>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1043 bits (2700), Expect = 0.0 Identities = 356/569 (62%), Positives = 445/569 (78%), Gaps = 4/569 (0%) Query: 3 KISRKEYASMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR YA+M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKF 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNIGFLAKGNASNDASLADQIEAGAIGLKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MN+ F KGNAS +L + + GA LK+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTYHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H YHTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.0 bits (104), Expect = 7e-07 Identities = 55/271 (20%), Positives = 103/271 (38%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLICYFD 87 L+ S +T H L + LM + L LS + +S A+ + I Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKENKRALVGGFIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + ++RA GF+ + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFVLSLTGLKN-HSLKKKSVKKEESAFKIPFHL----- 200 + ++ + + F+ L H +++ +++E F Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLISCALNAIGFLPHTLFWVDYLIRHLNISPAIAGTSWAFFG-FGATLGSLISGP 256 L+ + + +G +P L WV + + G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILILKSIACFLPIFFHQI 287 +A +LG + A + +I L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 65.1 bits (158), Expect = 4e-13 Identities = 39/227 (17%), Positives = 77/227 (33%), Gaps = 17/227 (7%) Query: 162 LPTLNDQEEKEEVKKEIKETPQEEEKPKDDEIQEGETLKDEEVSKELETQE----ELEIP 217 P+ + E K+E K + E+ + Q E K+ + + + TQ + Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 218 KEETQEQAKEQESIKEKMQEIKEEKQGKTQDSPSAQELEAMQELVKEIQENSNGQEDKKE 277 +ETQ ++ + EK ++ K E + + ++ QE + +Q + + Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Query: 278 TQELETPQETEKQELETPQELETQESAEIPQENTETPQETPQELEIQESAETQES-AEIP 336 T ++ PQ +T +A+ Q ET Q + + T S E P Sbjct: 1152 TVNIKEPQS------------QTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENP 1199 Query: 337 QETEKQELETPQETAQENKETPQESAEIPQETEKQELETPQETQQEN 383 + T + + NK + + E T + Sbjct: 1200 ENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRST 1246 Score = 65.1 bits (158), Expect = 5e-13 Identities = 47/289 (16%), Positives = 90/289 (31%), Gaps = 11/289 (3%) Query: 211 QEELEIPKEETQEQAKEQESIKEKMQEIKEEKQGKTQ---DSPSAQELEAMQELVKEIQE 267 E+ + T E+ + P A + Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044 Query: 268 NSNGQEDKKETQELETP--QETEKQELETPQELETQESAEIPQENTETPQETPQELEIQE 325 + +K Q+ Q E + ++ E+ Q +ET + E + Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 326 SAETQESAEIPQETEKQELETPQETAQENKETPQESAEIPQ-ETEKQELETPQETQQENT 384 + E +E A++ ETEK + E P+ T+Q + + Q PQ E ++ T + ++ Sbjct: 1105 TVEKEEKAKV--ETEKTQ-EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 385 ETPQESAEIPQETEKQELETP--QETPQENTETPQESAETPQEKETQKLENQEDHYESIE 442 E P + +E P + T + E+ E TQ N E + Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKN 1221 Query: 443 DIPEPVMAQAMGEALPFLNESVAKTPNNENDTETPKESVIKTPQEKEES 491 V + + + T + T T +V+ + K + Sbjct: 1222 RHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQF 1270 Score = 64.3 bits (156), Expect = 8e-13 Identities = 55/287 (19%), Positives = 105/287 (36%), Gaps = 36/287 (12%) Query: 241 EKQGKTQDSPSAQELEAMQELVKEIQENSNGQEDKKETQELETPQETEKQELETPQELET 300 EK+ +T D+ + +Q V + N+ +E+ E Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNN--------------------EEIARVDEAPV 1025 Query: 301 QESAE-IPQENTETPQETPQELEIQESAETQESAEIPQETEKQELETPQETAQENKETPQ 359 A P E TET E + QES +++ + ET Q E +E K Q Sbjct: 1026 PPPAPATPSETTETVAENSK----QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQ 1081 Query: 360 ESAEIPQETEKQELETPQETQQENTETPQESAEIPQETEKQELETPQETPQENTETPQES 419 + E+ Q E + Q T+ + T T ++ +E K E E QE P+ ++ + Sbjct: 1082 -TNEVAQS--GSETKETQTTETKETATVEK-----EEKAKVETEKTQEVPKVTSQVSPKQ 1133 Query: 420 AETPQEKETQKLENQEDHYESIEDIPEPVMAQAMGEALPFLNESVAKTPNNENDTETPKE 479 ++ + + + D +I++ A E S + P E+ T Sbjct: 1134 EQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGN 1193 Query: 480 SVIKTPQEKEESDKNSSPLELRLNLQDLLKSLNQESLKSLLENKTLS 526 SV++ P+ + + + K+ ++ S++S+ N + Sbjct: 1194 SVVENPENTTPATTQP---TVNSESSNKPKNRHRRSVRSVPHNVEPA 1237 Score = 45.8 bits (108), Expect = 4e-07 Identities = 28/191 (14%), Positives = 67/191 (35%), Gaps = 5/191 (2%) Query: 146 DLKALAQEEPNNEEQLLPTLNDQEEKEEVKKEIKET-PQEEEKPKDDEIQEGETLKDEEV 204 + A +E + + E + E KET E ++ E +E ++ E+ Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKT 1119 Query: 205 SKELETQEELEIPKEETQEQAKEQESIKEKMQEIKEEKQGKTQDSPSAQELEAMQELVKE 264 + + ++ +E+++ + E +E + ++ ++ + E A + Sbjct: 1120 QEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNV 1179 Query: 265 IQENSNGQEDKKETQELETPQETEKQELETPQELETQESAEIPQE-NTETPQETPQELEI 323 Q + +E P+ T T Q ES+ P+ + + + P +E Sbjct: 1180 EQPVTESTTVNTGNSVVENPENTTP---ATTQPTVNSESSNKPKNRHRRSVRSVPHNVEP 1236 Query: 324 QESAETQESAE 334 ++ S Sbjct: 1237 ATTSSNDRSTV 1247 Score = 37.7 bits (87), Expect = 1e-04 Identities = 28/242 (11%), Positives = 61/242 (25%), Gaps = 7/242 (2%) Query: 148 KALAQEEPNNEEQLLPTLNDQEEKEEVKKEIKETPQEEEKPKDDEIQEGETLKDEEVSKE 207 A + E + EKEE K E QE K + E + + E Sbjct: 1085 VAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144 Query: 208 LETQEELEIPKEETQEQAKEQESIKEKMQEIKEEKQGKTQDSPSAQELEAMQELVKEIQE 267 + + + +E Q Q ++ +E + +S + ++ E + Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTP 1204 Query: 268 NSNGQEDKKETQELETPQETEKQELETPQELETQESAEIPQENTETPQETPQELEIQESA 327 + E+ + + E A + T + Sbjct: 1205 ATTQPTVNSESSN----KPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAV 1260 Query: 328 ETQESAEIPQETEKQELETPQETAQENKETPQESA---EIPQETEKQELETPQETQQENT 384 + A+ Q +Q + + + ++T Sbjct: 1261 LSDARAKAQFVALNVGKAVSQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQYRRFSSKST 1320 Query: 385 ET 386 +T Sbjct: 1321 QT 1322
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 191 bits (486), Expect = 3e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.009 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 30 VVALLGESGAGKSTILRILAGLE 52 V L G G GKST++ L GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 196 bits (501), Expect = 4e-57 Identities = 115/461 (24%), Positives = 189/461 (40%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKGTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + ++ TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPANPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 403 bits (1037), Expect = e-146 Identities = 252/260 (96%), Positives = 255/260 (98%) Query: 1 MKANNHFKDFAWKKCLLGVSVVALLVGCSPHIIETNEVTLKLNYHPASEKVQALDEKILL 60 MKANNHFKDFAWKKCLLG SVVALLVGCSPHIIETNEV LKLNYHPASEKVQALDEKILL Sbjct: 1 MKANNHFKDFAWKKCLLGASVVALLVGCSPHIIETNEVALKLNYHPASEKVQALDEKILL 60 Query: 61 LRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQGYKVINVDSSDKDDFSFAQKKEGYLA 120 LRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQGYKVINVDSSDKDDFSFAQKKEGYLA Sbjct: 61 LRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQGYKVINVDSSDKDDFSFAQKKEGYLA 120 Query: 121 VAMSGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLISAGFIKVTILEPMSGESLDSF 180 VAM+GEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLI AGF+KVTILEPMSGESLDSF Sbjct: 121 VAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFVKVTILEPMSGESLDSF 180 Query: 181 TMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTDNSNDAIKSALNKIFTSIMQEIDKKLT 240 TMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTDNSNDAIKSALNKIF +IMQEIDKKLT Sbjct: 181 TMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTDNSNDAIKSALNKIFANIMQEIDKKLT 240 Query: 241 QKNLESYQKDAKELKNKRNR 260 QKNLESYQKDAKELK KRNR Sbjct: 241 QKNLESYQKDAKELKGKRNR 260
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 124 bits (312), Expect = 1e-36 Identities = 78/250 (31%), Positives = 113/250 (45%), Gaps = 11/250 (4%) Query: 5 GKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDA 64 GK ITGA++GIG +A+TLAS G + N E + + + L+ + A D Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 65 ASESDFVEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCRE 124 + E I + G + LVN AGV+R L + E++ N T F R Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 125 ALKVMSKSRFGSVVNIASIIGERGNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVT 184 K M R GS+V + S Y++SK + +K E A NIR N V+ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 185 PGFIETDMNANL--KDELKADYVK--------NIPLNRLGAAKEVAEAVAFLLSDHSSYI 234 PG ETDM +L + +K IPL +L ++A+AV FL+S + +I Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 235 TGETLKVNGG 244 T L V+GG Sbjct: 247 TMHNLCVDGG 256
>PF01206#SirA family protein Length = 76 Score = 26.6 bits (59), Expect = 0.004 Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 19 SGKEIEVLSTKPEMRIDISSFC 40 +G+ + V++T P D SF Sbjct: 31 AGEVLYVMATDPGSVKDFESFS 52
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 1664 bits (4310), Expect = 0.0 Identities = 916/1168 (78%), Positives = 1010/1168 (86%), Gaps = 36/1168 (3%) Query: 7 IKNPYLDQTP-SQTAFDPQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAFNK 65 + N +DQ P ++ AF+PQQFINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNRQAF Sbjct: 1 MTNETIDQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG 60 Query: 66 ISQLREEYANKAIKNPTKKNQYFSEFIGKSNDLINKDNLIDTDSSTKSFEKFGTERYQIF 125 ISQLREEY+NKAIKNPTKKNQYFS+FI KSNDLINKDNLID +SSTKSF+KFG +RY+IF Sbjct: 61 ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIF 120 Query: 126 MNWVSHQKDPSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSDE 185 +WVSHQ DPSKINT+ IRNFMENIIQPPI DDKEKAEFL+SAKQSFAGIIIGNQIR+D+ Sbjct: 121 TSWVSHQNDPSKINTRSIRNFMENIIQPPILDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ 180 Query: 186 KFMGVFEESLKERQEAEKKGELAGGDWFDIFLSFVFGKEQSSDLKETLNQEPRPSVEQNI 245 KFMGVF+ESLKERQEAEK GE GGDW DIFLSF+F K+QSSD+KE +NQEP P V+ +I Sbjct: 181 KFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI 240 Query: 246 ATTPTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS 305 ATT TDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS Sbjct: 241 ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS 300 Query: 306 SMLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINMHLKNGSGLV 365 S+LMGSH+ IEPEKVSLLYG NGGP ARHDWNATVGYK+QQGNNVAT+IN+H+KNGSGLV Sbjct: 301 SVLMGSHNGIEPEKVSLLYGGNGGPGARHDWNATVGYKDQQGNNVATIINVHMKNGSGLV 360 Query: 366 IAGNENGINNPSFYLYKKDQLTGLKQALSQEEIQNKVDFMEFLAQNNARLDNLSEEEKGK 425 IAG E GINNPSFYLYK+DQLTG ++ALSQEEIQNK+DFMEFLAQNNA+LDNLSE+EK K Sbjct: 361 IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAKLDNLSEKEKEK 420 Query: 426 FQNEIGNFQKDPKAYLDALGNDRIAFVSKKDQKHLALVTEFGNGGLSYTLKDYGKKQDRA 485 F+ EI +FQKD KAYLDALGNDRIAFVSKKD KH AL+TEFGNG LSYTLKDYGKK D+A Sbjct: 421 FRTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA 480 Query: 486 LDRETKTTLQGNLKDDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKVAVFNL 545 LDRE TLQG+LK DGVMFV+YSNFKYTNASK+PN+G+G TNGVSHLE F+KVA+FNL Sbjct: 481 LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEVGFNKVAIFNL 540 Query: 546 SDLNSLAISSFARRNLEDTLIAKGLPPKEANKIIKDFLNSNKELLGKSLNFNKAVAEAKN 605 DLN+LAI+SF RRNLED L KGL P+EANK+IKDFL+SNKEL+GK+LNFNKAVA+AKN Sbjct: 541 PDLNNLAITSFVRRNLEDKLTTKGLSPQEANKLIKDFLSSNKELVGKTLNFNKAVADAKN 600 Query: 606 TGNYDGVKKAQKDLEKSIRKRELLEKEVTKKFESKSGNKNKMEAKAQANSKKDEIFALIN 665 TGNYD VKKAQKDLEKS+RKRE LEKEV KK ESKSGNKNKMEAKAQANS+KDEIFALIN Sbjct: 601 TGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALIN 660 Query: 666 KEAYKDARITAYAQNLKNIKRELSDKIENINKNLKDFGQSFDALKSGKNKDFSKAEETLK 725 KEA +DAR AYAQNLK IKRELSDK+EN+NKNLKDF +SFD K+GKNKDFSKAEETLK Sbjct: 661 KEANRDARAIAYAQNLKGIKRELSDKLENVNKNLKDFDKSFDEFKNGKNKDFSKAEETLK 720 Query: 726 ALKSSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVLINQEI 785 ALK SVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENS+KDV+INQ++ Sbjct: 721 ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKV 780 Query: 786 TDKVDNLNQAVLIAKAIGDFSGVEQALAELKNFSTDQ-----------KVGKNSDLQKSV 834 TDKVDNLNQAV +AKA GDFS VEQALA+LKNFS +Q K S++ +SV Sbjct: 781 TDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNESLNARKKSEIYQSV 840 Query: 835 KNGVNEILVGNGLSKTEATTLTKKFSDIKKELNEKFANFNKNNDGLKNSAEPIYAQVNKK 894 KNGVN LVGNGLS+ EATTL+K FSDIKKELN K NFN NN+ EPIYA+VNKK Sbjct: 841 KNGVNGTLVGNGLSQAEATTLSKNFSDIKKELNAKLGNFN-NNNNNGLKNEPIYAKVNKK 899 Query: 895 KTGQAASPEEPIYTQVAKKVNAKIDQLNKNASASKGVGDFSGAGRLDSPEPIYATIDDLG 954 K GQAAS EEPIY QVAKKVNAKID+LN+ AS VG +G Sbjct: 900 KAGQAASLEEPIYAQVAKKVNAKIDRLNQIASGLGVVGQAAG------------------ 941 Query: 955 GSFSLKRHAKVDDLTKVGLSREQELTQKIGNLNQAVSEAKAGFFGNLEQTMDRLKDSTKK 1014 F LKRH KVDDL+KVGLSR QEL QKI NLNQAVSEAKAGFFGNLEQT+D+LKDSTK Sbjct: 942 --FPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDKLKDSTKH 999 Query: 1015 NVVNLWVEDTKKVPTSLQAKLDNYTTNNHTRINSNVKNGTINEKAIGMLTQKNPEWLKLV 1074 N +NLWVE KKVP SL AKLDNY TN+H RINSN+KNG INEKA GMLTQKNPEWLKLV Sbjct: 1000 NPMNLWVESAKKVPASLSAKLDNYATNSHIRINSNIKNGAINEKATGMLTQKNPEWLKLV 1059 Query: 1075 NDKIVAHNVGSTPLSDYDKIGFNQKNMKDYSDSFKFSTKLSNAVKNIKSGFEQFLTDCIS 1134 NDKIVAHNVGS PLS+YDKIGFNQKNMKDYSDSFKFSTKL+NAVK+ SGF QFLT+ S Sbjct: 1060 NDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDTNSGFTQFLTNAFS 1119 Query: 1135 AGSYNPM---KAEHGVKNINTKSGFQKS 1159 SY + AEHG+KN+NTK GFQKS Sbjct: 1120 TASYYCLARENAEHGIKNVNTKGGFQKS 1147
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 118 bits (298), Expect = 6e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNIAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIRREKVKNSPLTRLTFFITIKITPDTMENYEYITKKEVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 869 bits (2246), Expect = 0.0 Identities = 511/522 (97%), Positives = 514/522 (98%) Query: 1 MEQAFFKKIVGCFCLGYLFLSSVIEAAAPDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 M QAFFKKIVGCFCLGYLFLSS IEA A DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 181 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 241 EETIKQRAKDKINIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 EE ++QRAKDKI+IKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 301 NFASAYLTVKLEYPQRHEVSSVIEGELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 NFASAYLTVKLEYPQRHEVSSVIE ELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.9 bits (90), Expect = 2e-04 Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 21/159 (13%) Query: 581 TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDC 640 P ++ + + ++KT + ++ T + ++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 641 VSQAKTEAEKKECEKLLTPEARKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAK 700 A++ +E KE + T E + +++ AK E EK + V KV ++ Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEE------KAKVETEKTQEV--------PKVTSQ 1128 Query: 701 ESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKE 739 S K Q ++E + + E + ++E + Sbjct: 1129 VSPK-------QEQSETVQPQAEPARENDPTVNIKEPQS 1160 Score = 36.6 bits (84), Expect = 0.001 Identities = 34/217 (15%), Positives = 69/217 (31%), Gaps = 14/217 (6%) Query: 872 TPEAKKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQALDCLKNAKT 931 TP E K ++ Q TE + E ++ Q + ++ Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 932 EAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEARKLLEEAK 991 E + ++K+ AK + + K+E + + P+A E A+ Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA----EPAR 1147 Query: 992 ESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKE 1051 E+ + + +++ A + E +EQ V +S + T E Sbjct: 1148 ENDPTVN--IKEPQSQTNTTADTEQPAKETSSNVEQPVTES--------TTVNTGNSVVE 1197 Query: 1052 CEKLLTPEARKFLAKQALSCLEKARNEEERKACLKNI 1088 + TP + S K R+ ++ N+ Sbjct: 1198 NPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNV 1234 Score = 35.0 bits (80), Expect = 0.003 Identities = 39/245 (15%), Positives = 91/245 (37%), Gaps = 12/245 (4%) Query: 674 KNAKTEAEKKRCVKDLP-KDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKK 732 + + E+ V + P ++ + + ++KT + ++ T + ++ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 733 LLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRC 792 + +EAK ++KA A++ E KE + T E + +++ KT+ K Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVET-EKTQEVPKVT 1126 Query: 793 VKDLPKDLQKKVL------AKESVKAYL--DCVSQAKTEAEKKECEKLLTPEARKLLEEA 844 + PK Q + + A+E+ + SQ T A+ ++ K + + + E+ Sbjct: 1127 SQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186 Query: 845 KESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQEVKKSVKAYLDCVSQAKTEAEKK 904 + V + + E+ + ++SV++ V A T + + Sbjct: 1187 TTVNTG--NSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDR 1244 Query: 905 ECEKL 909 L Sbjct: 1245 STVAL 1249 Score = 33.9 bits (77), Expect = 0.008 Identities = 28/187 (14%), Positives = 67/187 (35%), Gaps = 4/187 (2%) Query: 497 KARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 554 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 555 ESVKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKE 614 E+ K E ++ T E K+ E +E K + + + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 615 CEKLLTPEAKKKLEEAKKSVKAYL--DCVSQAKTEAEKKECEKLLTPEARKLLEQQALDC 672 ++ + + + E A+++ + SQ T A+ ++ K + + + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 673 LKNAKTE 679 N+ E Sbjct: 1191 TGNSVVE 1197 Score = 32.3 bits (73), Expect = 0.019 Identities = 38/242 (15%), Positives = 88/242 (36%), Gaps = 6/242 (2%) Query: 528 KNAKTDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQARTEAEKKECEKLLTPEAKKL 587 + ++ E + + P + E+ + + Q EK E + T + Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 588 LEEEAKESVKAYLDC--VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAK 645 + +EAK +VKA V+Q+ +E ++ + + +K E+AK + + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 646 TEAEKKECEKLLTPEARKLLEQQALDCLKNAK----TEAEKKRCVKDLPKDLQKKVLAKE 701 + K+E + + P+A E +K + T A+ ++ K+ ++++ V Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 702 SVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECE 761 +V V + + + + K + S+++ V A + Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247 Query: 762 KL 763 L Sbjct: 1248 AL 1249
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.4 bits (66), Expect = 0.035 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 10/53 (18%) Query: 328 EEREKKLLAEKEKQ--------EAELAKY--KLKDLENQKKLKALEAELKKKN 370 E +E L K E ++ +Y K+ +LE ++ + L + L Sbjct: 62 ERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNSP 114
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 279 bits (714), Expect = 9e-97 Identities = 67/285 (23%), Positives = 126/285 (44%), Gaps = 43/285 (15%) Query: 1 MERSLIFKKVRVYSKMLVVLGLSSVLIGCAMNPSAETKTQNDAKNQQPVQTHERMKTSSE 60 M+ + FK + K L+ + ++L+GC S N+ + H +SE Sbjct: 1 MKANNHFKDF-AWKKCLLGASVVALLVGC----SPHIIETNEVAL--KLNYH----PASE 49 Query: 61 YVTPLDFNYAIHIVQAPQNHHIVGILAPRIQVSDNL-KPYIDKFQDALANQIQTIFEKRG 119 V LD + +L P Q SDN+ K Y +KF++ +++ I + +G Sbjct: 50 KVQALD--------------EKILLLRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQG 95 Query: 120 YQVLRF--QDEKALSVQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNL--NTLVDQ-- 173 Y+V+ D+ S K++ + + + G + + D K ++ + P L +T +D+ Sbjct: 96 YKVINVDSSDKDDFSFAQKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKME 155 Query: 174 ----SSGSVWFNFYEPESNRVVHDFAVEVGTF---QAMTYTYKQSNSGGLNSSNSIIHED 226 +G V EP S + F +++ + T S+SGGL S+ Sbjct: 156 GVLIPAGFVKVTILEPMSGESLDSFTMDLSELDIQEKFLKTTHSSHSGGLVSTMV----K 211 Query: 227 LEKNKEDAIHKILNRMYAVVMKKAVTELTEENIAKYREAIDRMKG 271 N DAI LN+++A +M++ +LT++N+ Y++ +KG Sbjct: 212 GTDNSNDAIKSALNKIFANIMQEIDKKLTQKNLESYQKDAKELKG 256
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 40.9 bits (96), Expect = 8e-06 Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 13/181 (7%) Query: 211 AASIATLSNDERELGVACVDIGGETCNLTIYSGNSIRYNKYLPIGSHHLSTDLSSMLNTP 270 AA+I G VDIGG T + + S N + Y+ + IG + + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 271 F------PYAEEVKIKYGDLSFESGEETPSQSVQIPTTGSDGNESHVVPLSKIQNIMRDR 324 + AE +K + G S G+E V+ + ++I +++ Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFQIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELAKAHFTNYPVRLAA-PM 380 + +++ E + G+VLTGG AL++ + L T PV +A P+ Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL-MEETGIPVVVAEDPL 322 Query: 381 E 381 Sbjct: 323 T 323
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.1 bits (75), Expect = 0.001 Identities = 25/145 (17%), Positives = 48/145 (33%) Query: 27 GATKKELKQLQVNSKNFSNILTKIHSQVEANTQAQEGLRSVYEGQANKIKDLNNAILSQE 86 K + ++ +A EG + + KIK L + E Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 87 ESLRALKALQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLV 146 L+ E N S ++ L E A + L+ Q++ ++ L +DL Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Query: 147 SQIALIQKALKEQEEKAEKPLKSNA 171 + ++ E ++ E+ S A Sbjct: 320 ASREAKKQLEAEHQKLEEQNKISEA 344
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 141 bits (358), Expect = 1e-43 Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 22/168 (13%) Query: 22 NMNKETVAGDVSAKAVQSAPVSTETVQEKQEPKQEPAPVVEKKPAIESGTIIASIYFDFD 81 + ++ VS + Q P PAP V+ K T+ + + F+F+ Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVV------APAPAPAPEVQTK----HFTLKSDVLFNFN 226 Query: 82 KYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALI 138 K +K Q LD++ + V++ G TD GS YNQ L +R SV + LI Sbjct: 227 KATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLI 286 Query: 139 IKGVEKDMIKTISFGETKPKCTQKT---------KECYKENRRVDVKL 177 KG+ D I GE+ P +C +RRV++++ Sbjct: 287 SKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 32.8 bits (74), Expect = 0.002 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 11/142 (7%) Query: 32 EEAEKILLDLGKKNEQVID--LNLEDLPSDEKKEEKVEE-KKEEKVVEKNATDKEGDFID 88 +EA K++ D N++++ LN +D K +E KK +K +EK+ +E Sbjct: 568 QEANKLIKDFLSSNKELVGKTLNFNKAVADAKNTGNYDEVKKAQKDLEKSLRKREHL--- 624 Query: 89 PKEQEESLENIFSSLNDFQEKTDTNAQKDE----QKNEQEEEQRRLKEQQRLRKNQKN-Q 143 KE E+ LE+ + N + K N+QKDE E + R + Q L+ ++ Sbjct: 625 EKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELS 684 Query: 144 EMLKGLQQNLDQFAQKLESVKN 165 + L+ + +NL F + + KN Sbjct: 685 DKLENVNKNLKDFDKSFDEFKN 706
>PF05844#YopD protein Length = 295 Score = 25.0 bits (54), Expect = 0.035 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 10 SVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 L+A F+ + I++ Q + +V + Q ++E+++ I + + Sbjct: 197 VALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQASAREEEVNATIGQ-SQ 255 Query: 70 KQKSE 74 KQK E Sbjct: 256 KQKVE 260
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.7 bits (225), Expect = 2e-23 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 1 MQK-KIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEM 59 M I + +DD + + + L GY+V N + ++ +L++ DV +P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 NSLELFRRIKNDFLIFTPVIFITALHDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117 N+ +L RIK PV+ ++A + T A GA DYL KPFDL EL I R Sbjct: 61 NAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 30.2 bits (68), Expect = 0.010 Identities = 7/45 (15%), Positives = 16/45 (35%) Query: 122 GSHGEYFRNRASTKNIQFPYSHYLAHICLGILYTRSASSGIDETE 166 GSH Y+ + Q + I + Y+ + ++ + Sbjct: 547 GSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRD 591
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 221 bits (565), Expect = 2e-77 Identities = 64/148 (43%), Positives = 94/148 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAYSCAKNPMFSLKERLEMMQLATKGFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERLE + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 32.4 bits (73), Expect = 0.008 Identities = 72/270 (26%), Positives = 117/270 (43%), Gaps = 33/270 (12%) Query: 545 HLEPGFNPKTL--IESVCSKVLKEFEKVEILDKYGVYQLFKDYYNEVLQDDWFLLSFNDF 602 HLE GFN + + + + + F + + DK L N++++D LS N Sbjct: 527 HLEVGFNKVAIFNLPDLNNLAITSFVRRNLEDKLTTKGLSPQEANKLIKD---FLSSNKE 583 Query: 603 LSTKELRELNPLKDKNKKANYLEEPDFVIQKTYYKSDLIPKNLIKQRFFEKE-AKELEQL 661 L K L + D NY E ++K + DL K+L K+ EKE K+LE Sbjct: 584 LVGKTLNFNKAVADAKNTGNYDE-----VKKA--QKDL-EKSLRKREHLEKEVEKKLESK 635 Query: 662 ENALNEKEADFEEFIEEHSGEEGLFYELKINESVLKKELKNATDLEDKEILKTALELLEA 721 N+ EA + +S ++ +F IN+ + A K I + + LE Sbjct: 636 SGNKNKMEAK----AQANSQKDEIF--ALINKEANRDARAIAYAQNLKGIKRELSDKLEN 689 Query: 722 KNKALKMKNKAHEELE-------LKAFHQYKNLKLGEIKDLIIQDKWLKSLKNALENKIL 774 NK LK +K+ +E + KA K LK G +KDL I +W+ ++N + Sbjct: 690 VNKNLKDFDKSFDEFKNGKNKDFSKAEETLKALK-GSVKDLGINPEWISKVEN-----LN 743 Query: 775 KRINAFTSALNKIISNYSNSLLELDKEVKE 804 +N F + NK S + + +L+ VK+ Sbjct: 744 AALNEFKNGKNKDFSKVTQAKSDLENSVKD 773
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 111 bits (280), Expect = 9e-29 Identities = 77/401 (19%), Positives = 152/401 (37%), Gaps = 29/401 (7%) Query: 54 KKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRILEITGAKDLAYKSENFILRLEM 113 K P + + N N I + L + ++ ++ +N + L + Sbjct: 170 KLNPFDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTL----SSEICFRLKNNSIDLSL 225 Query: 114 IPKKANLMILDKEKCVIEA--FRFNDRVAKNDILGALPLN-TYEHQERDLDFKGLLDILE 170 K + + I++ F FN N +G LN + + + + +LE Sbjct: 226 SNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLE 285 Query: 171 KDFLSYQHKE-LERKKNHIIKRLNMQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTY 229 + + + L+ K + + K + R +K + L + + + LL Sbjct: 286 NFYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTAN 345 Query: 230 QHLINKHESRVVLKDFED---KECAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEE 286 + + K S + L ++ I +D++ + + + K K+ + + Sbjct: 346 IYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLL 405 Query: 287 NLKEKIAFKENQINYVKGAQEESVLE------------MFMPVKNSKIKRPMSGYEVLYY 334 +E++ + + + + A +E F + SK + + Sbjct: 406 QNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISK 465 Query: 335 KDFKIGLGKNQKENIKL-LQDARANDLWMHVRDIPGSHLIVFCQKNTPKDEIIMELAKML 393 I +GKN +N L L+ A +D+W H ++IPGSH+IV + P + ++E A + Sbjct: 466 DGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIP-ESTLLEAANLA 524 Query: 394 IKMQKDAFNS-YEIDYTQRKFVKIIKGAN---VIYSKYRTI 430 K +S +DYT+ K VK GA VIYS +TI Sbjct: 525 AYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 34.8 bits (80), Expect = 6e-04 Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 5/92 (5%) Query: 46 NAPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRI--LEITGAKDLAYK 103 N P I L+ + +K + L K+ NAKI+ + I+ DRI ++ +L + Sbjct: 55 NYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFN 113 Query: 104 SENFILRLEMIPKKANLMILDK-EKCVIEAFR 134 S + L +E++ + +N+ ++ K + ++++ + Sbjct: 114 SI-YSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 131 bits (331), Expect = 8e-40 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 6/203 (2%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIA-LSYLFDT 215 Q+ L + V I +A V + + + K +A + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST--KTDAVATIKYKVDG 199 Query: 216 PDFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 200 TPSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.7 bits (71), Expect = 0.004 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 191 KEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQ--RKWYCLGICSKKSKLSLMPEE 248 KE+ +EE+ I D A+ + Q + ALK + R + K+SK +MP E Sbjct: 365 KEKIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSE 418 Query: 249 IFNDKQFTYFKF 260 IF+D FTYF F Sbjct: 419 IFDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 50.2 bits (120), Expect = 4e-09 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGKNTALYFKKNKPDV-----------ALLTPKKSELC-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSAYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + AY NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYKMVAQVLDYKGAFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>FLAGELLIN#Flagellin signature. Length = 507 Score = 285 bits (731), Expect = 1e-92 Identities = 128/519 (24%), Positives = 219/519 (42%), Gaps = 18/519 (3%) Query: 2 SFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANL 61 + INTN +L + ++ LSS++E+LSSGLRIN A DD++G AIA+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLE 121 QA RNAND I + QT + A++E L ++ +VQA + +++Q +IQ+ LE Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFSG 181 E+D ++N T FNG ++LS + Q+GA T+ + +G + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVN---- 175 Query: 182 EGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVR 241 + ++ +FK V G + Y + + +G + + V Sbjct: 176 -----GPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVN 230 Query: 242 ASYNVMATG----GTPVQSGTVRDLTINGVEIGTVNDVHKNDADGRLINAINSVKDRTGV 297 A+ + T T V T E + K +G + V Sbjct: 231 AANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFD-YKGVTFTIDT 289 Query: 298 EASLDIQGRINLHSIDGRAISVHATSASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARD 357 + D G+++ +I+G +++ + S D + Sbjct: 290 KTGNDGNGKVST-TINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 358 IIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAG 417 S ++ +G ++ TVN + + AG + + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 418 --VTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRD 475 + K + DSA +++D +RS +G++Q + I N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 476 VDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514 D+A E +N SK IL Q+G+ +AQAN V QNVL LL+ Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.003 Identities = 31/228 (13%), Positives = 74/228 (32%), Gaps = 9/228 (3%) Query: 98 QSKKEVAEAQKEAESARDRANKSGIELEQEKQKTSNIETSNQIKVEQEKQKTSNIETSNQ 157 Q+++ EA+ ++ + E ++ +T+ + + ++ ++EK K +T Sbjct: 1064 QNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE-KEEKAKVETEKTQEV 1122 Query: 158 IK-TEQEKQKTSNIETSN-QIKTEQERQKVEQEKQKTSKSGIELEQERQKTIKAQKDFIK 215 K T Q K ET Q + +E K+ S++ + E Q + + + Sbjct: 1123 PKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE-QPAKETSSNVEQ 1181 Query: 216 DLEQNCKENHGQFFIEKGGIKDSIAIEVEAECKTPKTTKTN-----QTPIQPKHLPNSKQ 270 + ++ N G +E + ++ K ++ + Sbjct: 1182 PVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSS 1241 Query: 271 PHSQRGSKAQELIAYLQKELESLPYSQKAIAKQVNFYRPSFIAYLELD 318 + L + +A V I+ LE++ Sbjct: 1242 NDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMN 1289
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.024 Identities = 29/172 (16%), Positives = 67/172 (38%), Gaps = 12/172 (6%) Query: 92 ELEQEKQKTEQEKQKTEQEKQKTSNIETSNQIKVEQEKQKTNKSGIELEQERQKTIKKQK 151 E ++ ++EK K E EK + TS Q+ +QE+ +T + E +E T+ Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTS-QVSPKQEQSETVQPQAEPARENDPTV---- 1153 Query: 152 DFIKDLEQNCKENHGQFFIEKGGIKDSIAIEVEAECKTPKTTKTNQTPIQPKHLPNSEQP 211 ++++ + + E+ + S +E T N P++ + Sbjct: 1154 ----NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT-VNTGNSVVENPENTTPATTQ 1208 Query: 212 HSQRGSKAQELIAYLQKELESLPYSQKAIAKQVNFYRPSSIAYLELDPRDFN 263 + + + ++ + S+P++ + N S++A +L + N Sbjct: 1209 PTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSN--DRSTVALCDLTSTNTN 1258
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 294 bits (753), Expect = 7e-92 Identities = 105/441 (23%), Positives = 185/441 (41%), Gaps = 67/441 (15%) Query: 388 DLEHMNSFKEGEILVTDN-TDPDWEPCMKK-ASAVITNRGGRTCHAAIVAREIGVPAIVG 445 + + + E +++ ++ T D K+ T+ GGRT H+AI++R + +PA+VG Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 446 VSGATDSLYTGMEITVSCAEGE---------EGYVYAGIYEHEIERVELSNMQETQT--- 493 T+ + G + V EG E ++ E + + + Sbjct: 206 TKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTK 265 Query: 494 -----KIYINIGNPEKAFGFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEK 548 ++ NIG P+ G G+GL R E + +++ + P Sbjct: 266 DGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQ-LPTE------------- 311 Query: 549 NEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEP 608 E Y K++ + KPV++RT D ++ + L P Sbjct: 312 ---EEQFEAY--------KEVVQ-------RMDGKPVVIRTLDIGGDKELSYL----QLP 349 Query: 609 NEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVL 668 E NP LG+R + F + AL N+KVM P + T+EE ++ Sbjct: 350 KELNPFLGFRAIRLCLE--KQDIFRTQLRALL---RASTYGNLKVMFPMIATLEELRQAK 404 Query: 669 EILRKNNLESGKNG------LEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGV 722 I+++ + G +E+ IM E+P + A+ F D FSIG+NDL Q T+ Sbjct: 405 AIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAA 464 Query: 723 DRDSELVSHVFDERNGAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITS 782 DR +E VS+++ + A+L++ I+A K+ G+CG+ D L+ G+ Sbjct: 465 DRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-EVAIPLLLGLGLDE 523 Query: 783 ISLNPDSVIPTWNAVAKLEKE 803 S++ S++P + + KL KE Sbjct: 524 FSMSATSILPARSQLLKLSKE 544
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 148 bits (376), Expect = 5e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKTLSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.015 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 358 bits (920), Expect = e-125 Identities = 118/345 (34%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDVQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++DV +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMVLSLKSPNFKNAIQ 186 A+ SA + NGA IERE+ +VL L++P+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIMVHPIVVTSQDITLKITKEPLDN--------SKNAQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.027 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.006 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEAF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 350 bits (900), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDISKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 30.2 bits (68), Expect = 0.010 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEA 102 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEK 223
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 37.1 bits (85), Expect = 4e-05 Identities = 46/212 (21%), Positives = 95/212 (44%), Gaps = 17/212 (8%) Query: 43 PNPEEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKI 101 P E + E +I+ + L L +LQMQ A E+ +A I + G+K Sbjct: 17 PPQAEFVPIVEPEETIIE---EAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQ 70 Query: 102 GFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALE----KELSAIAIDI 157 G++EG + L + E K+Q + + + + + L AL+ L +A++ Sbjct: 71 GYQEG---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEA 127 Query: 158 AKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---K 214 A++VI + ++ + + + L + L + L+V+P D +++ L + + Sbjct: 128 ARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWR 187 Query: 215 LESNEAISKGGVMITSSNGSLDGNLMERFKTL 246 L + + GG +++ G LD ++ R++ L Sbjct: 188 LRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 142 bits (359), Expect = 5e-38 Identities = 99/437 (22%), Positives = 174/437 (39%), Gaps = 85/437 (19%) Query: 9 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 65 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 66 RLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANVYIAL 125 + E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 SFQW----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 126 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSNANEVSAKARLGIKD--------- 176 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 177 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 204 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 205 F--------------------DNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYY 244 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 245 PNPLKKIPTKNLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 301 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 302 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 361 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 362 EREFGLNLIATAPTVVY 378 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 405 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 464 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 465 LKSCTKGYASFDYEP 479 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.009 Identities = 9/40 (22%), Positives = 17/40 (42%) Query: 3 NGYYAATGAMVAQFNRLDLTSNNLANLNTNGFKRDDAVTG 42 + A + A L+ SNN+++ N G+ R + Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.0 bits (96), Expect = 8e-06 Identities = 59/315 (18%), Positives = 104/315 (33%), Gaps = 67/315 (21%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYITLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS I +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSQTTSKTTIKEETQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 263 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 264 LKIFLTNSSSFSPK-------ESSFIMLLALSYFIFLQPLCG---MLADKIKRTQMLMVF 313 IF+ + + ++ M+ L I + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 314 AIAGLIVTPVVFYGI 328 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.5 bits (76), Expect = 0.005 Identities = 48/234 (20%), Positives = 78/234 (33%), Gaps = 44/234 (18%) Query: 179 APSDIQKKETK---NDKEKENLKENPI-DENHKTPNEESLLAIPTPYNTTLNALEPQEGL 234 P++IQ N++E + E P+ TP+E + + +E E Sbjct: 999 TPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQES-KTVEKNE-- 1055 Query: 235 VQISSNPPTHYTIYPKKNRFDDLSNPTNPTLKEVKQETKEREPTLKKET----------- 283 Q ++ K+ + + +N + + ETKE + T KET Sbjct: 1056 -QDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV 1114 Query: 284 --------------LTPATLKP--IMPASAPNTENDNKTENHKAPNHPTKEENVQENAQE 327 ++P + + P + P END T N K P T E + Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND-PTVNIKEPQSQTNTTADTEQPAK 1173 Query: 328 EMIKENIKEMIEERIKENIKEEEKEAQNAPSFNPITPTSAKKPVMVKELSENKE 381 E N+++ + E N N+ NP T A V S NK Sbjct: 1174 E-TSSNVEQPVTESTTVN-------TGNSVVENPENTTPATTQPTVNSESSNKP 1219
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 28.1 bits (62), Expect = 0.004 Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 2 KIKAIMLGLVMSGGLLLANGEQDAYNFKAMEKEIKEITKMIITTGEAVKMNEKQFDQLNA 61 K+ +L L+ GG +LAN NF EKE K+ I A+K + + + Sbjct: 5 KLGVRLLSLLALGGFVLANPVFADQNFARNEKEAKDSAITFIQKSAAIKAGARSAEDIKL 64 Query: 62 D 62 D Sbjct: 65 D 65
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 32.0 bits (73), Expect = 0.008 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 14/124 (11%) Query: 86 LAVVFTLF-----VVYLSMGAMLSPSLLPESLLTIDNHSNFLNACLQL-IGALIVMHLGR 139 L V + V + + ++ + + + + G +VM LG Sbjct: 120 LTVALAILQGTGLVATARSAPLFGRCSVGGQIVPDQSIFTTITMVICMTAGTCVVMWLGE 179 Query: 140 DFYIQGFKALWHRQPNMSSLIAIGTSAALISSLWPLYLVYTNQWSYGHYYFESVCVILMF 199 +G MS L+ I +A S+LW + + G F +V + + Sbjct: 180 LITDRGIGN------GMSILMFISIAATFPSALWAIK--KQGTLAGGWIEFGTVIAVGLI 231 Query: 200 VMVG 203 ++ Sbjct: 232 MVAL 235
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.4 bits (79), Expect = 0.001 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 28/131 (21%) Query: 157 KKLINAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGK 216 ++ E + + G A +E+ ++ R +++ G GTGK Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLA------RLMQTDLT----LMITGESGTGK 173 Query: 217 TLLAKAV---AGEAHVPFFSMGGSSF------IEMF-----VGLGASRVRD-LFETAKKQ 261 L+A+A+ + PF ++ ++ E+F GA FE A+ Sbjct: 174 ELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGG 233 Query: 262 APSIIFIDEID 272 +F+DEI Sbjct: 234 T---LFLDEIG 241
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.0 bits (213), Expect = 5e-23 Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Query: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLNANADTKVLITDWNMPEMNG 61 +LV DD + +R ++ LSR GY DV + W + A D +++TD MP+ N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWI-AAGDGDLVVTDVVMPDENA 62 Query: 62 LDLVIKVRADERFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQ 110 DL+ +++ + ++P+++++ + I A + G +Y+ KPF Sbjct: 63 FDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 30.1 bits (67), Expect = 0.008 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 7/111 (6%) Query: 32 KIKRKLNHFIGNILARTEVYKKLVAKYDELTGKYDDLTGKYDDLTGKYDDL---TGKYDD 88 ++ ++ +G T++Y+ + K D YD T K K L Y Sbjct: 124 QVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQ 183 Query: 89 ----LTGKYDDLTGKYESLLAKEANIKETFWERRADSEKEALFLEHFYLTS 135 + + T E+L + + +A +EK L F T+ Sbjct: 184 AEAAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGTA 234
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 28.5 bits (63), Expect = 0.017 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Query: 60 GELVPLEIVVETILSAIKSSDKGIILIDGYPRSVEQMQALDKELSAQNEVVL 111 G+L+ I VE LS I + D L+ P++ E++ ALDKEL A+ + L Sbjct: 127 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.8 bits (132), Expect = 2e-10 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADSRTEHIPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK +PV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 28.9 bits (64), Expect = 0.003 Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVSSERKSSFSISLSPS 48 R KL ELAEL AE+K+ S ++ + LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 278 bits (713), Expect = 7e-78 Identities = 106/394 (26%), Positives = 181/394 (45%), Gaps = 14/394 (3%) Query: 2796 NAVNWLNALFVAKGGNPLFAPYYLQDTPTEHIVTLMKDITGALGMLAKPNLKNNSTDVLQ 2855 + L L + + +A + T I + T L +A K + L Sbjct: 907 QGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLS 965 Query: 2856 LNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKLKNN 2915 L+ RL LS + F++RL +LK+QRFA + +A +V+ +++ + + N Sbjct: 966 LSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEKPTN 1024 Query: 2916 LWATGVGGVSFVENGTGTLYGVNVGYDRFVKG---VIVGGYAAYGYSGFYER--ITSSKS 2970 +WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + +S + Sbjct: 1025 VWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGA 1084 Query: 2971 DNVDVGLYARAFIKKSELTFSVNETWGANKTQISSNDALLSMINQSYQYNTWTTNARVNY 3030 +N + G+Y+R F + E F G++++ ++ ALL +NQSY Y ++ R +Y Sbjct: 1085 NNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASY 1144 Query: 3031 GYDFMFKNKSIILKPQIGLRYYYIGMTGLEGVMNNALYNQFKANADPSKKSVLTIDFAFE 3090 GYDF F +++LKP +G+ Y ++G T + + S + + E Sbjct: 1145 GYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASANVE 1200 Query: 3091 NRHYFNKNSYFYAIGGIGRDLLVRSMGDKLVRFIGDNTLSYRKGELYNTFASITTGGEVR 3150 R+Y+ SYFY G+ ++ + V + R NT A + GGE++ Sbjct: 1201 ARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGGELK 1257 Query: 3151 LFKSFYANAGVGARFGLDYKMINIIGNIGMRLAF 3184 L K + N G L + + N+GMR +F Sbjct: 1258 LAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 896 bits (2316), Expect = 0.0 Identities = 286/1040 (27%), Positives = 518/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDMPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-SYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESYYTRLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F ++YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKIGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + ++ F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTAQNPFKAKIFVQLKPLKERKKERKLGQFELMSALRKELKS 631 + + E FT + G AQN FV LKP +ER + ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENS-AEAVIHRAKMELGK 656 Query: 632 MPEAKGLESINLSEVSLIGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKQDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + + + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.1 bits (130), Expect = 9e-11 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 27 NVKAVQDSKLTLDSTGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQ 86 K ++ IV I V EG V+KGDVLL L +A + T+ L+ A+ + Sbjct: 95 RSKEIKPI-----ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149 Query: 87 YQRYSKIGGAVDRNTLESYEFN 108 RY + +++ N L + Sbjct: 150 QTRYQILSRSIELNKLPELKLP 171 Score = 32.1 bits (73), Expect = 0.002 Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDRNTLESYEFNYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANSTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV + L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.016 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 16/113 (14%) Query: 203 LARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDL-----QSLKAQGNLSEY--DILDIQ 255 LAR+ + K+ + + L K + + ++A L Y + I+ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 256 FALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQD-LVSLREQISALKYQ 307 + + + +T K +D +LR+ D + L +++ + + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.011 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVT 119 L + + +A+ E + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>FLAGELLIN#Flagellin signature. Length = 507 Score = 244 bits (624), Expect = 6e-77 Identities = 127/518 (24%), Positives = 210/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQANSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKISSSAGTGIGVLAEVINKNSNQTGVRAYANVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQNGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SLDGRGIEIKTDSTSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K +T NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFSAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVLASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 AGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.0 bits (64), Expect = 0.014 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 11/112 (9%) Query: 27 NQTTELHHKNPYELLVATILSAQCTDARVNKITPKLFEKYPSVKDLAL-----ASLEGVK 81 N+ E+ K E A ++ + T +I + K P+ K+L L A +E VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 82 ETIKSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 133 ET+ + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 49.6 bits (118), Expect = 4e-09 Identities = 24/57 (42%), Positives = 28/57 (49%) Query: 83 APKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 139 P P +P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 45.4 bits (107), Expect = 9e-08 Identities = 38/228 (16%), Positives = 69/228 (30%), Gaps = 53/228 (23%) Query: 84 PKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEE 143 P + P +P P P P P P E P KPKPKP+PK K V+KV+E Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVKKVQE 108 Query: 144 KKVVEEKKEEKKIVEQKVEQKKVEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQT 203 + + K E + ++ + + + Sbjct: 109 QPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ------ 162 Query: 204 RRDIDELYGEEFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLH 263 YP A L +G V+F + Sbjct: 163 ---------------------------------------YPARAQALRIEGQVKVKFDVT 183 Query: 264 PNGDITDLKIIIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 311 P+G + +++I+ M + ++ + +P + ++ I + Sbjct: 184 PDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 39.6 bits (92), Expect = 8e-06 Identities = 16/54 (29%), Positives = 22/54 (40%) Query: 74 QDPSKNTPGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKK 127 Q +P P P P+ PKP KPKP+P K + +PK+ Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 38.8 bits (90), Expect = 1e-05 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 87 TLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKV 146 T+ P P PP P E P+PEP P+P E K K K + KKV Sbjct: 48 TMVTPADLEPPQAVQPPPEPVVEPE-PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 106 Query: 147 VEEKKEEKKIVE 158 E+ K + K VE Sbjct: 107 QEQPKRDVKPVE 118 Score = 33.8 bits (77), Expect = 6e-04 Identities = 14/56 (25%), Positives = 22/56 (39%) Query: 74 QDPSKNTPGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPN 129 +P P+P P++ P P P PKP K + +PK +P + Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Score = 31.1 bits (70), Expect = 0.004 Identities = 12/52 (23%), Positives = 16/52 (30%) Query: 75 DPSKNTPGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPK 126 +P P + P P P P K E+PK + KP Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 123
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.9 bits (70), Expect = 0.002 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLIDILGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGVIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 27.0 bits (60), Expect = 0.019 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 9/68 (13%) Query: 27 NLADKRYDSLGLIGAGVLCCVLSGAIGIVGII--FVAIGIFLS-------FSNINLVKLV 77 + A L+ LC L ++ I V G +S IN ++ Sbjct: 69 SQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGA 128 Query: 78 EKLFKKQS 85 +++F +S Sbjct: 129 KRIFSIKS 136
>PF03944#delta endotoxin Length = 633 Score = 33.1 bits (75), Expect = 0.001 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 VHKQVLQKLQEYQQYASQFLALVPLSAKKSQNLN 161 + + L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.045 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 51 TPKNILMIGSTGVGKTEIARRI---AKIMKLPFVKV 83 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF07520#Virulence protein SrfB Length = 1041 Score = 28.8 bits (64), Expect = 0.016 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 121 LEAEDNKIAAIGSGG---NYALSAARALDNFAHLEPRKLVEESLKIAGD 166 E+ ++A I GG + ++ R DN L P + E ++AGD Sbjct: 590 GESPSLRLACIDVGGGTTDLMVTTYRGEDNRV-LHPEQTFREGFRVAGD 637
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 807 bits (2085), Expect = 0.0 Identities = 225/1062 (21%), Positives = 451/1062 (42%), Gaps = 73/1062 (6%) Query: 5 IIDLSVKNKLLTTLVTLLIFLASLWAIKSVRLDALPDLSPAQVVVQITYPNQSPKIVQEQ 64 + + ++ + ++ +++ +A AI + + P ++P V V YP + VQ+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTYPLVSTFMSIANIDTVRGIS-SYESGLIYIIFKDGVNLYWARDRVLEQLNRALN-LPK 122 VT + I N+ + S S S I + F+ G + A+ +V +L A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 123 DAKV-EIGSDSTSIGWAYQYALSSDSKNLS--DLKVLQDFYYRYALLGVDGVSEVASVGG 179 + + I + +S + SD+ + D+ + L ++GV +V G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 FVKDYEVTLQNDSLIRYNLSLEQVANAIKNSNNDTGGGVI------LENGFEKIIRSHGY 233 + L D L +Y L+ V N +K N+ G + I + Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 234 IQSLKDLEEIVVK-KEGAIPLKIKDIASVRLAPKPRRGAANLNGDKEVVGGIVMVRYHAD 292 ++ ++ ++ ++ +++KD+A V L + A +NG K G + + A+ Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARING-KPAAGLGIKLATGAN 298 Query: 293 TYKVLKAIKEKIATLQASNP-DVKITSVYDRSELIEKGIDNLIHTLIEESVIVLVIIAIF 351 KAIK K+A LQ P +K+ YD + ++ I ++ TL E ++V +++ +F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 352 LLHFRSALVVIITLPLSVCISFLLMRYFNIEASIMSLGGIAIAIGAMVDAAIVMVENAHK 411 L + R+ L+ I +P+ + +F ++ F + +++ G+ +AIG +VD AIV+VEN + Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 412 HLQHIDVKDNAQRVNAIMQGVKHVGGAIFFALMIIVVSFLPIFALTGQEEKLFAPLAYTK 471 + +D A + + + GA+ M++ F+P+ G ++ + T Sbjct: 419 VMM----EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 472 TFAMLVGALLSITMVPILMVWLIKGRILEESKNPINAFF----------MKIYGVSLNVV 521 AM + L+++ + P L L+K E +N FF + Y S+ + Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENK-GGFFGWFNTTFDHSVNHYTNSVGKI 533 Query: 522 LKFRYAFLIASVVGLGGLYVAYQKLNWEFIPQINEGVVMYMPVTINGVGID-------TA 574 L +L+ + + G+ V + +L F+P+ ++GV + M G + Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593 Query: 575 LEYLKKSNSAIKRLDFVKQVFGKVGRANTSTDAAGLAMIETYIELKPQNEWKEKLSYKEV 634 +Y K+ A F F G+A + A ++ LKP W+E+ + Sbjct: 594 TDYYLKNEKANVESVFTVNGFSFSGQAQNAGMA--------FVSLKP---WEERNGDENS 642 Query: 635 RDKL--EKTLQLKGLTNSWTYPIRGRTDMLLTGIRTPLGIKL-------YGNDTDKLQEL 685 + + ++L + + + P + L G T +L + T +L Sbjct: 643 AEAVIHRAKMELGKIRDGFVIPFNMPAIVEL-GTATGFDFELIDQAGLGHDALTQARNQL 701 Query: 686 AILMEQQLKTLKESLSVFAERSNNGYYITLDLNDENLARYGINKNAVLDTIKFALGGTTL 745 + Q +L +SV + L+++ E G++ + + TI ALGGT + Sbjct: 702 LGMAAQHPASL---VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYV 758 Query: 746 TTMIKGVENYPISLRLEDTERNTIERLQNLYVKTAYNYM-PLRELAHVYYDNSPAVLKSE 804 I + ++ + R E + LYV++A M P ++ L+ Sbjct: 759 NDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERY 818 Query: 805 KGLNVNFIYIVPQANISSDTYRQLAQKALEKIKLPSGYYYEFSGESQYLEEAFKTLQYIV 864 GL I SS L + KLP+G Y+++G S + +V Sbjct: 819 NGLPSMEIQGEAAPGTSSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALV 876 Query: 865 PVSVFIIFILIVFALKNLTNSLLCFFTLPFAFLGGLIFMNIMGFNMSVAALVGFLALLGV 924 +S ++F+ + ++ + + +P +G L+ + V +VG L +G+ Sbjct: 877 AISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGL 936 Query: 925 ASETAIVMIIYLEDAFQKFIKTPLKEQNSTALKEAIMHGAVLRVRPKLMTFFSILASLIP 984 +++ AI+++ + +D L E+ + EA + +R+RP LMT + + ++P Sbjct: 937 SAKNAILIVEFAKD---------LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLP 987 Query: 985 IMYSHGTGSEIMKSIAAPMLGGMISSVVLTLFIIPTAYFVIK 1026 + S+G GS ++ ++GGM+S+ +L +F +P + VI+ Sbjct: 988 LAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIR 1029
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 27.9 bits (62), Expect = 0.035 Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 6/88 (6%) Query: 144 FGSLVGSLVGTHFSFD---TQGMEFVMTAIFIVLFMEQYKRNTNHKN--AWLGIFIAVVC 198 G +G ++ + + M ++T F++ +++ R H + + + + +V Sbjct: 154 VGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 199 LALFGTEYFLLIALVLMVLALILFKKQL 226 LF T Y + L++ VL+ ++F K + Sbjct: 214 FMLFTTSYSISF-LIVSVLSFLIFVKHI 240
>cloacin#Cloacin signature. Length = 551 Score = 32.8 bits (74), Expect = 0.003 Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 9/99 (9%) Query: 28 AKLSRSNEQLSDMLYKLNESLRIYQSVLSNNQDQL----KEIKKANSTLNSQRRFFNASQ 83 ++L +N+ L+D + ++ + R ++ + ++A + +N+++ F+A+ Sbjct: 356 SELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAA 415 Query: 84 IRLMDTDALLKQSALELEKLQALEKRLKEGMEQERLIEE 122 D DA L SA+E K +K K+ + L +E Sbjct: 416 KEKSDADAAL-SSAMESRK----KKEDKKRSAENNLNDE 449
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 47.1 bits (112), Expect = 3e-09 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 11 ALYGGSFDPLHKAHLAIIDQTLELLPFAKLIVLPAYQNPFKKPCFLDAQTRFKELERALK 70 A+Y GSFDP+ HL II++ L F ++ V +NP K+P F Q R +++ +A+ Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRL--FDQVYVAVL-RNPNKQPMF-SVQERLEQIAKAIA 58 Query: 71 GMDRVLLSDFE 81 + + FE Sbjct: 59 HLPNAQVDSFE 69
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.013 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 35.7 bits (82), Expect = 2e-04 Identities = 30/183 (16%), Positives = 78/183 (42%), Gaps = 10/183 (5%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQATVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 219 + A A+ ++ + +K R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 220 N-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWVSPLTPEDVLNNPKFATIKAIKNKQVY 277 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 278 KLP 280 ++P Sbjct: 268 RVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 34.5 bits (79), Expect = 5e-04 Identities = 31/183 (16%), Positives = 74/183 (40%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQALDSDILEKGGID 217 + A LA+ ++ + +K R K + + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWVSPLSPEDVLNNPKFATIKAIKNKQVY 275 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.030 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217