINSIREDVFKATIDAYIPP--QSLEEMWDIPGLQ-ERLKNDFDLDL 718 Query: 403 TNSAFYEIDQ--FKSDLREKMYAHINKNIEDEE-------CKEIFKNELIQGI------- 446 + + + + + LRE++ A + + +E + K ++Q + Sbjct: 719 PIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEH 778 Query: 447 ----ETLHEGIKWR 456 + L +GI R Sbjct: 779 LAAMDYLRQGIHLR 792
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 28.2 bits (62), Expect = 0.011 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 92 EQNKNAKESMRMAKEQFE-LEKQRYNAREQERLKNREAIDNI 132 E+ K A E + AKEQ + +K + R++ER KNR ++N+ Sbjct: 142 EEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENL 183
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 28.7 bits (64), Expect = 0.031 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 4/115 (3%) Query: 26 IYQISNVLNQLDLLKNFSKHDLEIVGKIQRLKSALKN---YETSEQELKAKIDALKQRLE 82 IY + L+ ++L +S++ + + K+ +N Y +LK +A ++L Sbjct: 346 IYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLL 405 Query: 83 AKKQELEARLNMELQSARVSEIQKLNDAGNEL-KTNLINKLKEAKDNLAQALNPQ 136 ++EL ++ ++ + EL +T I K K ++ P Sbjct: 406 QNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPM 460
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.6 bits (64), Expect = 0.028 Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 18/173 (10%) Query: 8 RNFILFKDALQKQNFNNKDLNTTSMQAALQSEQLALSEEAQGGQSEQVRAKMQIDFLVMQ 67 + D QN + +++ +L EQ + + + Q Q E K + + L + Sbjct: 165 LPELKLPDEPYFQNVSEEEV---LRLTSLIKEQFS-TWQNQKYQKELNLDKKRAERLTVL 220 Query: 68 ANLQNEKAETLNKLIQCQ-AMLKSLKDNAMINRANALVSLLQ-VQANAANGITASNFDIT 125 A + + + ++ + + SL I + L + V+A + S Sbjct: 221 ARINRYENLS--RVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQ---- 274 Query: 126 FKLISQIGSEYNQIKFSTGGIISVQEKEQTNELKTI---LNNLSKELEKLNEQ 175 + QI SE K + + + E ++L+ + L+ EL K E+ Sbjct: 275 ---LEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEER 324
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 395 bits (1016), Expect = e-137 Identities = 128/384 (33%), Positives = 198/384 (51%), Gaps = 9/384 (2%) Query: 2 KIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALVKL-DESFDLVITDINMPHMDGL 60 I + +DD +R L + ++ N + DLV+TD+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALS-RAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 61 EFLRLLEGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESIYRTKKVLE 117 + L ++ +V++ T AI + G D+ KPF E I + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT---ELIGIIGRALA 120 Query: 118 FQKKHPLEKPLKKPHKHSFLAASKALEESKRQALKVASTDANVMLLGESGVGKEVFAHFI 177 K+ P + + S A++E R ++ TD +M+ GESG GKE+ A + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 178 HQHSQRSKHPFIAINMSAIPEHLLESELFGYQKGAFTDATAPKMGLFESAHKGTIFLDEI 237 H + +R PF+AINM+AIP L+ESELFG++KGAFT A G FE A GT+FLDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 238 AEMPLQLQSKLLRVVQEKEITRLGDNKSVKIDVRFISATNANMKEKIAAKEFREDLFFRL 297 +MP+ Q++LLRV+Q+ E T +G ++ DVR ++ATN ++K+ I FREDL++RL Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 298 QIVPIVIAPLRERIEEILPIAEIKLKEVCDAYHLGPKSFSKNAAKRLLEYSWHGNVRELL 357 +VP+ + PLR+R E+I + +++ L K F + A + + + W GNVREL Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 358 GVVERAAILSEGAEIQEKDLFLER 381 +V R L I + + E Sbjct: 360 NLVRRLTALYPQDVITREIIENEL 383
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 124 bits (313), Expect = 7e-37 Identities = 78/250 (31%), Positives = 112/250 (44%), Gaps = 11/250 (4%) Query: 5 GKNVLITGASKGIGAEIARTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDA 64 GK ITGA++GIG +ARTLAS G + N E + + + L+ + A D Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 65 ASESGFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCRE 124 + E I + G + LVN AGV+R L + E++ N T F R Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 125 ALKVMSKSRFGSVVNIASIIGERGNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVT 184 K M R GS+V + S Y++SK + +K E A NIR N V+ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 185 PGFIETDMNANL--KDELKADYVK--------NIPLNRLGSAKEVAEVVAFLLSDHSSYI 234 PG ETDM +L + +K IPL +L ++A+ V FL+S + +I Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 235 TGETLKVNGG 244 T L V+GG Sbjct: 247 TMHNLCVDGG 256
>PF01206#SirA family protein Length = 76 Score = 26.6 bits (59), Expect = 0.004 Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 19 SGKEIEVLSTKPEMRIDISSFC 40 +G+ + V++T P D SF Sbjct: 31 AGEVLYVMATDPGSVKDFESFS 52
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 1710 bits (4430), Expect = 0.0 Identities = 921/1191 (77%), Positives = 1018/1191 (85%), Gaps = 59/1191 (4%) Query: 1 MTNETIDQTTTPDQTPNQTDFVPQRFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNR 60 MTNETIDQ Q + F PQ+FINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNR Sbjct: 1 MTNETIDQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR 55 Query: 61 QAFEKISQLREEYANKAIKNPAKKNQYFSDFINKSNDLINKDNLIDVDSSVESFKKFGDQ 120 QAFE ISQLREEY+NKAIKNP KKNQYFSDFINKSNDLINKDNLIDV+SS +SF+KFGDQ Sbjct: 56 QAFEGISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQ 115 Query: 121 RYQIFTSWVSLQKDPSEINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ 180 RY+IFTSWVS Q DPS+INT+ IRNFMENIIQPPI DDKEKAEFL+SAKQSFAGIIIGNQ Sbjct: 116 RYRIFTSWVSHQNDPSKINTRSIRNFMENIIQPPILDDKEKAEFLKSAKQSFAGIIIGNQ 175 Query: 181 IRSDQKFMGVFDESLKERQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLHQEPRPD 240 IR+DQKFMGVFDESLKERQEAEKN EP GGDWLDIFLSF+F+KKQSSD+KE ++QEP P Sbjct: 176 IRTDQKFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPH 235 Query: 241 FEQNLATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADKNPNYKFNQLLIH 300 + ++ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVAD +PNYKFNQLLIH Sbjct: 236 VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH 295 Query: 301 NNALSSVLMGGHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGSNVATLINAHLNN 360 NNALSSVLMG H+ IEPEKVSLLYG NGGP ARHDWNATVGYK+QQG+NVAT+IN H+ N Sbjct: 296 NNALSSVLMGSHNGIEPEKVSLLYGGNGGPGARHDWNATVGYKDQQGNNVATIINVHMKN 355 Query: 361 GSGLIIAGNENGIKNPSFYLYKEDQLTGLKQAMSQEEIQNKVDFMEFLAKNNAKLDNLSE 420 GSGL+IAG E GI NPSFYLYKEDQLTG ++A+SQEEIQNK+DFMEFLA+NNAKLDNLSE Sbjct: 356 GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAKLDNLSE 415 Query: 421 KEKEKFQTEIGNFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGK 480 KEKEKF+TEI +FQKD KAYLDALGND IAFVSKKD KH AL+TEFGNG++SYTLKDYGK Sbjct: 416 KEKEKFRTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK 475 Query: 481 KQDKALDGEVKTTLQGSLKYDGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEANFSKV 540 K DKALD E TLQGSLK+DGVMFVDYSNFKYTNASK+P+KGVG TNGVSHLE F+KV Sbjct: 476 KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEVGFNKV 535 Query: 541 AVFNLPNLNNLAITNHIRRDLEDKLLAKGLSPQEANKLIKDFLNSNKEMVGKVSNFNKAV 600 A+FNLP+LNNLAIT+ +RR+LEDKL KGLSPQEANKLIKDFL+SNKE+VGK NFNKAV Sbjct: 536 AIFNLPDLNNLAITSFVRRNLEDKLTTKGLSPQEANKLIKDFLSSNKELVGKTLNFNKAV 595 Query: 601 AEAKNTGNYDEVKKAQKDLEKSIRKREHLEKEVVKKLESRNDNKNRMEAKAQANSQKDKI 660 A+AKNTGNYDEVKKAQKDLEKS+RKREHLEKEV KKLES++ NKN+MEAKAQANSQKD+I Sbjct: 596 ADAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEI 655 Query: 661 FALINKEASKEARAAAFDPNLKGIRSELSDKLENINKNLKDFGKSFDDFKNGKNNDFSKA 720 FALINKEA+++ARA A+ NLKGI+ ELSDKLEN+NKNLKDF KSFD+FKNGKN DFSKA Sbjct: 656 FALINKEANRDARAIAYAQNLKGIKRELSDKLENVNKNLKDFDKSFDEFKNGKNKDFSKA 715 Query: 721 EETLKALKDLVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVI 780 EETLKALK VKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSDLENS+KDVI Sbjct: 716 EETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVI 775 Query: 781 INQKITDKVDNLNQAVSETKLTGDFSKVEQALAELKNLS-------------LDLGKNSD 827 INQK+TDKVDNLNQAVS K TGDFS+VEQALA+LKN S L+ K S+ Sbjct: 776 INQKVTDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNESLNARKKSE 835 Query: 828 LQKSVKNGVNGTLVGNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIY 887 + +SVKNGVNGTLVGNGLS+ EATTL+KNFSDI+KELN KL +NNNNNGLKN EPIY Sbjct: 836 IYQSVKNGVNGTLVGNGLSQAEATTLSKNFSDIKKELNAKLGNFNNNNNNGLKN--EPIY 893 Query: 888 AQVNKKKTGQVASPEESIYAQVAKKVSAKIDQLNEATSAINRKIDRINKIASAGKGVGGF 947 A+VNKKK GQ AS EE IYAQVAKKV+AKID+LN+ S G GV G Sbjct: 894 AKVNKKKAGQAASLEEPIYAQVAKKVNAKIDRLNQIAS---------------GLGVVG- 937 Query: 948 SGAGRSASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLNQAVS 1007 AGFPL+R V+DLSKVGLSR QEL ++I +LNQAVS Sbjct: 938 ---------------------QAAGFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVS 976 Query: 1008 EAKTGHFDNLEQKIDELKDSTKKNALKLFIESAKQVPTGLQAKLDNYAANSHTRINSNVR 1067 EAK G F NLEQ ID+LKDSTK N + L++ESAK+VP L AKLDNYA NSH RINSN++ Sbjct: 977 EAKAGFFGNLEQTIDKLKDSTKHNPMNLWVESAKKVPASLSAKLDNYATNSHIRINSNIK 1036 Query: 1068 NGAINERATGMLTQKNPEWLKLVNNKIVAHNVGSAHLSEYDKIGFNQKNMKDYSDSFKFS 1127 NGAINE+ATGMLTQKNPEWLKLVN+KIVAHNVGS LSEYDKIGFNQKNMKDYSDSFKFS Sbjct: 1037 NGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFS 1096 Query: 1128 TKLNNAVKDIKSNFVQFLTNTFSTGS-YSLMKANVEHGVKNT-TKSGFQKS 1176 TKLNNAVKD S F QFLTN FST S Y L + N EHG+KN TK GFQKS Sbjct: 1097 TKLNNAVKDTNSGFTQFLTNAFSTASYYCLARENAEHGIKNVNTKGGFQKS 1147
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.1 bits (73), Expect = 0.012 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVVVLVALG 98 + L + LF Q LI I V +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 119 bits (299), Expect = 5e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNIAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 266 bits (680), Expect = 2e-90 Identities = 143/154 (92%), Positives = 145/154 (94%), Gaps = 1/154 (0%) Query: 1 MEQAFFKKIVGCFCLGYLFLSSVIEAAP-DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 59 M QAFFKKIVGCFCLGYLFLSS IEA DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 60 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 119 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 120 DYQEFLKTKKLIVDAPDPKELEEQKKSSRKRKRS 153 DYQEFLKTKKLIVDAPDPKELEEQKK+ K K + Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEA 154
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 557 bits (1435), Expect = 0.0 Identities = 333/336 (99%), Positives = 335/336 (99%) Query: 1 MSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVKQ 60 MSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAV+Q Sbjct: 187 MSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQ 246 Query: 61 RAKDKINIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAY 120 RAKDKI+IKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAY Sbjct: 247 RAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAY 306 Query: 121 LTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNEQIINKE 180 LTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNEQIINKE Sbjct: 307 LTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNEQIINKE 366 Query: 181 KIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIFDDGTFT 240 KIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIFDDGTFT Sbjct: 367 KIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIFDDGTFT 426 Query: 241 YFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIKDKALVT 300 YFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIKDKALVT Sbjct: 427 YFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIKDKALVT 486 Query: 301 VINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 336 VINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 487 VINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.4 bits (99), Expect = 2e-05 Identities = 40/259 (15%), Positives = 85/259 (32%), Gaps = 36/259 (13%) Query: 118 TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDC 177 P ++ + + ++KT + ++ T + ++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 178 VSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAK 237 A++ +E KE + T E A ++E K AK Sbjct: 1083 NEVAQSGSETKETQTTETKET--------------ATVEKEEK---------------AK 1113 Query: 238 ESLKAYKDCVSRARNEKEKQECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKE 297 + ++ KQE + + P+A+ E + ++K SQ T A+ ++ Sbjct: 1114 VETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP---QSQTNTTADTEQ 1170 Query: 298 CEKLLTPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESLKAYKDCVSR 357 K + ++ + + + + P Q V ++ S K Sbjct: 1171 PAKETSSNVEQPVTEST----TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRS 1226 Query: 358 ARNEKEKQECEKLLTPEAK 376 R+ E + + Sbjct: 1227 VRSVPHNVEPATTSSNDRS 1245 Score = 36.6 bits (84), Expect = 9e-04 Identities = 35/269 (13%), Positives = 76/269 (28%), Gaps = 18/269 (6%) Query: 357 RARNEKEKQECEKLLTPEAKKLLEEAKKSLKAYKDCVSRARNEKEKQECEKLLTPEAKKL 416 + + + TP + + S +R + + + Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEI---ARVDEAPVPPPAPATPSETTETV 1040 Query: 417 LEEAKKSLKAYKDCVSRARNEKEKQECEKLLTPEAKNLLEQQALDCLKSAKTEAEKKRCV 476 E +K+ K + A E Q E ++ Q + +S E + Sbjct: 1041 AENSKQESKTVEKNEQDAT-ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 477 KDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKD 536 ++K+ AK + + K+E + + P+A+ E Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN----- 1154 Query: 537 CLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPE 596 + + +++ A + E +EQ V + N E + TP Sbjct: 1155 -IKEPQSQTNTTADTEQPAKETSSNVEQPVTE------STTVNTGNSVV--ENPENTTPA 1205 Query: 597 ARKFLAKQVLSCLEKARNEEERKACLKNI 625 + S K R+ ++ N+ Sbjct: 1206 TTQPTVNSESSNKPKNRHRRSVRSVPHNV 1234 Score = 35.4 bits (81), Expect = 0.002 Identities = 35/242 (14%), Positives = 86/242 (35%), Gaps = 5/242 (2%) Query: 65 KNAKTDEERKKCLKDLPKDLQSDILAKKSLKAYKDCVSRARNEKEKQECEKLLTPEAKKL 124 + ++ E + + P + ++ + + + EK E + T + Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 125 LEEEAKESVKAYLDC--VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAK 182 + +EAK +VKA V+Q+ +E ++ + + +K E+AK + + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 183 TEAEKKECEKLLTPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKV---LAKES 239 + K+E + + P+A+ E +K ++ + K+ V + + + Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 240 LKAYKDCVSRARNEKEKQECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECE 299 + V + + E+ + + SV++ V A T + + Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247 Query: 300 KL 301 L Sbjct: 1248 AL 1249 Score = 33.5 bits (76), Expect = 0.007 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 2/160 (1%) Query: 264 TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKSAKT 323 TP E + ++ Q TE + E ++ Q + +S Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 324 DEERKKCLKDLPKDLQKKVLAKESLKAYKDCVSRARNEKEKQECEKLLTPEAKKLLEEAK 383 +E + ++K+ AK + ++ KQE + + P+A+ E Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND- 1150 Query: 384 KSLKAYKDCVSRARNEKEKQECEKLLTPEAKKLLEEAKKS 423 K+ S+ + ++ K + ++ + E+ Sbjct: 1151 -PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTV 1189 Score = 32.3 bits (73), Expect = 0.014 Identities = 32/239 (13%), Positives = 80/239 (33%), Gaps = 8/239 (3%) Query: 34 KARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 91 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 92 KSLKAYKDCVSRARNEKEKQECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKE 151 ++ K + E ++ T E K+ E +E K + + + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 152 CEKLLTPEAKKKLEEAKKSVKAYL--DCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDC 209 ++ + + + E A+++ + SQ T A+ ++ K + ++ + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST--- 1187 Query: 210 LKSAKTDEERKKCLKDLPKDLQKKVLAKESLKAYKDCVSRARNEKEKQECEKLLTPEAK 268 + + P Q V ++ S K R+ E + + Sbjct: 1188 -TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRS 1245 Score = 31.6 bits (71), Expect = 0.028 Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 5/157 (3%) Query: 16 QKELLADMSVKAYKDCVSKARNEKEKKECEKLLTPEAKKKLE--QQVLDCLKNAKTDEER 73 E +A+ S + K ++ E + + EAK ++ Q + ++ +E Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 74 KKCLKDLPKDLQSDILAKKSLKAYKDCVSRARNEKEKQECEKLLTPEAKKLLEEEAKESV 133 + ++ + AK + ++ KQE + + P+A+ E + ++ Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155 Query: 134 KAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKS 170 K SQ T A+ ++ K + ++ + E+ Sbjct: 1156 KEP---QSQTNTTADTEQPAKETSSNVEQPVTESTTV 1189
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.5 bits (102), Expect = 2e-06 Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 23/194 (11%) Query: 246 RIKKQEEKVDAREI----KREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKLDVKEE 301 ++K+ + VD I + ++ + + AP +E V E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 302 RRRLRDERKKANATKKAMEFEEREKTHDERDERETEERRKALGMDQGNEKANAKENEQEI 361 ++ + + + A E + + + + + Q NE A + +E Sbjct: 1044 SKQ--ESKTVEKNEQDATETTAQNREVAKEAKSNVKANT------QTNEVAQSGSETKET 1095 Query: 362 KQEATKEPSNENNATQQGENKPNSKEEKRRLKEEKKKA---KAEQRAREFEQRAKEHQ-E 417 + TKE AT + E K +K E + +E K +Q E Q E E Sbjct: 1096 QTTETKET-----ATVEKEEK--AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 418 RDEKELEERRKALE 431 D + ++ Sbjct: 1149 NDPTVNIKEPQSQT 1162 Score = 36.6 bits (84), Expect = 2e-04 Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 19/164 (11%) Query: 270 EPKKANQGTENAPTLE---EKNYQKAERKLDV-----KEERRRLRDERKKANATKKAMEF 321 + EN+ EKN Q A KE + ++ + + E Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 322 EEREKTHDERDERETEERRKALGMDQGNEKANAKENEQEIKQEATKEPSNENNATQQGEN 381 +E + T + ++ E+ KA K ++ ++ K + P E + T Q + Sbjct: 1093 KETQTT-ETKETATVEKEEKA--------KVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 382 KPNSKEEKRRLKEEKKKAKAEQRAREFEQRAKEHQERDEKELEE 425 +P + + +E + EQ AKE E+ + E Sbjct: 1144 EPARENDPTVNIKE--PQSQTNTTADTEQPAKETSSNVEQPVTE 1185
>PHPHLIPASEA1#Bacterial phospholipase A1 protein signature. Length = 289 Score = 262 bits (670), Expect = 2e-88 Identities = 73/279 (26%), Positives = 117/279 (41%), Gaps = 48/279 (17%) Query: 77 YLGTYFLPFYHS-FTPIFQWYHPNINPYQRNEFKFQISFRVPVFRHILWTKGTLYLAYTQ 135 Y Y + S + +++E KFQ+S P++R IL L +YTQ Sbjct: 55 YDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGILGPNSVLGASYTQ 114 Query: 136 TDWFQIYNNPQSAPMRMINFMPELIYVYPINFKPFGGKIGNFSEIWIGWQHISNGVGGAQ 195 W+Q+ N+ +S+P R N+ P+L + +++ F G ++ +G+ H SNG Sbjct: 115 KSWWQLSNSEESSPFRETNYEPQLFLGFATDYR-FAG--WTLRDVEMGYNHDSNGRS--- 168 Query: 196 CYQPFNKEGNPENQFPGQPVIVKDYNGQKDVRWGGCRSVSAGQRPVFRLVWEKGGLKIMV 255 P ++ N R RL+ E G + V Sbjct: 169 --DPTSRSWN---------------------------------RLYTRLMAENGNWLVEV 193 Query: 256 AYWPYVPYDQSNPNLIDYMGYGNAKVDYRRGRHHFELQLYDIFTQYWRYDRWHGAFRLGY 315 W V NP++ YMGY K+ Y G + QY ++ +G LG Sbjct: 194 KPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAK-----GQY-NWNTGYGGAELGL 247 Query: 316 TYRINPFVGIYTQWFNGYGDGLYEYDVFSNRIGVGIRLN 354 +Y I V +YTQ ++GYG+ L +Y+ R+GVG+ LN Sbjct: 248 SYPITKHVRLYTQVYSGYGESLIDYNFNQTRVGVGVMLN 286
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.8 bits (66), Expect = 0.019 Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 309 EEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEIL 345 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVL 224
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 1878 bits (4866), Expect = 0.0 Identities = 1053/1285 (81%), Positives = 1133/1285 (88%), Gaps = 32/1285 (2%) Query: 1 MIIPAIVGGIATGAAVGTVSGLLGWGLKQAEEANKTPDKPDKVWRIQAGRGFNEFPNKEY 60 +IIPAIVGGIATGAAVGTVSGLLGWGLKQAEEANKTPDKPDKVWRIQAG+GFNEFPNKEY Sbjct: 39 VIIPAIVGGIATGAAVGTVSGLLGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEY 98 Query: 61 DLYKSLLSSKIDGGWDWGNAARHYWVKGGQWNKLEVDMKDAVGTYKLSGLRNFTGGDLDV 120 DLYKSLLSSKIDGGWDWGNAARHYWVK GQWNKLEVDM++AVGTY LSGL NFTGGDLDV Sbjct: 99 DLYKSLLSSKIDGGWDWGNAARHYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDV 158 Query: 121 NMQKATLRLGQFNGNSFTSFKDSADRTTRVDFNAKNISIDNFLEINNRVGSGAGRKASST 180 NMQKATLRLGQFNGNSFTS+KDSADRTTRVDFNAKNI IDNFLEINNRVGSGAGRKASST Sbjct: 159 NMQKATLRLGQFNGNSFTSYKDSADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASST 218 Query: 181 VLTLQASEGITSGKNAEISLYDGATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINT 240 VLTLQASEGITS +NAEISLYDGATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINT Sbjct: 219 VLTLQASEGITSRENAEISLYDGATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINT 278 Query: 241 SKVTGEVNFNHLTVGDRNAAQAGIIASKKTYIGTLDLWQSAGLNIIAPPEGGYKDKPNNT 300 SKVTGEVNFNHLTVGD NAAQAGIIAS KT+IGTLDLWQSAGLNIIAPPEGGYKDKPN+ Sbjct: 279 SKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDK 338 Query: 301 NSQSGAKNDKNESAKNDKQDSNTQVINPPNSGQKTEIQPTQVIDGPFAGAKDTVVNINRI 360 S + N KN+ ++ + +SNTQVINPPNS QKTEIQPTQVIDGPFAG K+TVVNINRI Sbjct: 339 PSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRI 398 Query: 361 NTNADGTIKIGGYTASLTTNAANLNIGKGGINLSNQASGRSLLVENLTGNITVDGALMVN 420 NTNADGTI++GG+ ASLTTNAA+L+IGKGGINLSNQASGRSLLVENLTGNITVDG L VN Sbjct: 399 NTNADGTIRVGGFKASLTTNAAHLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRVN 458 Query: 421 NQVGGYALAGSSANFEFKAGVDTKNGTATFNNDIHLGKAVNLRVDAHTAYFNGNIYLGKS 480 NQVGGYALAGSSANFEFKAG DTKNGTATFNNDI LG+ VNL+VDAHTA Sbjct: 459 NQVGGYALAGSSANFEFKAGTDTKNGTATFNNDISLGRFVNLKVDAHTA----------- 507 Query: 481 TNLKVNGHSAHFKNIDASKSDNGLNTSTLDLSGVTDKVNINKLTTAATNVSIKNFDIKEL 540 +FK ID + G NT LD SGVT+KVNINKL TA+TNV++KNF+I EL Sbjct: 508 ----------NFKGIDTG--NGGFNT--LDFSGVTNKVNINKLITASTNVAVKNFNINEL 553 Query: 541 VVTTRVQSFGQYTIFGENIGDQSRIGVVSLQTGYSPAYSGGVTFKSGKKLVIDEIYHAPW 600 VV T S G+YT F E+IG QSRI V L+TG YSGGV FK G+KLVI++ Y+APW Sbjct: 554 VVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIYSGGVKFKGGEKLVINDFYYAPW 613 Query: 601 NYFDARNVTDVEINKKILFGAPGNIAGKTGLMFNNLTLNSNASMDYGKDLDLTIQGHFTN 660 NYFDARN+ +VEI K+ FG G+ G LMFNNLTL NA MDY + +LTIQG F N Sbjct: 614 NYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTLGQNAVMDYSQFSNLTIQGDFVN 673 Query: 661 NQGVMNLFVQDGRVATLNAGHQASMMFNNMIDNTTGFYKPLIKVNNAQNLTKNKEHVLVK 720 NQG +N V+ G+VATLN G+ A+M F+N +D+ TGFY+PL+K+N+AQ+L KNKEHVL+K Sbjct: 674 NQGTINYLVRGGQVATLNVGNAAAMFFSNNVDSATGFYQPLMKINSAQDLIKNKEHVLLK 733 Query: 721 ARNIDYNLVGVQGASYDNISASNTNLQEQFKERLALYNNNNRMDICVVRKDNLNDIKACG 780 A+ I Y G A D+I+ N NL EQFKERLALYNNNNRMDICVVR N +DIKACG Sbjct: 734 AKIIGY---GNVSAGTDSIA--NVNLIEQFKERLALYNNNNRMDICVVR--NTDDIKACG 786 Query: 781 MAIGNQAMVNNPENYKYLEGKAWKNTGINKTANNTTIAVNLGNNSTPTSSESNTTNLPTN 840 AIGNQ+MVNNPENYKYLEGKAWKN GI+KTAN + I+V+ NSTPT + NTTNLPTN Sbjct: 787 TAIGNQSMVNNPENYKYLEGKAWKNIGISKTANGSKISVHYLGNSTPTENGGNTTNLPTN 846 Query: 841 TTNNARFARYALIKNAPFAQTSATPNLVAINKHDFGTIESVFELANRSDDIDTLYAHSGA 900 TTN RFA YALIKNAPFA+ SATPNLVAIN+HDFGTIESVFELANRS+DIDTLYA+SGA Sbjct: 847 TTNKVRFASYALIKNAPFARYSATPNLVAINQHDFGTIESVFELANRSNDIDTLYANSGA 906 Query: 901 QGRDLLQTLLIDSHNAGYARTMIDATSANEITKQLNTATDALNNIASLEHKTSGLQTLSL 960 QGRDLLQTLLIDSH+AGYARTMIDATSANEITKQLNTAT LNNIASLEHKTSGLQTLSL Sbjct: 907 QGRDLLQTLLIDSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLSL 966 Query: 961 SNAMILNSRLVNLSRRHTNNIDSFAQRLQALKDQKFASLESAAEVLYQFAPKYEKPTNVW 1020 SNAMILNSRLVNLSRRHTN+IDSFA+RLQALKDQ+FASLESAAEVLYQFAPKYEKPTNVW Sbjct: 967 SNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFASLESAAEVLYQFAPKYEKPTNVW 1026 Query: 1021 ANAIGGASLNSGGNTSLYGTSAGVDAYLNEKVEAIVGGFGSYGYSSFNNQANSLNSGANN 1080 ANAIGG SLNSGGN SLYGTSAGVDAYLN +VEAIVGGFGSYGYSSF+NQANSLNSGANN Sbjct: 1027 ANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGANN 1086 Query: 1081 ANFGVYSRIFANQHEFDFEAQGAVGSDQSSLNFKSALLRDLNQSYNYLAYGAATRASYGY 1140 NFGVYSRIFANQHEFDFEAQGA+GSDQSSLNFKSALLRDLNQSYNYLAY AATRASYGY Sbjct: 1087 TNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASYGY 1146 Query: 1141 DFVFLRNALVLKPSVGVSYNHLGSTNFESNSTNKTALKNGASSQHLFNASANVEARYYYG 1200 DF F RNALVLKPSVGVSYNHLGSTNF+SNS K ALKNGASSQHLFNASANVEARYYYG Sbjct: 1147 DFAFFRNALVLKPSVGVSYNHLGSTNFKSNSNQKVALKNGASSQHLFNASANVEARYYYG 1206 Query: 1201 DTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNTARNPLNTHARVMMGGELQLAKEVFLNL 1260 DTSYFYMNAGVLQEFANFGSSNAVSLNTFKVN RNPLNTHARVMMGGEL+LAKEVFLNL Sbjct: 1207 DTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNATRNPLNTHARVMMGGELKLAKEVFLNL 1266 Query: 1261 GFIYLHNLISNAGHFASNLGMRYSF 1285 GF+YLHNLISN GHFASNLGMRYSF Sbjct: 1267 GFVYLHNLISNIGHFASNLGMRYSF 1291
>SECA#SecA protein signature. Length = 901 Score = 28.7 bits (64), Expect = 0.005 Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 12/69 (17%) Query: 4 SPTKKDYTRYSEKQLFNLINQLEQKIKRMQNDRASFKEKMAKELEKRDQNFKDKIDALNK 63 S + R +++ N+IN +E +++++ ++ EL+ + F+ +++ Sbjct: 12 SRNDRTLRRM--RKVVNIINAMEPEMEKLSDE----------ELKGKTAEFRARLEKGEV 59 Query: 64 LLQKISQAF 72 L I +AF Sbjct: 60 LENLIPEAF 68
>SSPAKPROTEIN#Invasion protein B family signature. Length = 133 Score = 27.2 bits (60), Expect = 0.022 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query: 3 DFLKEMNKDCEDALNDQVKSFKKDFRKELYKEVLPVLREIINDDDLIDEVAFKKSVHAFT 62 + L M + ++N+ V+ + D + L LR +I DD + D + F + +H F Sbjct: 72 NILNLMLMNFSYSINELVELHRSD--EYL------QLRVVIKDDYVHDGIVFAEILHEFY 123 Query: 63 DKIK 66 +++ Sbjct: 124 QRME 127
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 32.6 bits (74), Expect = 0.003 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 13/80 (16%) Query: 103 LFDR-VSNKEGIQRVYFVTSKIDTEIRNSNMALKSGHDLTTVLSNVKEV--LSSHLNKIM 159 LF R R++ + +I E ++AL +G DL T + V E+ S+ LNK++ Sbjct: 487 LFRRKSELTRRTVRLFIIEPRIIDEGIAHHLALGNGQDLRTGILTVDEISNQSTTLNKLL 546 Query: 160 EGL----------IQKWPNQ 169 G +QKW +Q Sbjct: 547 GGSQCQPLNKAQEVQKWLSQ 566
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 41.7 bits (98), Expect = 4e-06 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 13/181 (7%) Query: 211 AASIATLSNDERELGVACVDIGGETCNLTIYSGNSIRYNKYLPIGSHHLSMDLSSMLNTP 270 AA+I G VDIGG T + + S N + Y+ + IG + + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 271 F------PYAEEVKIKYGDLSFESGEETPSQSVQIPTTGSDGNESHVVPLSRIQNIMRDR 324 + AE +K + G S G+E V+ + + I +++ Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFQIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELAKAHFTNYPVRLAA-PM 380 + +++ E + G+VLTGG AL++ + L T PV +A P+ Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL-MEETGIPVVVAEDPL 322 Query: 381 E 381 Sbjct: 323 T 323
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 145 bits (367), Expect = 7e-45 Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 22/168 (13%) Query: 22 NMDKETVAGDVSAKTVQSAPVSTETAQEKQEPKQEPAPVVEEKPAIESGTIIASIYFDFD 81 D ++ VS + Q P PAP V+ K T+ + + F+F+ Sbjct: 177 RPDNGMLSLGVSYRFGQGEAA----PVVAPAP--APAPEVQTK----HFTLKSDVLFNFN 226 Query: 82 KYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALV 138 K +K Q LD++ + V++ G TD GS YNQ L +R SV + L+ Sbjct: 227 KATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLI 286 Query: 139 IKGVEKDMIKTISFGEIKPKCTQ-----KTR----ECYRENRRVDVKL 177 KG+ D I GE P K R +C +RRV++++ Sbjct: 287 SKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 428 bits (1103), Expect = e-147 Identities = 168/570 (29%), Positives = 281/570 (49%), Gaps = 59/570 (10%) Query: 10 RLILAIALSFLFIAIYSYFFQKPNKT--TTPTTKQETTNNHTATNSNTPNAFSATQTIPQ 67 R +L IAL F+ I+ + Q N TT+ TT +A + P + + Sbjct: 5 RNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKLISVK 64 Query: 68 ENLLSAISFEHARIEIDSLGR--IKQVYLKDKKYLTPKQKGFLEHVSHLFNPKANPQTPL 125 ++L + I++ G + + K L Q L S F +A Sbjct: 65 TDVL--------DLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTG 116 Query: 126 KELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDLGALTIIK 183 ++ P A+ +PL +N A G NE V D T K Sbjct: 117 RDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTK 163 Query: 184 TLTFYDDLHYDLQIAFKSPN--------NIIPSYVITNGYKPVADLDS-----YTFSGVL 230 T Y + + + N + + P D S +TF G Sbjct: 164 TFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAA 222 Query: 231 LENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQGFEALIDSEVGT 287 D+K EK + D + + S +++ + +YF T + G + +G Sbjct: 223 YSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTNNFYTANLG- 280 Query: 288 KNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDVIEYGLITFFAKG 336 N + I K++ N ++GP+ + A++P L ++YG + F ++ Sbjct: 281 -NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQP 339 Query: 337 VFVLLDYLYQFVGNWGWAIILLTIIVRLILYPLSYKGMVSMQKLKEIAPKMKELQEKYKG 396 +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ + PK++ ++E+ Sbjct: 340 LFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGD 399 Query: 397 EPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKSSEWILWIHDLS 456 + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + + LWIHDLS Sbjct: 400 DKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLS 459 Query: 457 IMDPYFILPLLMGASMYWHQSVTPSSVTDPMQAKIFKFLPLLFTIFLITFPAGLVLYWTT 516 DPY+ILP+LMG +M++ Q ++P++VTDPMQ KI F+P++FT+F + FP+GLVLY+ Sbjct: 460 AQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIV 519 Query: 517 NNILSVLQQLIINKVLENKKRAHAQNKKES 546 +N+++++QQ +I + LE K+ H++ KK+S Sbjct: 520 SNLVTIIQQQLIYRGLE-KRGLHSREKKKS 548
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 221 bits (566), Expect = 1e-77 Identities = 65/148 (43%), Positives = 93/148 (62%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFGKLIVAVAHSSAKNPMFSLKERLEMIQLATKSFK 63 IYPG+FDP+T GH+DII R LF ++ VAV + K PMFS++ERLE I A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIILHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 35.3 bits (81), Expect = 2e-04 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%) Query: 246 SFYGIERHTSALMVFLNSSIFMLATLSLGLFLGAWIKNEAHTTQIVLISSLPLIFMMGFV 305 + G + S L ++ LA SLG+ + A + + + P++F+ G V Sbjct: 137 AALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAV 196 Query: 306 WPFESLPSYLQAFVQIVPAYHAISLLGRLNQMHAEFIDVSIHFYALIAIFIASFIASV 363 +P + LP Q + +P H+I L+ R + +DV H AL + F S Sbjct: 197 FPVDQLPIVFQTAARFLPLSHSIDLI-RPIMLGHPVVDVCQHVGALCIYIVIPFFLST 253
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.4 bits (110), Expect = 1e-07 Identities = 27/200 (13%), Positives = 63/200 (31%), Gaps = 29/200 (14%) Query: 8 KNKAILTGGGALLLGLIVLFYLAYRP--KAEVLQGFL--EAREYSVSSKVPGRIEKVFVK 63 + L + +I G L R + ++++ VK Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113 Query: 64 KGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAK-------ALSDEVKRGSRDETINSAR 116 +G+ ++KGD++ +++ EA + ++ A+ LS ++ E Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173 Query: 117 DIWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALG 176 +Q ++E R+ L E ++ +++ KY + K + Sbjct: 174 PYFQNV------SEEEVLRLTSLI----------KEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 177 GASSESKIAAKAKESEALGQ 196 ++I S Sbjct: 218 TV--LARINRYENLSRVEKS 235
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.4 bits (66), Expect = 0.041 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 56 IGGYMAMNIGANDVSNNVGPAVGSKAISMGGAILIAGICEMLGAIIAGGEVVSTIKGRI 114 G ++M++ A D++ +G+ G I I + G + G E++ + R+ Sbjct: 295 TVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV--GYELMCALALRV 351
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 31.6 bits (71), Expect = 0.014 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 20/172 (11%) Query: 641 IPKNLIKQRFFEKE-AKELEELENALNEKEADFEEFIEEHSSEEGLFYELKINESVLKKE 699 + K+L K+ EKE K+LE N+ EA + +S++ + L IN+ + Sbjct: 614 LEKSLRKREHLEKEVEKKLESKSGNKNKMEAK-----AQANSQKDEIFAL-INKEANRDA 667 Query: 700 LKNATDLEDKKILKTALELLEAKNKALKMKNKAYEELE-------LKAFHQYKNLKLGEI 752 A K I + + LE NK LK +K+++E + KA K LK G + Sbjct: 668 RAIAYAQNLKGIKRELSDKLENVNKNLKDFDKSFDEFKNGKNKDFSKAEETLKALK-GSV 726 Query: 753 KDLIIQDKWLKSLKNALENKILKRINAFTSALNEIISNYSNSLLELDKEVKE 804 KDL I +W+ ++N + +N F + N+ S + + +L+ VK+ Sbjct: 727 KDLGINPEWISKVEN-----LNAALNEFKNGKNKDFSKVTQAKSDLENSVKD 773
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.012 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 125 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 162 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 35.3 bits (81), Expect = 2e-04 Identities = 30/184 (16%), Positives = 76/184 (41%), Gaps = 12/184 (6%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GILFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIKERLKDVKNKKGVELFHKAN----KISGHQALDSDILEKGGV 216 + A LA+ ++ + +K R + + + L + + G +L +IL++ G+ Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVK-RGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 217 DN-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWVSPLTPEDVLNNPKFSTIKAIKNKQV 274 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRF 266 Query: 275 YKLP 278 ++P Sbjct: 267 QRVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.030 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 150 bits (380), Expect = 1e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEGFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.016 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 355 bits (913), Expect = e-124 Identities = 121/345 (35%), Positives = 194/345 (56%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDVQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++DV +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGNSS-----------NLLSAHIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ S SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSTKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + T K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPIVVTSQDITLKITKEPLDN--------SKNAQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSANGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A+G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.028 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 37.5 bits (86), Expect = 3e-05 Identities = 45/207 (21%), Positives = 91/207 (43%), Gaps = 14/207 (6%) Query: 50 PLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKIGFKEG 108 E I + + L L +LQMQ A E+ +A I + G+K G++EG Sbjct: 19 QAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQGYQEG 75 Query: 109 EEKMRNELTHSVNEEKNQLLHAITALDEKMKKSQDHLMALE----KELSAIAIDIAKEVI 164 + L + E K+Q + + + + Q L AL+ L +A++ A++VI Sbjct: 76 ---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVI 132 Query: 165 LKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---KLESNE 221 + ++ + + + L + L + L+V+P D +++ L + +L + Sbjct: 133 GQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDP 192 Query: 222 AISKGGVMITSSNGSLDGNLMERFKTL 248 + GG +++ G LD ++ R++ L Sbjct: 193 TLHPGGCKVSADEGDLDASVATRWQEL 219
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.008 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 39.1 bits (91), Expect = 3e-05 Identities = 57/315 (18%), Positives = 104/315 (33%), Gaps = 67/315 (21%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSVILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ +I+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFLLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALFSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDGQTTFKTTIKEKTQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 263 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 264 LKIFLTNSSSFSPK-------ESSFIMLLALSYFIFLQPLCG---MLADKIKRTQMLMVF 313 IF+ + + ++ M+ L I + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 314 AIAGLIVTPVVFYGI 328 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.008 Identities = 33/160 (20%), Positives = 53/160 (33%), Gaps = 30/160 (18%) Query: 248 YPKRNRFNDLSNPTNPTLKE-----VKQETKER-------EPTPKPATLKPVMPASAPNT 295 KRN+ D +N T P + V +E P P PAT A N+ Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044 Query: 296 DNDNKTE--NHKAPNHPIKEENPQEENIKENIKENIKEN----------------IKENI 337 ++KT N + + + K N+K N + N KE Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 338 KERIKERIKEEENEAQNAPSFSPITPTSAKKPVMVKELSE 377 +E+ K E + Q P + ++ V+ +E Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 29.1 bits (65), Expect = 0.014 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 7/86 (8%) Query: 110 LNSFCFGFRFFDENLFNPSFLKHFLRDYNFRKNISKVANGVTRFNVSKQLLSKITIPIPP 169 LN FC F + F+ + LKHF R + + + +N++ + +I +P Sbjct: 336 LNYFCQSFNSIIPDRFS-NALKHFYRKQYYTMDYTD------NYNINGFVNGQINTKLPL 388 Query: 170 LEIQQEIVKILDAFTELNTELNTELK 195 I+ + L E N L Sbjct: 389 SNKNTNIISKPEKVVNLVNENNISLM 414
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 30.0 bits (67), Expect = 0.026 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 633 QEVHAYFQDYIHQKREEEFQKLIEENRLNEEKAYLFMQHAFKGGEISF-SGTEFPKII-- 689 ++V + FQ + KR EF K EEN+ + A+L + K G + SG ++ KII Sbjct: 79 KDVLSKFQKDLMAKRSAEFNKKAEENKAKGD-AFL-SANKSKPGIVVLPSGLQY-KIIDA 135 Query: 690 --GEKPSRFD 697 G KP + D Sbjct: 136 GTGAKPGKSD 145
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 27.9 bits (62), Expect = 0.038 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 7/55 (12%) Query: 138 TPNLPEVFALTGVQV-----RDDKSASKAMGILRDLGVKNAVIKGGHTEHFQGEF 187 LPEV T V + ++D + ++ V + GGH F ++ Sbjct: 177 YLTLPEVNKQTTVPMLCLYGKEDDAPLHLCPEVKQPNVTVMELSGGH--SFDDDY 229
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 70.2 bits (172), Expect = 1e-15 Identities = 44/238 (18%), Positives = 96/238 (40%), Gaps = 34/238 (14%) Query: 6 TILITGGTGSFGKRFARKVLDTTNAKKIIV------YSRDELKQSEMAMEFNDPRMRFFI 59 L+TG G G ++++L+ +++ Y LKQ+ + + P +F Sbjct: 2 KYLVTGAAGFIGFHVSKRLLE--AGHQVVGIDNLNDYYDVSLKQARLEL-LAQPGFQFHK 58 Query: 60 GDVRDLERLN--YALEGVGICIHAAAIKHVPIAEYNPLECIKTNIMGASNVINACLKNEV 117 D+ D E + +A + V + NP +N+ G N++ C N++ Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 118 SQVIALST---------------DKAANPINLYGATKLCSDKLFVSANNFKGSSQTQFSV 162 ++ S+ D +P++LY ATK ++ + + ++ G T Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL-- 176 Query: 163 VRYGNVVGSRG----SVVPFFKKLVQNKASEIPITDIRMTRFWITLDEGVSFVLKSLK 216 R+ V G G ++ F K +++ K+ ++ +M R + +D+ +++ Sbjct: 177 -RFFTVYGPWGRPDMALFKFTKAMLEGKSIDV-YNYGKMKRDFTYIDDIAEAIIRLQD 232
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 31.6 bits (71), Expect = 0.002 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 10/90 (11%) Query: 161 EAEAPIENHEVTPPPNSTQDTQQ-----DFINETQQNPKEPSDPCKIAPQKISFNQVVFK 215 +A A + + P + Q D I++TQ + ++ + ++ N V+ Sbjct: 14 QATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTD 73 Query: 216 KIKRKLNHFIGNILARTEVYKKLVAKYDEL 245 K ++ +G +V KLVA Y E+ Sbjct: 74 MQKASVSMQMG-----IQVRNKLVAAYQEV 98
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 28.5 bits (63), Expect = 0.017 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Query: 60 GELVPLEIVVETILSAIKSSDKGIILIDGYPRSVEQMQALDKELSAQNEVVL 111 G+L+ I VE LS I + D L+ P++ E++ ALDKEL A+ + L Sbjct: 127 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.1 bits (130), Expect = 3e-10 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGKELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKIIKADSRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK LPV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.0 bits (67), Expect = 0.001 Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 16 KRKRLLTELAELEAEIKVSSERKSSFNISLSPS 48 R +L ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 270 bits (692), Expect = 3e-75 Identities = 102/394 (25%), Positives = 182/394 (46%), Gaps = 14/394 (3%) Query: 2809 NTVNWLNALFVAKGGNPLFAPYYLQDNSTKHIVTLMKDITSALGMLSKSNLKNNSTDVLQ 2868 + L L + + +A + S I + T+ L ++ K + L Sbjct: 907 QGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLS 965 Query: 2869 LNTYTQQMGRLAKLSSFASFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKLKNN 2928 L+ RL LS + F++RL +LK+QRFA + +A +V+ +++ + + N Sbjct: 966 LSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEKPTN 1024 Query: 2929 LWATGVGGVSFVENGTGTLYGINVGYDRFIKG---VIVGGYAAYGYSGFYER--ITSSKS 2983 +WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + +S + Sbjct: 1025 VWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGA 1084 Query: 2984 DNVDVGLYARAFIKKSELTFSVNETWGANKTQISSNDTLLSMINQSYQYSTWTTNARVNY 3043 +N + G+Y+R F + E F G++++ ++ LL +NQSY Y ++ R +Y Sbjct: 1085 NNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASY 1144 Query: 3044 GYDFMFKNKSVIVKPQIGLRYYYIGMTGLEGVMNNALYNQFKANADPSKKSVLMIDFAFE 3103 GYDF F ++++KP +G+ Y ++G T + + S + + E Sbjct: 1145 GYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASANVE 1200 Query: 3104 NRHYFNKNSYFYTIGGIGRDLLVRSMGDKLVRFIGDNILSYRKGELYNTFVNITTGGEIR 3163 R+Y+ SYFY G+ ++ + V + + R NT + GGE++ Sbjct: 1201 ARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGGELK 1257 Query: 3164 LFKSFYVNAGVGARFGLDYKMINITGNIGMRLAF 3197 L K ++N G L + + N+GMR +F Sbjct: 1258 LAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 898 bits (2321), Expect = 0.0 Identities = 284/1038 (27%), Positives = 516/1038 (49%), Gaps = 40/1038 (3%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYTKNTIKPMLQKIDGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L +++GVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELAILVNAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q +I+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-NYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISVMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESRYTKLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKLGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEHELGQFELMSTLRKELKS 631 + + E FT + G QN FV LKP +ER E ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNG-DENSAEAVIHRAKMELGK 656 Query: 632 MPEAKGLESINLSEVSLIGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKI 691 + + + N+ + G ++ F + + D + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 EGYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPK 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + + Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 812 AGISLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLIALATAFVLIYMILAAL 871 G S G+ + + +N L G Y +TG + + S + +A +FV++++ LAAL Sbjct: 832 PGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890 Query: 872 YESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANE 931 YES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A + Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950 Query: 932 -ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGL 990 K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + GG+ Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010 Query: 991 MISMVLSLLIVPVFYRLL 1008 + + +L++ VPVF+ ++ Sbjct: 1011 VSATLLAIFFVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.0 bits (122), Expect = 1e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLESYEFN 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 31.3 bits (71), Expect = 0.003 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLESYEFNYRRLESDYAYSIALLNKTI 127 +++ S +++ + ++ K+ D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.047 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 16/113 (14%) Query: 203 LARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDL-----QSLKAQGNLSEY--DILDMQ 255 LAR+ + K+ + + L K + + ++A L Y + ++ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 256 FALEQNRLTLEYLTNLSVKNLKKTTIDVPNLQLRERQD-LVSLREQISALKYQ 307 + + + +T K +D +LR+ D + L +++ + + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.006 Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 20/95 (21%) Query: 60 ILENDDETNLKKIAYADFSKLAECVRPSGFYNQKAKRLINLSENILKDFQSFENFKQEAT 119 L + +A+ + + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAREVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>FLAGELLIN#Flagellin signature. Length = 507 Score = 243 bits (622), Expect = 1e-76 Identities = 125/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKISSSAGTGIGVLAEVINKDSNQTGVRAHASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQNGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SLDGRGIEIKTDSVSSGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + +G V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFSTIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDVAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 32 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 91 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 92 EVMVFERNLAIRLNEIL 108 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 50.8 bits (121), Expect = 2e-09 Identities = 23/61 (37%), Positives = 29/61 (47%) Query: 81 PGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKPEPKKPNHKHKALKKV 140 P A +P +P P P P P+ KP+PKPKPKPKP K + +K V Sbjct: 58 PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 117 Query: 141 E 141 E Sbjct: 118 E 118 Score = 44.2 bits (104), Expect = 2e-07 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 91 PQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKPEPKKPNHKHKALKKVEKVEEKKV 148 PQ PP P P P P+ P KP+PK K K +KKV++ ++ V Sbjct: 58 PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP-KPKPVKKVQEQPKRDV 114 Score = 41.1 bits (96), Expect = 3e-06 Identities = 23/63 (36%), Positives = 32/63 (50%) Query: 98 PTPPTPPTPPKPIEKPKPEPKPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKK 157 P PP+P+ +P+PEP+P P+P E K K K + KKV E+ K + K Sbjct: 56 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVK 115 Query: 158 IVE 160 VE Sbjct: 116 PVE 118 Score = 38.4 bits (89), Expect = 2e-05 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 74 QDPSKNTPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKP--KPKPEPKK 129 Q +P P P P PKP KPKP+P K +PK + K Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKP 116 Score = 36.9 bits (85), Expect = 6e-05 Identities = 42/216 (19%), Positives = 75/216 (34%), Gaps = 36/216 (16%) Query: 98 PTPPTPPTPPKPIEKPKPEPKPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKK 157 P PP +P +P EP+P+P+P PEP K VV EK + K Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE---------------APVVIEKPKPKP 96 Query: 158 IVEQKVEQKKIEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRDIDELYGEEF 217 + K +K E+ K K + P N T + Sbjct: 97 KPKPKPVKKVQEQPKRDVKPVESR----------PASPFENTAPARLTSSTATAATSKPV 146 Query: 218 GDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDISDLKIII 277 + + + RN + YP A L +G V+F + P+G + +++I+ Sbjct: 147 TSVASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQILS 195 Query: 278 GSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 313 M + ++ + +P + ++ I + Sbjct: 196 AKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 34.2 bits (78), Expect = 4e-04 Identities = 16/57 (28%), Positives = 23/57 (40%) Query: 74 QDPSKNTPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKPEPKKP 130 +P P+P P++ P P P PKP K + +PK KP +P Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRP 121 Score = 31.9 bits (72), Expect = 0.002 Identities = 13/53 (24%), Positives = 17/53 (32%) Query: 75 DPSKNTPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKPEP 127 +P P + P P P P K E+PK + KP P Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASP 124
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.5 bits (69), Expect = 0.003 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 87 LQSYSVMLFFNLLLLTDILGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGMIALVALS 146 L Y F L+L+ +LPFS S + + +L PLL + AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 147 SSLL 150 S ++ Sbjct: 101 SHVV 104
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 27.8 bits (62), Expect = 0.042 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 10/53 (18%) Query: 14 WVGTIIIVLLVIFFIAQAFIIPSRSMVGTLYEGDMLFVKKFSYGIPIPKIPWI 66 W+G L ++ ++ S+VG ++ ++ PIP P++ Sbjct: 225 WLG--WQALPIVLLLS--------SLVGAFMGIGLILLRNHHQSKPIPFGPYL 267