PredictBias

identification of genomic and pathogenicity islands in prokaryotic genome
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A) Input parameters
Genome393.gbkThreshold dinucleotide bias2
Threshold codon bias4Threshold %GC bias3
E-value (RPSBlast)0.05Genome (non-pathogenic)
 
B) Compare a potential GI or PAI in related non-pathogenic sp. (phylogenetic tree)
Potential GI or PAI start    end  
Select Organism     
 
C) Potential GIs and PAIs in NC_009504 (download)
S.NoStartEndBiasVirulenceInsertion elementsPrediction
1BOV_A0025BOV_A0041Y        Y        YPathogenicity Island (biased-composition)
2BOV_A0052BOV_A0059Y        Y        NPathogenicity Island (biased-composition)
3BOV_A0078BOV_A0083Y        Y        NPathogenicity Island (biased-composition)
4BOV_A0145BOV_A0152Y        Y        NPathogenicity Island (biased-composition)
5BOV_A0171BOV_A0177Y        NNGenomic Island
6BOV_A0218BOV_A0226Y        Y        NPathogenicity Island (biased-composition)
7BOV_A0288BOV_A0293Y        NNGenomic Island
8BOV_A0466BOV_A0522Y        Y        YPathogenicity Island (biased-composition)
9BOV_A0576BOV_A0585Y        Y        YPathogenicity Island (biased-composition)
10BOV_A0752BOV_A0758Y        NNGenomic Island
11BOV_A0781BOV_A0790Y        Y        YPathogenicity Island (biased-composition)
12BOV_A1004BOV_A1015Y        NYGenomic Island
13BOV_A1047BOV_A1053Y        Y        NPathogenicity Island (biased-composition)
14BOV_A0007BOV_A0011N        Y        NPathogenicity Island (unbiased-composition)
15BOV_A0053BOV_A0063N        Y        NPathogenicity Island (unbiased-composition)
16BOV_A0107BOV_A0119N        Y        NPathogenicity Island (unbiased-composition)
17BOV_A0136BOV_A0144N        Y        NPathogenicity Island (unbiased-composition)
18BOV_A0359BOV_A0366N        Y        NPathogenicity Island (unbiased-composition)
19BOV_A0401BOV_A0413N        Y        NPathogenicity Island (unbiased-composition)
20BOV_A0857BOV_A0865N        Y        NPathogenicity Island (unbiased-composition)
21BOV_A1034BOV_A1058N        Y        NPathogenicity Island (unbiased-composition)

 
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