>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 116 bits (292), Expect = 9e-34 Identities = 81/250 (32%), Positives = 115/250 (46%), Gaps = 14/250 (5%) Query: 6 ENRTLVLTGANGGIGRAIAELFHASGANLVLTDLDREGLDAFAASLGSPERIA-TIKADA 64 E + +TGA GIG A+A + GA++ D + E L+ +SL + R A AD Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 65 SSADDAEKTVALAMERFGGIDFLVPSAGIYQAKPFAEMSDADWHRTISINLDGVFYLCKR 124 + ++ A G ID LV AG+ + +SD +W T S+N GVF + Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 125 ALPALK--EDSSIVTLASLAAYRGAYVNAHYGATKGAMVSMTRALSRELAP-KTRVNGVA 181 + SIVT+ S A A Y ++K A V T+ L ELA R N V+ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 182 PGIIETPMTSEL----------LKTRMDETMTQTPLKRLGKPSEIASVIAFLCSPAASFV 231 PG ET M L +K ++ T PLK+L KPS+IA + FL S A + Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 232 TGETIQVNGG 241 T + V+GG Sbjct: 247 TMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 117 bits (294), Expect = 5e-34 Identities = 76/250 (30%), Positives = 119/250 (47%), Gaps = 12/250 (4%) Query: 7 KLVLVTGAGRGLGAAISSGAAEQGARVILVDIDGTAAKAQADALTAKGFVAEGHALDVTD 66 K+ +TGA +G+G A++ A QGA + VD + + +L A+ AE DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 67 RDAVAALADDILSRFGGLDVLVNNAGVAGRAAFDQPEAVEVWDRVIGVNLEGAFNVSHAL 126 A+ + I G +D+LVN AGV + E W+ VN G FN S ++ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHS-LSDEEWEATFSVNSTGVFNASRSV 127 Query: 127 VPALKAAK-GNVVHLCSVAGFVSGGSTAGYVVSKGAIRSLTQVMARDLAPHGIRVNAVAP 185 + + G++V + S V S A Y SK A T+ + +LA + IR N V+P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 186 GIMMSEM---------AVAQLNRPGGTDWFMNRVMMKRIGETSEVVDPVVFLASPMASYI 236 G ++M Q+ + G + F + +K++ + S++ D V+FL S A +I Sbjct: 188 GSTETDMQWSLWADENGAEQVIK-GSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 237 TGTILPVDGG 246 T L VDGG Sbjct: 247 TMHNLCVDGG 256
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 107 bits (269), Expect = 2e-29 Identities = 28/123 (22%), Positives = 55/123 (44%) Query: 11 VFIVDDDHSVRLGLVDLFASIGLKALCFASVNEFLKHAREEVPACLILDVRMPGESGTEF 70 + + DDD ++R L + G ++ + ++ DV MP E+ + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 71 HARMKGLDIRLPVIFITGHGDIAMGVKAIKDGAIDFLAKPFRNQDLLDAVQQAIRTDRKR 130 R+K LPV+ ++ +KA + GA D+L KPF +L+ + +A+ ++R Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 131 LRE 133 + Sbjct: 126 PSK 128
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.8 bits (228), Expect = 5e-25 Identities = 34/115 (29%), Positives = 57/115 (49%) Query: 3 RILLAEDDNDMRRFLVKALEKAGYHVTHFDNGASAYERLQEEPFSLLLTDIVMPEMDGIE 62 IL+A+DD +R L +AL +AGY V N A+ + + L++TD+VMP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 LARRATEIDPDLKIMFITGFAAVALNPDSDAPRDAKVLSKPFHLRDLVNEIEKML 117 L R + PDL ++ ++ + L KPF L +L+ I + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 51.5 bits (123), Expect = 2e-10 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 21/144 (14%) Query: 47 FPQEPTAQATMWPARPPKQTVS--------VYFPQDVTVFRPTSAQ-INQLHTLLWPV-P 96 F Q A P + + V F + +P ++QL++ L + P Sbjct: 191 FGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDP 250 Query: 97 KH--INVRGLTDNNCPPPGDTQVARVRALAIYNWLINQGVPASRI-TISYAPVKDYASN- 152 K + V G TD + ++ RA ++ ++LI++G+PA +I N Sbjct: 251 KDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNT 310 Query: 153 -------APLSPGRVLNRRVDIEI 169 A L +RRV+IE+ Sbjct: 311 CDNVKQRAALIDCLAPDRRVEIEV 334
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 39.2 bits (91), Expect = 1e-05 Identities = 26/122 (21%), Positives = 33/122 (27%), Gaps = 1/122 (0%) Query: 33 VLLFLFVVGFIVVLLLLLVFHMRGN-AENNHHSDKTMVQTSTVPMRTFKLPPPPPPAPPE 91 LL + + G +V LL H TMV + + PPP P PE Sbjct: 18 TLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPE 77 Query: 92 PPAPPPAPAMPIAEPAAAALSLPPLPDDTPAKDDVLDKSASALMVVTKSSGDTNAQTTNA 151 P P A P P P K K + +S N Sbjct: 78 PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARP 137 Query: 152 RI 153 Sbjct: 138 TS 139
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 50.9 bits (121), Expect = 2e-09 Identities = 47/197 (23%), Positives = 72/197 (36%), Gaps = 58/197 (29%) Query: 93 SHSNQSIDMAPEPGKWDTNLMVTTDQRMYDFDLRLMPGRNNQRVAYRVQFRYPAAAAAAA 152 S + SI+++P W TNL+V T++ +Y F LR+ N V+ YP ++ Sbjct: 262 SPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRHEVSS 321 Query: 153 V----------AAAQKRVV-QARMNA---------------------------------- 167 V A Q+ ++ Q +N Sbjct: 322 VIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNEQIINKEKIREEKQKIILDQAK 381 Query: 168 -----------RPSPVNWNYTMQVG--TNSASIAPTLAYDDGRFTYLRFPNNRDFPAAFL 214 + +PV NY S I P+ +DDG FTY F N PA F+ Sbjct: 382 ALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIFDDGTFTYFGFKNITLQPAIFV 441 Query: 215 VAEDKSESIVNSHIDPS 231 V D S+ ++ IDP+ Sbjct: 442 VQPDGKLSMTDAAIDPN 458
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 215 bits (550), Expect = 6e-73 Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 7/217 (3%) Query: 23 YDEALNWEAAHVRLIEKSERRAWKIAGAFGTITVLLGIGIAGMLPLKQHVPYLVRVNAQT 82 ++EA +WE + E+S++ AW +AG G + + +A + PLK PY++ V+ T Sbjct: 14 FEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNT 73 Query: 83 GAPDILTSLD-EKSVSYDTVMDKYWLSQYVIARETYDWYTLQKDYETVGMLSSPSEGQSY 141 G I L + +++YD + KY+L+ YV RE + ++ ++ V ++S+ E + Sbjct: 74 GEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRW 133 Query: 142 ASQFQGD--KALDKQYGSNVRTSVTIVSIVPNGKGIGTVRFAKTTKRTNETGDGETTHWI 199 + ++ D ++ + V I + G + V F K + + + T + Sbjct: 134 SRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNS---TKTDAV 190 Query: 200 ATIGYQYVNPSLMSESARLTNPLGFNVTSYRVDPEMG 236 ATI Y+ E R NPLG+ V SYR D E+ Sbjct: 191 ATIKYKVDGTP-SKEVDRFKNPLGYQVESYRADVEVP 226
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 32.0 bits (72), Expect = 0.004 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Query: 305 SGSSGGGGSGSAKAGGESSYSAGGNAMWSPA 335 SGS GGGG G +K+ ESS + A WS A Sbjct: 32 SGSGGGGGKGGSKS--ESSAAIHATAKWSTA 60
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.2 bits (83), Expect = 4e-04 Identities = 41/288 (14%), Positives = 80/288 (27%), Gaps = 32/288 (11%) Query: 269 ADEEEDNGDTAAPATARPARATAPTRQTPAAVPAAPVEQPRETMVAALPARDAP-VPMQA 327 ++ DT T +A P+ + A E P A P+ V + Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044 Query: 328 PRPETGLDAQAAAAETPVAAFNVPVPAHKPQMAPQDAVALAAAEDPAAAARAAVDANTAQ 387 + ++ A A ++A + + A A++ + Q Sbjct: 1045 KQESKTVEKNEQDATETTA--------QNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 388 VADAGMSAALTNGFVPVPSARPHLETDNVQLAAAVIPTARP-------ERPGEHPARGQD 440 + +A + + +ET+ Q V P +P PAR D Sbjct: 1097 TTETKETATVEK------EEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND 1150 Query: 441 AIAALVNSQSDEPAQMAGEMADATGNAVAPQPGKTAAFPLPTQAPRADTKLAMVSRRDEI 500 + QS E ++ QP + + + + Sbjct: 1151 PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST---TVNTGNSVVENPENTTPAT- 1206 Query: 501 GELIAPPEDDYDYDAKPVA--AAAPKQAPAPVQMASAAPTKPAAVASA 546 P + + KP + + P V+ A+ + + VA Sbjct: 1207 ----TQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALC 1250
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.013 Identities = 39/149 (26%), Positives = 49/149 (32%), Gaps = 13/149 (8%) Query: 433 SGVNTYTGGTTLTAGTLAAASDNNLGG------ASGGLTFNGGTLQVMGTSWTSTNWAVS 486 +T TGG LA D G SG LT N Q G + ++ V Sbjct: 355 GKTSTITGGEKSLNVDLADGKDKPNHGKSVTFEGSGTLTLNNNIDQGAGGLFFEGDYEVK 414 Query: 487 LQAGGGTFDIE--DAANNFAVTQGVAGAGG--LTKSGSGTLTLSGANSYTGATTVSAGTL 542 + T+ A VT V L K G GTL + G G+ V GT+ Sbjct: 415 GTSDNTTWKGAGVSVAEGKTVTWKVHNPQYDRLAKIGKGTLIVEGTGDNKGSLKVGDGTV 474 Query: 543 ---TQGAAGGFSTASSRYDVDTDGTLDLG 568 Q G +S V TL L Sbjct: 475 ILKQQTNGSGQHAFASVGIVSGRSTLVLN 503
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.003 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 25 CALFEMAWQRKLPLLLKGPTGCGKT---RFVSHMAARMGLPLSTVSCH---DDLAAADLT 78 + Q L L++ G +G GK R + R P ++ DL ++L Sbjct: 150 YRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELF 209 Query: 79 GRYLLKG---GDTIWMDGRLTRAVRDGGICYLDEIVE 112 G KG G GR +A +GG +LDEI + Sbjct: 210 GHE--KGAFTGAQTRSTGRFEQA--EGGTLFLDEIGD 242
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 202 bits (515), Expect = 8e-65 Identities = 83/337 (24%), Positives = 138/337 (40%), Gaps = 41/337 (12%) Query: 20 VLVAGGAGFLGSHLCERLLNEGHSVICVDNFSTGRIENIRH----LLNFDGFSFIRHDIV 75 LV G AGF+G H+ +RLL GH V+ +DN + +++ LL GF F + D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 76 NTLDLR-------VDEIYNLACPASPPHYQADPVHTMKTNVIGSLNLLELAAHYK-ARIF 127 + + + ++ + + +P +N+ G LN+LE H K + Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLL 122 Query: 128 QASTSEVYGDPHVHPQPENYWGNVNSFGPRSCYDEGKRSAETLFHDFHQQYGVDIRIVRI 187 AS+S VYG P + +V+ P S Y K++ E + H + YG+ +R Sbjct: 123 YASSSSVYGLNRKMPFSTD--DSVDH--PVSLYAATKKANELMAHTYSHLYGLPATGLRF 178 Query: 188 FNTYGPRMRPDDGRVVSNFIVQALKGEDITVYGDGSQTRSFCYVDDLIEGFHRLM----- 242 F YGP RPD + F L+G+ I VY G R F Y+DD+ E RL Sbjct: 179 FTVYGPWGRPD--MALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPH 236 Query: 243 ---------------YSPHAIRVPVNIGNPGEFTVGALAEQIIAMTGSRSRIVYYPLPVD 287 +P+ + NIGN + + + G ++ PL Sbjct: 237 ADTQWTVETGTPAASIAPYRV---YNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPG 293 Query: 288 DPRQRRPDITVAKRELGWEPTVALAQGLEPTIAYFEH 324 D + D +G+ P + G++ + ++ Sbjct: 294 DVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 150 bits (381), Expect = 5e-45 Identities = 76/326 (23%), Positives = 131/326 (40%), Gaps = 42/326 (12%) Query: 5 NVLVVGGAGFIGSHTAKLLAGQGYAPVVYDNLSTGHQSAVRWG----------DFVEGDI 54 LV G AGFIG H +K L G+ V DNL+ + +++ F + D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 55 LDQARLVETMEKYVPVAVIHFAASAYVGESVEDPAKYYRNNVGGTQSLLDACRLTRTQNV 114 D+ + + V V S+E+P Y +N+ G ++L+ CR + Q++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 115 IFSSSCATYGVPSRLPIGE-GEAQNPINPYGRTKLIAEHMLADYAVAYGLRYVALRYFNA 173 +++SS + YG+ ++P +P++ Y TK E M Y+ YGL LR+F Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFT- 180 Query: 174 SGADIDGELGEKHDPETHLIPRAMMAAAGRLDVLEVYGDDYETPDGTCIRDYIHVTDLAR 233 + G G + D +AM+ ++VY G RD+ ++ D+A Sbjct: 181 ----VYGPWG-RPDMALFKFTKAMLEG----KSIDVYN------YGKMKRDFTYIDDIAE 225 Query: 234 AHVLAVEHLKEAGGNLAV---------------NLGTGRGTSIREIVQSIGRLTGRSVPV 278 A + + + A V N+G + + +Q++ G Sbjct: 226 AIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKK 285 Query: 279 AMRARRAGDPPALYADPALAAEKLGF 304 M + GD AD E +GF Sbjct: 286 NMLPLQPGDVLETSADTKALYEVIGF 311
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 28.9 bits (64), Expect = 0.026 Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 226 LEVGRDTTFVERTKPGYDRVARFNKPIAIAELGYEGDDDYVRAWVAEANKPHAEFPAM 283 E+G T V R YD + A L YEG D Y RA V P P M Sbjct: 319 DELGEADTLVSRLLLEYDENPILTQLCAARTLAYEG-DGYRRAPVNNMMPPPPPPPMM 375
>SECA#SecA protein signature. Length = 901 Score = 34.5 bits (79), Expect = 2e-04 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%) Query: 3 PHPSLSAPKIRPDLIRPVETMGPYDSCWCRSGKKYKWCHFRRE 45 + +A + + G D C C SGKKYK CH R + Sbjct: 863 DSAAAAALAAQTGERKV----GRNDPCPCGSGKKYKQCHGRLQ 901
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.1 bits (156), Expect = 3e-15 Identities = 20/119 (16%), Positives = 50/119 (42%), Gaps = 5/119 (4%) Query: 12 MTK-SVMIVEDNELNMKLFRDLIEASGYETIRTRSGLEALDLAREHHPDLILMDIQLPEV 70 MT ++++ +D+ + + +GY+ T + DL++ D+ +P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 71 SGLEVTKWLKDDEELRHIPVIAVTAFAMKGDE-ERIRQGGCEAYISKPISVPRFIETIK 128 + ++ +K + +PV+ ++A + +G + Y+ KP + I I Sbjct: 61 NAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYD-YLPKPFDLTELIGIIG 116
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 30.2 bits (68), Expect = 0.017 Identities = 11/43 (25%), Positives = 19/43 (44%) Query: 6 LATTRIIEVNMAKLTRTELENHLWKSADILRGSIDSSDYKIYI 48 + T ++ A+LT T L L + S+D Y+ +I Sbjct: 52 MRTLSLMHETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFI 94
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 34.4 bits (78), Expect = 7e-04 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 15/129 (11%) Query: 257 KTLQIRLDPVELGTVTARIRVAGDSVEAHLVADKSHAAEMLAADRSMIEKALKVAGVGDD 316 ++ ++RL P +LG V ++V + + +V+ H L A ++ L +G+ Sbjct: 257 QSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGI--- 313 Query: 317 TKISVTVADRNAQGAAQHVAAAQNAGQQQASAQQQGHQLAFNMQQQGSQGRGGEAQAQFM 376 Q +++ +GQQQA++QQQ Q N + + + Sbjct: 314 ------------QLGQSNISGESFSGQQQAASQQQQSQRTANHEPLAGEDDDTLPVPVSL 361 Query: 377 SGRSGGEGG 385 GR G G Sbjct: 362 QGRVTGNSG 370
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 538 bits (1386), Expect = 0.0 Identities = 159/576 (27%), Positives = 252/576 (43%), Gaps = 76/576 (13%) Query: 9 LGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNRMGLALGEAGIP 68 L +L A I L + G+A + ++ ++ P Y TL+ LS D + L + IP Sbjct: 16 LNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIP 75 Query: 69 FDVKSDGSSILVPIGKAENARMYLAEKGLPTSNNAGYELFDNMGSLGLTSFMQEITRVRA 128 + + +I VP K R+ LA++GLP G+EL D G++ F +++ RA Sbjct: 76 YRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQE-KFGISQFSEQVNYQRA 134 Query: 129 LEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAESAQ--SIR 186 LEGE+ARTI+ + VK+ARVH+ + + F R + PSASV + E G + + Q ++ Sbjct: 135 LEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVV 194 Query: 187 QLVAAAVPSLDASSVTVLDTNGHLLA---SAGEGANGAALMTASLEQQVASHVDDSIRKA 243 LV++AV L +VT++D +GHLL ++G N A L A+ V S + I Sbjct: 195 HLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFAN---DVESRIQRRIEAI 251 Query: 244 LAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNRNDNATGV 303 L+P +G G+ V A LD ++ E Y P ++ R+ S GV Sbjct: 252 LSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGV 311 Query: 304 -------------------------EQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSK 338 QN PQ N S+ ++ +R E +NYEV+ Sbjct: 312 PGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTST-NSNSAGPRSTQRNETSNYEVDRT 370 Query: 339 TVSTVSDGYSIKRLSIAVVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNR 398 T + I+RLS+AVV++ L A P P Q+ +I DL A G + R Sbjct: 371 IRHTKMNVGDIERLSVAVVVNYKTL---ADGKPLP--LTADQMKQIEDLTREAMGFSDKR 425 Query: 399 GDVINVTAVNF--LDPAGADMEPVSAPW--TDTLLRQSGSYANALAILAAVGLLIWFGLR 454 GD +NV F +D G ++ P+ + + Q + L +L +L +R Sbjct: 426 GDTLNVVNSPFSAVDNTGGEL-----PFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVR 480 Query: 455 PLL--RDQNVKPAGTEVAIREAGEVATPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLS 512 P L R + K A + +R+ E A + E L Sbjct: 481 PQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDE----------------------QLQ 518 Query: 513 DLRQRMRMPAKL---RLEQMIEMDEERVAAVLKQWI 545 R R+ A++ R+ +M + D VA V++QW+ Sbjct: 519 QRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWM 554
>FLAGELLIN#Flagellin signature. Length = 507 Score = 79.7 bits (196), Expect = 5e-19 Identities = 45/227 (19%), Positives = 83/227 (36%), Gaps = 7/227 (3%) Query: 4 ILTNSSALTALQTLASTNKSLESTQNRISTGLRISEASDNASYWSIATSMKSDNKANSAV 63 I TNS +L L + SL S R+S+GLRI+ A D+A+ +IA S+ K + Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 QDALGLGAGKVDTAYSAINKIRESVDDIKTKLVSAMGA--STEDKGKIETEIKSIVANIN 121 G T A+N+I ++ ++ V A S D I+ EI+ + I+ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 122 SALSNANYAGSNLLNGPTTDLNVVASYNRSGNAVTVDKITVKATDTDAKTMVKDIVDAGF 181 + + G +L+ V + N I ++ D + + V+ Sbjct: 124 RVSNQTQFNGVKVLSQDNQMKIQVGA-----NDGETITIDLQKIDVKSLGLDGFNVNGPK 178 Query: 182 FTSASDDTAIGTALNTVETALASLATGAATLGAAKSQIDSQKSFLSA 228 + D + + +T + + D+ + Sbjct: 179 EATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPD 225
>PERTACTIN#Pertactin signature. Length = 922 Score = 59.7 bits (144), Expect = 2e-10 Identities = 88/384 (22%), Positives = 134/384 (34%), Gaps = 45/384 (11%) Query: 2979 DTLLTNRLVIDGDTAGTTQVSVTNRGGLGAQTVEGIKIIQVGGASNGMFLLAGDYMFNGE 3038 D L+++LV+ D +G ++ V N G + + ++Q S F LA N + Sbjct: 487 DLGLSDKLVVMRDASGQHRLWVRNSGS-EPASGNTMLLVQTPRGSAATFTLA-----NKD 540 Query: 3039 QAVVAGAYGYRLYKGGVSTPADGNWYLRSALL----NPETPTNPTDPETPLYQPGVPLYE 3094 V G Y YRL G +G W L A P P P P P Sbjct: 541 GKVDIGTYRYRLAANG-----NGQWSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPP 595 Query: 3095 SYAGSLQQLNKLGTLQQRVGNRVWAKHPVPAQNDENGAGPS------------------- 3135 Q+ + Q G + A G + Sbjct: 596 QPPQPPQRQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSKRLGELRLN 655 Query: 3136 -GNNGIWARIEAAHAEFDPKQSTSRASYDADIWKFQTGIDGMFAETASGKFIGGVYVQYG 3194 G W R A + D + +D + F+ G D A +GG+ G Sbjct: 656 PDAGGAWGRGFAQRQQLDNRAGRR---FDQKVAGFELGADHAVAVAGGRWHLGGLA---G 709 Query: 3195 TVSSSVSSPFGNGSIESSGYGAGATLTWYGESDFYIDGVAQINWFDSDLNSATLGRQLVD 3254 G+G + G T+ S FY+D + + ++D A V Sbjct: 710 YTRGDRGFT-GDGGGHTDSVHVGGYATYIANSGFYLDATLRASRLENDFKVAGSDGYAVK 768 Query: 3255 GN-RAVGYSLSVETGQKIEIGEGWSLTPQAQLAYSAIRFDDFKDAFDTSVSPENDHDLTG 3313 G R G +S+E G++ +GW L PQA+LA + ++ A V E + G Sbjct: 769 GKYRTHGVGVSLEAGRRFAHADGWFLEPQAELAVFRVGGGAYRAANGLRVRDEGGSSVLG 828 Query: 3314 RLGLAINRDAEWLDAQGRRVAMHI 3337 RLGL + + E A GR+V +I Sbjct: 829 RLGLEVGKRIEL--AGGRQVQPYI 850
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 45.4 bits (107), Expect = 2e-07 Identities = 60/268 (22%), Positives = 99/268 (36%), Gaps = 37/268 (13%) Query: 36 IMLIVNGTLGDKSFFDSAANGMKMIKDKYGDEVETRILEIGDDPTKWEPVLLDASEQDWD 95 +++ G + DKSF SA +K I + G E+ +E + L A + W Sbjct: 65 VLITDEGKIDDKSFNQSAFEALKAINKQTGIEINN--VEPSSNFESAYNSALSAGHKIW- 121 Query: 96 LIIAGTYQMAETVGSVAQQYPDK------KYILYDASVPYEEGGYDNVYSIQYKQNEGSY 149 ++ G + + ++ K I D + E Y YS+Q+ E ++ Sbjct: 122 -VLNGFKHQQSIKQYI-DAHREELERNQIKIIGIDFDIETE---YKWFYSLQFNIKESAF 176 Query: 150 LGGLLAASLLKEGKLGDGAKNLGFLGGMDIPVINDFLVGYIAGA---QSVIPDAKI---- 202 G AS L E + + + GG P + F G+ G +KI Sbjct: 177 TTGYAIASWLSEQD--ESKRVVASFGGGAFPGVTTFNEGFAKGILYYNQKHKSSKIYHTS 234 Query: 203 AVSYAGSFMDAAKGKEL-------GLAQYRSGVSLGFVVASQTGLGQLSAAKETGKYVLG 255 V F K + A + + VA + A + G+YV+G Sbjct: 235 PVKLDSGFTAGEKMNTVINNVLSSTPADVKYNPHVILSVAGPATFETVRLANK-GQYVIG 293 Query: 256 VDSDQEAIFKDSDPAIAKQVVSSVLKNI 283 VDSDQ I ++++SVLK+I Sbjct: 294 VDSDQGMIQD------KDRILTSVLKHI 315
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 97.0 bits (241), Expect = 1e-26 Identities = 66/207 (31%), Positives = 102/207 (49%), Gaps = 12/207 (5%) Query: 35 FVMARYSASKPLIDPSIPAPARAAPRRKAEFVAGQACAREALRLAGGPAVMPGRGDDHAP 94 F + + L P A +RKAE +AG+ A ALR G V PG GD P Sbjct: 20 FDASSFREHDLLWLPHHDRLRSAGRKRKAEHLAGRIAAVHALREVGVRTV-PGMGDKRQP 78 Query: 95 IWPPGMVGSISHSKGCAIAVAARQSRYLGLGIDIERLQTESSARKIAPQILGESELRQLP 154 +WP G+ GSISH A+AV +RQ +GIDIE++ ++ +A ++AP I+ E + L Sbjct: 79 LWPDGLFGSISHCATTALAVISRQR----IGIDIEKIMSQHTATELAPSIIDSDERQILQ 134 Query: 155 EAGRAFLVS--LAFSAKESLFKALYPAVQQFQSFHAAAFSFDGDRQQACLELAVDWSAQW 212 + F ++ LAFSAKES++KA + F++A + + L + Sbjct: 135 ASLLPFPLALTLAFSAKESVYKA-FSDRVTLPGFNSAKVTSLTATHISLHLLPAFAATMA 193 Query: 213 RRGQRFPIRFFCRDGFILTCTAIAAIS 239 R +F RD ++ T ++AI+ Sbjct: 194 ER--TVRTEWFQRDNSVI--TLVSAIT 216
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 258 bits (660), Expect = 8e-89 Identities = 114/254 (44%), Positives = 153/254 (60%), Gaps = 12/254 (4%) Query: 15 GKRVIVTGAAQGIGRRVAERFLAEGATVIGLD-----------RQAGEADAPFRLIRLDI 63 GK +TGAAQGIG VA ++GA + +D EA D+ Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF-PADV 66 Query: 64 TDAAEVRAVSDGLKAEGKPLDILVNVAGVLKLGNSDRLSAEDWKTCMDVNASGPFHLLSQ 123 D+A + ++ ++ E P+DILVNVAGVL+ G LS E+W+ VN++G F+ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 124 WVPVFRDQRHGAIVNVASNAAHVPRLNMAAYCASKAALASFSHCVALELAPYGVRCNVVS 183 D+R G+IV V SN A VPR +MAAY +SKAA F+ C+ LELA Y +RCN+VS Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 184 PGSTRTAMLGAMLNDPSGEAQLVRGLPEQFKLGIPLGKIAMPDDIANVILFLASDQAGHV 243 PGST T M ++ D +G Q+++G E FK GIPL K+A P DIA+ +LFL S QAGH+ Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 244 TMQDIVVDGGATLG 257 TM ++ VDGGATLG Sbjct: 247 TMHNLCVDGGATLG 260
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 336 bits (863), Expect = e-118 Identities = 138/302 (45%), Positives = 188/302 (62%), Gaps = 18/302 (5%) Query: 1 MAIPKIADYPMPQKAGFPANKTNWQPDPARAVLLIHDMQRYFLRFYDANGPLMGDLIGNL 60 MAIP I Y MP + P NK +W PDP RAVLLIHDMQ YF+ + A + +L N+ Sbjct: 1 MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60 Query: 61 VRLRNWAHENGVPVVYTAQPHEQPAGDRALLNDMWGPGLPAAAPEQQLIVDKLTPGATDT 120 +L+N + G+PVVYTAQP Q DRALL D WGPGL + P ++ I+ +L P D Sbjct: 61 RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGL-NSGPYEEKIITELAPEDDDL 119 Query: 121 VLAKWRYSAFQRSDLLQRMKDWNRDQLIIGGIYAHIGCMVTAIDAFMNDIQPFMVGDAVA 180 VL KWRYSAF+R++LL+ M+ RDQLII GIYAHIGC+VTA +AFM DI+ F VGDAVA Sbjct: 120 VLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVA 179 Query: 181 DFSEEEHRLALKYVATRCGAVIDTASLIRK----------------PATETTRDWLQKRV 224 DFS E+H++AL+Y A RC + T SL+ + T + ++K++ Sbjct: 180 DFSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCENIRKQI 239 Query: 225 LELI-EDETELDPQENLILYGLDSLQVMKLSAELKERGVAVGFDDLARVPTLAAWWDLIE 283 EL+ E ++ QE+L+ GLDS+++M L + + G V F +LA PT+ W L+ Sbjct: 240 AELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQKLLT 299 Query: 284 TK 285 T+ Sbjct: 300 TR 301
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 27.6 bits (61), Expect = 0.049 Identities = 7/57 (12%), Positives = 15/57 (26%) Query: 134 TGGFKTKPGSPSYVQKVVASADVTTKPIAVVPMIRKTPDAAAAVAAPVKKRQPADRN 190 F PS +QK + + ++A + V + + Sbjct: 78 ANNFDMVGSIPSIIQKYNPNNQDYIDELPSSDNQEYDDNSAPSGGFFVPQNDNVTQT 134
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 103 bits (259), Expect = 6e-26 Identities = 73/402 (18%), Positives = 148/402 (36%), Gaps = 19/402 (4%) Query: 36 FMAILDIQIVSASLSEIQAGLGASTDEISWVQTSYLIAEVIMIPLSGFLGRLLSTRVLFT 95 F ++L+ +++ SL +I +WV T++++ I + G L L + L Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 96 ISAAGFTLASMLCATA-TNIEQMIVYRAIQGFIGGGMIPSVFAAAFTIF-PPSKRSIVSP 153 S++ + +I+ R IQG G P++ + P R Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQG-AGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 154 MIGLVATLAPTIGPTIGGYLSHAFSWHWLFLVNVGPGILVTIAAWNLIDFDEGDLSLLDK 213 +IG + + +GP IGG ++H W +L L+ P I + I L+ + ++ + Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI---PMITI-ITVPFLMKLLKKEVRIKGH 198 Query: 214 FDWWGLFGMAAFLGSLEYVLEEGPRNDWLQDHTIFIMSIILTIGAIVFFYRVFTAEQPIV 273 FD G+ M+ + I+ + ++F + P V Sbjct: 199 FDIKGIILMSVGIVFFMLFTTS---YSIS-------FLIVSVLSFLIFVKHIRKVTDPFV 248 Query: 274 DFRAFRNMNFAFGSLFSFVMGVGLYGLTYLYPLYLSMIRGYDALMIGEA-LFVSGLAMFF 332 D +N+ F G L ++ + G + P + + IG +F +++ Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308 Query: 333 TAPVAGFLSNRMDPRLMMMIGFVGFAIGTWLVTGLTADWDFNELLMPQILRGCSLMLCMV 392 + G L +R P ++ IG ++ +L + + + + L Sbjct: 309 FGYIGGILVDRRGPLYVLNIGVTFLSVS-FLTASFLLETTSWFMTIIIVFVLGGLSFTKT 367 Query: 393 PINNLALGTLPPSLMKNASGLFNLTRNLGGAVGLAVINTILT 434 I+ + +L L N T L G+A++ +L+ Sbjct: 368 VISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 110 bits (276), Expect = 2e-28 Identities = 62/413 (15%), Positives = 127/413 (30%), Gaps = 89/413 (21%) Query: 69 RVVLPSLVAVAAIGALWYGYNWWTVGRFMVSTDDAYVQGDIASIAPKVTGYIENIPVAAN 128 R+V ++ I + V + G I P ++ I V Sbjct: 58 RLVAYFIMGFLVIAFILSV--LGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEG 115 Query: 129 QQVKAGDVIFQLDAGDYQIALDEANAKLATQ----------------------------- 159 + V+ GDV+ +L A + + + L Sbjct: 116 ESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPY 175 Query: 160 ----------------KETLIRIQAQTDAAKAALLQANADQQAAKAVLLNAQST------ 197 KE Q Q + L + A++ A + ++ Sbjct: 176 FQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Query: 198 -MARVQKLHETRFV-------AQSELDNAQSALDQARARLAGADAQIASAKANISVLEAQ 249 + L + + +++ A + L +++L +++I SAK ++ Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 250 Y--------NEAASSTKSLELARDKAARDLSFTSLRALFDGVIGNLS-GKKGDLVAPGQK 300 + + + L L K + +RA + L +G +V + Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355 Query: 301 IAALVPVDQ-LYIDANFKETQLAHIKVGETAHIYVDAIDGTKF---DGKVASIAPASGAV 356 + +VP D L + A + + I VG+ A I V+A T++ GKV +I + Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA--- 412 Query: 357 FSLLPPENATGNFTKVVQRVPVRITIPKEAFESGK---IRAGLSVIVDVDTRT 406 + G V+ + K + +G++V ++ T Sbjct: 413 ----IEDQRLGLVFNVIISIEE-----NCLSTGNKNIPLSSGMAVTAEIKTGM 456
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 75.8 bits (186), Expect = 7e-19 Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 9/155 (5%) Query: 54 RSQILEGAQSVFLRMGFDAASMNDITREAGVSKGTIYVYFNSKEDLFVALCEHYRQTLFS 113 R IL+ A +F + G + S+ +I + AGV++G IY +F K DLF + E + Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 114 SFIGQLEKGFSNRQELIDFGVALTTLITSSIAIRAQRIVVGVSERKPELA------ARFY 167 + K + + L ++ S++ +R+++ + K E + Sbjct: 73 LELEYQAKFPGDPLSV--LREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQ 130 Query: 168 ERGPKRSHAIMAQSLQAMIDAGVL-EQHDVTRTAY 201 S+ + Q+L+ I+A +L R A Sbjct: 131 RNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAI 165
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 288 bits (738), Expect = 8e-98 Identities = 95/344 (27%), Positives = 164/344 (47%), Gaps = 9/344 (2%) Query: 10 KTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLA---VFLRELI 66 KTE+ T +KIRDA KG + S+E A I + + + ++ + + E Sbjct: 5 KTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQS 64 Query: 67 DRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVGERIRPQ 126 P L + + + L P+ + L IA+ Q GE I+P Sbjct: 65 YLPFSQAL------SYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118 Query: 127 ASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATDPGALPE 186 +I+P++G +RIF VEFLKS+ K++ S++++++ + Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178 Query: 187 FLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDPLVKSRL 246 L + + +L+V + I+ D A+ + +EL+M++ E+K E K+ EG P +KS+ Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238 Query: 247 RSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREI 306 R ++ R M V ++++VANPTH ++ + YK E P+V K D +R+I Sbjct: 239 RQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298 Query: 307 AASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIIN 350 A +P+ + + LARALY VD I E +A AE++R + Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE 342
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 190 bits (484), Expect = 6e-60 Identities = 80/330 (24%), Positives = 158/330 (47%), Gaps = 13/330 (3%) Query: 22 VDTLTGPQKAAAILVAIGRPAAARLLKHFNAEDLRKLAGHARTLEPISPLDFEQLVKQFE 81 V LTG QKAA +LV+IG ++++ K+ + E++ L LE I+ + ++ +F+ Sbjct: 12 VSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFK 71 Query: 82 DLF-AEGAPVSEAAQRFEGLLRDTLPQEEVDAVLEDRVQPQLVQESVWIQVARLPMESLQ 140 +L A+ LL +L ++ ++ + +Q + V R ++ Sbjct: 72 ELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSA--LQSRPFEFVRRADPANIL 129 Query: 141 AYLGNQHPQIIAYIVSRLPSDLAARLFVALPPQLRNAVVQRSLHIGNVAPAAAELLEDVL 200 ++ +HPQ IA I+S L A+ + +LP +++ V +R + +P +E VL Sbjct: 130 NFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVL 189 Query: 201 RRDL-----LGRSDAGPLKAHHGQIANIFNQLDRSEMEELMASLQDLNRDDLNRIKAKLF 255 + L + AG + + I N DR + ++ SL++ + + IK K+F Sbjct: 190 EKKLASLSSEDYTSAGGVDN----VVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 256 TFEDIERLSQRARLLLFDEVQTEQIATALREADPKLQELVLSSLSARGRRMVESELSAEQ 315 FEDI L R+ + E+ +++A AL+ D +QE + ++S R M++ ++ Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEF-L 304 Query: 316 GNITSQNIAEARRIIARIAIDLSERGIITL 345 G +++ E+++ I + L E+G I + Sbjct: 305 GPTRRKDVEESQQKIVSLIRKLEEQGEIVI 334
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 88.4 bits (219), Expect = 5e-26 Identities = 37/84 (44%), Positives = 59/84 (70%), Gaps = 3/84 (3%) Query: 32 SASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIA 91 S + ++DLIM IPV + V LG T M + L++L +G+V+ LD G+P+DI++NG +IA Sbjct: 48 SGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107 Query: 92 RGEVIVLEDDSSRFGVSLTEIIGK 115 +GEV+V+ D ++GV +T+II Sbjct: 108 QGEVVVVAD---KYGVRITDIITP 128
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.1 bits (62), Expect = 0.015 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 68 AKLDARLAETQRVRREMDEAIEELNRLRKALSRDMRQARILAETPPPRQEKTPSAAEQPL 127 A+ + ETQ + +E+ + + + ++ ++ P+QE++ + Q Sbjct: 1086 AQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQV-SPKQEQSETVQPQAE 1144 Query: 128 PADKNA 133 PA +N Sbjct: 1145 PAREND 1150
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 31.1 bits (70), Expect = 0.004 Identities = 5/33 (15%), Positives = 18/33 (54%) Query: 3 NNSIYVGLSSLITLERRMDAIAHNVANASTVGF 35 ++ I +S L + ++ ++N+++ + G+ Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGY 33
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 31.1 bits (70), Expect = 0.001 Identities = 10/38 (26%), Positives = 20/38 (52%) Query: 99 NVNMVVEMADMREANRSYEANLQVVRQARELISMTIDL 136 VN+ E +++ + Y AN QV++ A + I++ Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 35.4 bits (81), Expect = 9e-06 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Query: 33 QAVPAAPGASFGEVLSQMTGSVSQKLQAAEATSIQGIKG--DAPVRDVVSSVMEAEQSLQ 90 Q P SF L +S AA + + G + DV++ + +A S+Q Sbjct: 23 QESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQ 82 Query: 91 TVIAIRDKIVQAYLEISRMPI 111 I +R+K+V AY E+ M + Sbjct: 83 MGIQVRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.6 bits (100), Expect = 9e-07 Identities = 10/45 (22%), Positives = 21/45 (46%) Query: 213 SIKQGYLEASNVDPVKEITDLITAQRAYEMNSKVIQAADEMAATV 257 + S V+ +E +L Q+ Y N++V+Q A+ + + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDAL 542 Score = 39.2 bits (91), Expect = 1e-05 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 15/85 (17%) Query: 4 LTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVP 63 + A +G+NA Q L +NNI++ N G+ R + T + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTR------------QTTIMAQANSTLG--- 48 Query: 64 EGALVGLGVQTAAVRNLHIQGSFNQ 88 G VG GV + V+ + NQ Sbjct: 49 AGGWVGNGVYVSGVQREYDAFITNQ 73
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 188 bits (479), Expect = 4e-62 Identities = 67/248 (27%), Positives = 102/248 (41%), Gaps = 27/248 (10%) Query: 2 KNSMNKAILAVAMVLLLAGCA---TKPEEIG-----RAPDLSPVAAHLGMQNNPQFNGYP 53 KN+ + ++ +VL L GCA + P G P +PVA Q+ Q Y Sbjct: 3 KNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQS-AQPINYG 61 Query: 54 ARPGKASYSLWDQRSTNFFKDPRAATPGDVLTVIISINDRANLDNKTDRERVSKGIYGGG 113 +P F+D R GD LT+++ N A+ + + R K G Sbjct: 62 YQP--------------LFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKT--NFG 105 Query: 114 GSFAASSITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLPNGNLII 173 + G A V + GKG S + V L NGNL + Sbjct: 106 FDTVPRYLQGLFGNAR--ADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHV 163 Query: 174 RGSQEVRVNNELRVLNVAGVVRPRDISGNNTISYDKIAEARISYGGRGRLSEIQQPPYGQ 233 G +++ +N + +GVV PR ISG+NT+ ++A+ARI Y G G ++E Q + Q Sbjct: 164 VGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQ 223 Query: 234 QILDQFSP 241 + SP Sbjct: 224 RFFLNLSP 231
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 248 bits (636), Expect = 1e-85 Identities = 100/234 (42%), Positives = 149/234 (63%), Gaps = 3/234 (1%) Query: 13 LALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAF 72 L L Q + G G + VQ +T L+ P +L+M+TSFTR I F Sbjct: 12 LWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVF 71 Query: 73 SLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEIS 132 LLR+ LG +AP + V++ LALF+TF++M+P D+ + + QP +I+ + A + + Sbjct: 72 GLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGA 131 Query: 133 QPFREFMMAQVRDKDLRLFEDLAD-PSFRTSDDGIVDFRVLVPAFMISELRRGFEIGFLI 191 QP REFM+ Q R+ DL LF LA+ + + V R+L+PA++ SEL+ F+IGF I Sbjct: 132 QPLREFMLRQTREADLGLFARLANTGPLQGPEA--VPMRILLPAYVTSELKTAFQIGFTI 189 Query: 192 VLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 +PFL+IDLV+A++ M++GMMM+PP I+LPFK++ FVL+DGW +LVGSL +SF Sbjct: 190 FIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 35.8 bits (82), Expect = 6e-04 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 12/162 (7%) Query: 234 SGATCDGAEYGDCRRNRRSIHRAGKAANRQALKNNNEAPAMTEILASPAIQNLRNEEARV 293 SG+ G + G + +IH K + Q K E A + A + N +A Sbjct: 32 SGSGGGGGKGGSKSESSAAIHATAKWSTAQLKKTQAEQAARAKAAAEAQAKAKANRDALT 91 Query: 294 QRHLD----ELKANGALKSAEIPVLMAERESLKQQITA--------QVDEIIKSLSNEIR 341 QR D L+ N + + + A +++ + + + ++ + Sbjct: 92 QRLKDIVNEALRHNASRTPSATELAHANNAAMQAEDERLRLAKAEEKARKEAEAAEKAFQ 151 Query: 342 IAVQRRTSLEKELKEAETDLAKANQAQVRAAQLDREANASRV 383 A QRR +E+E E E L A + R A L EA A + Sbjct: 152 EAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEI 193
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 74.1 bits (182), Expect = 2e-16 Identities = 25/213 (11%), Positives = 73/213 (34%), Gaps = 7/213 (3%) Query: 151 VTAGMQLI-----SAQQEYADLQMQITAQTIRRARFEAELKGTDFTYAVPEQTAANKDMV 205 V G L+ A+ + Q + + + R++ + + + Sbjct: 118 VRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQ 177 Query: 206 ALTRHMVEGERTLFDVRRNNLAAERRALEAQAASYGDEITTLQQSIKLHDTEIQLLQENV 265 ++ V +L + + ++ E E T+ I ++ ++ + + Sbjct: 178 NVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRL 237 Query: 266 NSSKSLVDRGLAAKSSLRDMERDLSSTRRDALELASFLARARQNQLAVEQRIANLDETRR 325 + SL+ + AK ++ + E + S L + L+ ++ + + + Sbjct: 238 DDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFK 297 Query: 326 SEAASSLQEIDLNMA--RMQRRSNSQLEAMAEI 356 +E L++ N+ ++ N + + + I Sbjct: 298 NEILDKLRQTTDNIGLLTLELAKNEERQQASVI 330
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 79.8 bits (197), Expect = 5e-19 Identities = 71/352 (20%), Positives = 130/352 (36%), Gaps = 72/352 (20%) Query: 19 KIFVAGHTGMVGSAILRRLQHED-----CDIITAAHSVL-------------------DL 54 K V G G +G + +RL D + + V DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 55 T-RQGPTENFISGHRPDVIIIAAARVGGILANSRFPADFLYDNLAIGMNLIHAAHQIGVE 113 R+G T+ F SGH + + I+ R + + P + NL +N++ ++ Sbjct: 62 ADREGMTDLFASGH-FERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 114 RLLWLGSSCIYPRDAAQPLTEDALLTGPLEPTNEAYAIAKIAGLKYAQSCARQF-----G 168 LL+ SS +Y + P + D + P+ YA K A A + + + G Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATG 175 Query: 169 DRFITAMPTNLYGPNDNFDPTSSHVLPALIRRVHEARMRGAEEVVLWGSGKPLREFLHVD 228 RF T +YGP D L + + E + + ++ GK R+F ++D Sbjct: 176 LRFFT-----VYGPWGRPD----MALFKFTKAMLE-----GKSIDVYNYGKMKRDFTYID 221 Query: 229 DLADACLHLL------------------RFYNGIEPVNIGSGEEISIKELALTVARIVGY 270 D+A+A + L NIG+ + + + + +G Sbjct: 222 DIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI 281 Query: 271 EGRFEHDLSKPDGTPRKLLDTSRI-EALGWQPRIHLEDGLR---DVYRNWLE 318 E + +P DT + E +G+ P ++DG++ + YR++ + Sbjct: 282 EAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 86.0 bits (213), Expect = 5e-21 Identities = 68/354 (19%), Positives = 126/354 (35%), Gaps = 50/354 (14%) Query: 7 LFVGVTGQDGAYLSELLLGKGYRVHGLKRRSSSFNMARIDHLYQDPHEEDIRFRLHFGDL 66 L G G G ++S+ LL G++V G+ + ++++ + + +F H DL Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQF--HKIDL 61 Query: 67 TDATNLCRVIQEVQPDEIYNLGAQSHVQVSFETPEYTANADALGTLRLLESMRILGLGKS 126 D + + + ++ + V+ S E P A+++ G L +LE R + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ-- 119 Query: 127 CRFYQASTSELFGNSSHHAQNEQTPFA-------PRSPYATAKLYAYWTTVNYRDAYGFH 179 AS+S ++G N + PF+ P S YA K Y YG Sbjct: 120 -HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLP 172 Query: 180 ASNGILFNHESPLRGETFVTRKITRAVA---AIERGLQDRLRLGNLEARRDWGHARDYVE 236 A+ F P K T+A+ +I+ + +RD+ + D E Sbjct: 173 ATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSID-------VYNYGKMKRDFTYIDDIAE 225 Query: 237 GMWRILQEDTPDDYVLATGETHTVREFIEHAFKAVDKQIVWHGDG--------VDEVGID 288 + R+ V+ +T E A ++ G+ + ++ Sbjct: 226 AIIRLQD-------VIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQA--LE 276 Query: 289 RKTGNCLIEIDPRY--FRPNEVDFLMGDASKAKDRLGWQHTTGFENLVAEMVDW 340 G IE +P +V D + +G+ T ++ V V+W Sbjct: 277 DALG---IEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 49.5 bits (118), Expect = 3e-09 Identities = 52/250 (20%), Positives = 87/250 (34%), Gaps = 69/250 (27%) Query: 1 MK--SVILASIAAMFATSAMAADVVVSEPSAPTAAPVDTFSWTGGYIGINAGYAGGKFKH 58 MK ++ +A A FAT A AAP D +TG +G + Y F + Sbjct: 1 MKKTAIAIAVALAGFATVA-------------QAAPKDNTWYTGAKLG-WSQYHDTGFIN 46 Query: 59 PFSSFDKEDGEHVSGSPDVTAGGFVG-------GVQAGYNWQLDNGVVLGAETDFQGLSV 111 + + AG F G G + GY+W + Sbjct: 47 NNGPTHENQ---------LGAGAFGGYQVNPYVGFEMGYDW-------------LGRMPY 84 Query: 112 TGSISAGASSLEGNAETKVEWFGTVRARLGYTATERLMVYGTGGLAYGKVKSAFNLGDDA 171 GS+ GA +G + A+LGY T+ L +Y G + + N+ Sbjct: 85 KGSVENGAYKAQG---------VQLTAKLGYPITDDLDIYTRLGGMVWRADTKSNVYGK- 134 Query: 172 PALHTWSDKTKAGWTLGAGAEYAINNNWTLKSEYLYT-DLGKRNLVDVDNSFLESKVNFH 230 + T G EYAI + EY +T ++G + + + + Sbjct: 135 ------NHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGT-------RPDNG 181 Query: 231 TVRVGLNYKF 240 + +G++Y+F Sbjct: 182 MLSLGVSYRF 191
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 71.6 bits (175), Expect = 2e-17 Identities = 29/179 (16%), Positives = 60/179 (33%), Gaps = 13/179 (7%) Query: 9 PPQASLSSEQTRKALIVAALRLFGAKGYEATSTREIASLAKANIGSIAYHFGGKEGLRLA 68 + +++TR+ ++ ALRLF +G +TS EIA A G+I +HF K L Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 69 AADYIVETFRLIAAQALGNFQPAGFSREEREDARAQMISALERMVHFIVARPETGEIVQF 128 + + + F D + + L ++ V +++ Sbjct: 62 IWELSESNIGELELEYQAKF---------PGDPLSVLREILIHVLESTVTEERRRLLMEI 112 Query: 129 LLRELAHPTAA--LDRIYKGVFEPVHKRLCMIWEAA--TGEAAESEATRLVVFTLVGQI 183 + + + + + + + R+ + TR + G I Sbjct: 113 IFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 58.7 bits (142), Expect = 9e-12 Identities = 21/131 (16%), Positives = 47/131 (35%), Gaps = 5/131 (3%) Query: 27 VEGEFVQLAPLQVAQVRDIAVKRGDRVEAGEPIATVEDTDARIAVAQAEAALAQAQAQLA 86 G ++ P++ + V++I VK G+ V G+ + + A + +++L QA+ + Sbjct: 92 HSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQT 151 Query: 87 NLQVGKRPEEIAVLEAAVRSARAQADDAQRTLLRTRDLARRGVATQAQLDDAATQLEVAE 146 Q+ +E D+ + ++ R + Q Q E Sbjct: 152 RYQI-----LSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206 Query: 147 AAIGQSTANLA 157 + + A Sbjct: 207 LNLDKKRAERL 217 Score = 44.8 bits (106), Expect = 3e-07 Identities = 27/257 (10%), Positives = 79/257 (30%), Gaps = 25/257 (9%) Query: 67 ARIAVAQAEAALAQAQAQLANLQVGKRPEEIAVLEAAVR---SARAQADDAQRTLLR-TR 122 + +AE A+ + + + A+ + + + Sbjct: 207 LNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVN 266 Query: 123 DLARRGVATQAQLDDAATQLEVAEAAIGQSTANLAVGKLPARPEEIKAAENAVKSAEAQL 182 +L ++QL+ +++ A+ T L ++++ + + +L Sbjct: 267 ELR----VYKSQLEQIESEILSAKEEYQLVTQLFKNEIL----DKLRQTTDNIGLLTLEL 318 Query: 183 QTAKWQRAQRTIEAPAAGRITDV-VRNPGDIAGPSAPVLTMLPDGAVKL-KVYIPEERFS 240 + ++ I AP + ++ + V G + + ++ ++P+ + + Sbjct: 319 AKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIG 378 Query: 241 DVAVGSVLSVHCDG----CAPGLQARVSYVSPD---PEFTPPVIYSLETRQKLVYLVEAH 293 + VG + + L +V ++ D + V + + Sbjct: 379 FINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVI--ISIEENCLSTG 436 Query: 294 PVDPASPLQPGQIVDVD 310 + PL G V + Sbjct: 437 --NKNIPLSSGMAVTAE 451
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 48.8 bits (116), Expect = 9e-09 Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 8/173 (4%) Query: 206 ALTRETERGTMENLLAMPATPAEIMLGKIL---PYLAVGGVQMVLVAAKLIFGVPFVGSL 262 A R + T E +L +I+LG++ A+ G + +VAA L G SL Sbjct: 90 AFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAAL--GYTQWLSL 147 Query: 263 TLLLSSVLIFVLSLALLGYTISTVSRTQMQAMQLTFFFFLPSLMLSGFMFPFRGMPDWAQ 322 L + + L+ A LG ++ ++ + + P L LSG +FP +P Q Sbjct: 148 LYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQ 207 Query: 323 ALGNIFPLTYFLRIVRAVMLKGAGLADIAGEVMALILF--VFLFAGLALLRFR 373 PL++ + ++R +ML D+ V AL ++ + F ALLR R Sbjct: 208 TAARFLPLSHSIDLIRPIMLGHPV-VDVCQHVGALCIYIVIPFFLSTALLRRR 259
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.035 Identities = 11/20 (55%), Positives = 13/20 (65%) Query: 33 LIGPSGCGKSTLLRFLGGLE 52 L G G GKSTL+ L GL+ Sbjct: 601 LEGTGGIGKSTLINTLVGLD 620
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.4 bits (97), Expect = 7e-06 Identities = 37/200 (18%), Positives = 71/200 (35%), Gaps = 12/200 (6%) Query: 57 IQGSLGATLTETTWLVAAYMAPFASLTILLLKIRTQFGLRRFAEVAIAVFLVASLLHLLV 116 I T W+ A+M F+ T + K+ Q G++R I + S++ + Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG 99 Query: 117 YDVWS-AIPVRFI--AGAAAVPISSVGVLYMLEAFPPDKKRTWGLSLALTCSGAAGPFAR 173 + +S I RFI AGAAA P + V + + P + R L + Sbjct: 100 HSFFSLLIMARFIQGAGAAAFPALVMVV---VARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 174 IISPMLFDIGQWQQLYMLEIGLALACFAVVYVLPLTQIPRAKVLHWLDFVAYTFIAIGFG 233 I M+ W L ++ + + ++ +L ++ D +++G Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLK----KEVRIKGHFDIKGIILMSVGI- 211 Query: 234 ALVVVLVQGKNYWWFEAPWI 253 + +L F + Sbjct: 212 -VFFMLFTTSYSISFLIVSV 230
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 104 bits (260), Expect = 8e-27 Identities = 63/414 (15%), Positives = 130/414 (31%), Gaps = 85/414 (20%) Query: 3 VSKKYIRGGFAILIGLLGVFIILWAWQLPPFKHSVETTDNAYVRGQVTVMSPQVSGYITK 62 VS++ + I+ L+ F + + L + G+ + P + + + Sbjct: 53 VSRRPRLVAYFIMGFLVIAF--ILSV-LGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109 Query: 63 VNVTDYEQVKKGDLLFEID------------SRSYQQKLDQA------------------ 92 + V + E V+KGD+L ++ S Q +L+Q Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169 Query: 93 ----------------------LAALDSKKAALANSEQSQRSAEATIKAREAQISGAKAA 130 + + E + A A+I+ + Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229 Query: 131 LEVAKANTVRVDTLLPRG-------VTTQSSADTAHGNMLQAQAAVDQAEAALAVAKEDL 183 V K+ +LL + + ++ A + ++ ++Q E+ + AKE+ Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY 289 Query: 184 --------RTIIVAREGLNADLHNAEAAVALARIDLQNTKILAPRDGKLGEVGVR-LGQY 234 I+ ++ +A Q + I AP K+ ++ V G Sbjct: 290 QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV 349 Query: 235 VTAGTQLVSLVP--AVKWIMANFKETQLYGMKVGQPVTLTVDAL---RHAELKGHIEAFS 289 VT L+ +VP + A + + + VGQ + V+A R+ L G ++ + Sbjct: 350 VTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409 Query: 290 PATGSEFSVIKSDNATGNFTKITQRLSVRISIDEGQPDAELLAPGMSVVVRVDT 343 D G + + + L+ GM+V + T Sbjct: 410 LDA-------IEDQRLGLVFNVIISIEENCLSTGNKN--IPLSSGMAVTAEIKT 454
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.9 bits (236), Expect = 1e-24 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%) Query: 4 GAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSG 63 GA IL+ DDD IR +L++ L R G V I N + ++ DLV+ DV++P ++ Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 64 IEICQDVR-RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRRF 122 ++ ++ +P+++++A I E GA DY+ KPFD EL+ I L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 123 EGNRSPQRALTQIYRFAG 140 + R P + Sbjct: 123 K--RRPSKLEDDSQDGMP 138
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 460 bits (1186), Expect = e-147 Identities = 229/1043 (21%), Positives = 432/1043 (41%), Gaps = 61/1043 (5%) Query: 7 LSDWALNHRSLVWYFMLVFLVAGLVSYLDLGREEDPEFTVKTMVVQANWPGASIDETLNQ 66 ++++ + W ++ ++AG ++ L L + P + V AN+PGA + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 67 VTDRLEKKLEELDTLDYTRSVTT-AGKSVVFVFLKDTTRAQDVKKSWTEVRHLLTDIQNT 125 VT +E+ + +D L Y S + AG + + + T D + +V++ L Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGT---DPDIAQVQVQNKLQLATPL 117 Query: 126 LPQGVYGPY-FNDQFGDVFGNIYAFTADGLSMRQ--LRDYAED-VRTKILTIPNAGKVEL 181 LPQ V ++ + + F +D Q + DY V+ + + G V+L Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 182 IGAQDEAIYLEFSTRQVAALGLDQQAILKALQDQNAITPSGVVQAGPE------RISVRV 235 GAQ A+ + + L ++ L+ QN +G + P S+ Sbjct: 178 FGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 236 SGQFNSEADLRAVNLRVNN--RFFRLSDVATITRGYVDPPTSIFRVNGEDAIGLGIGMKP 293 +F + + V LRVN+ RL DVA + G + I R+NG+ A GLGI + Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARINGKPAAGLGIKLAT 295 Query: 294 NGNLLEFGAELDKMMDQVTAELPVGVKVFKVADQPQVVKEAVSGFTQALFEAVVIVLAVS 353 N L+ + + ++ P G+KV D V+ ++ + LFEA+++V V Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 354 FVSLG-LRAGFVVSLSIPLVLAITFLSMSLMDISLQRVSLGALIIALGLLVDDAMIAVEM 412 ++ L +RA + ++++P+VL TF ++ S+ +++ +++A+GLLVDDA++ VE Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 413 MV-ARLEHGDPINKAATYVYSHTAFPMLTGTLVTIAGFIPIGLNNSQAGEYTFTLFVVIA 471 + +E P +A S ++ +V A FIP+ G + I Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 472 VSLLVSWVVAVLFAPLLGVTFLPKKMKPHEEKRSRFFEAFSRVLLLSM-----------R 520 ++ +S +VA++ P L T L H E + FF F+ S+ Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILG 535 Query: 521 HKWTTIITTIVLFVISVFGMGFIERQFFPQSDRPELVLDWTLPQNSSIADTKAQMERFEE 580 ++ ++ V + F P+ D+ + LP ++ T+ +++ + Sbjct: 536 STGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTD 595 Query: 581 TMLKDN-PDVEHWSTYVGQGAIRFVLSFDVQPANPYFGQMVAVARDVEARDRLKAKFEAA 639 LK+ +VE T G SF Q N + + D A+ Sbjct: 596 YYLKNEKANVESVFTVNG-------FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIH 648 Query: 640 -FRKDYVGTDVYVKYLELGPPV---GRPVQYRI-----SGPDVQKLRGIAQDFAGILS-A 689 + + P + G + +G L G+ + Sbjct: 649 RAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQH 708 Query: 690 DKRLGVVNYNWNEPGRVIRVDVMQDKARKLGISSKDIATTLNGVVGGITITQVRDSIYLI 749 L V N E +++V Q+KA+ LG+S DI T++ +GG + D + Sbjct: 709 PASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVK 768 Query: 750 DVIARAQAHERDSIDTLQSLQVATGNGTSVPLAAIANFRYELEQPVIYRRSRIPTITVAA 809 + +A A R + + L V + NG VP +A + P + R + +P++ + Sbjct: 769 KLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQG 828 Query: 810 GIIDKTMPDTIARDLGPAIKTFADRLPAGYYIQTAGTVEESGKSQGPIAAVVPLMLFVMA 869 P T + D ++ A +LPAG G + S A+V + V+ Sbjct: 829 EA----APGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVF 884 Query: 870 TVLMVQLQSFQRLFLVVAVAPLGLIGVVAALLPSGKPLGFVAILGVLALIGILIRNSVIL 929 L +S+ V+ V PLG++GV+ A + ++G+L IG+ +N++++ Sbjct: 885 LCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILI 944 Query: 930 IVQVEE-DIQEGLHPWDAVMKASQHRMRPIALTAAAASLALIPIA------REVFWGPMA 982 + ++ +EG +A + A + R+RPI +T+ A L ++P+A + Sbjct: 945 VEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQN-AVG 1003 Query: 983 YAMMGGIIAGTAITLLFLPALYV 1005 +MGG+++ T + + F+P +V Sbjct: 1004 IGVMGGMVSATLLAIFFVPVFFV 1026 Score = 96.8 bits (241), Expect = 2e-22 Identities = 89/507 (17%), Positives = 173/507 (34%), Gaps = 34/507 (6%) Query: 10 WALNHRSLVWYFMLVFLVAGLVSYLDLGREEDPEFTVKTMVVQANWP-GASIDET---LN 65 L + + +V +L L PE + P GA+ + T L+ Sbjct: 532 KILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLD 591 Query: 66 QVTDRLEKKLEELDTLDYTRS-VTTAGKSV----VFVFLKDTTRAQDVKKSWTEVRHLLT 120 QVTD K + +T + + +G++ FV LK + S V H Sbjct: 592 QVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAK 651 Query: 121 DIQNTLPQGVYGPYFNDQFGDVFGNIYAFTADGLSMR-QLRDYAEDVRTKILTIPNAGKV 179 + G P FN G F + + D R ++L + Sbjct: 652 MELGKIRDGFVIP-FNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 180 ELIGAQDEA------IYLEFSTRQVAALGLDQQAILKALQDQNAITPSGVVQAGPE--RI 231 L+ + LE + ALG+ I + + T ++ Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 232 SVRVSGQF-NSEADLRAVNLRVNN-RFFRLSDVATITRGYVDPPTSIFRVNGEDAIGLGI 289 V+ +F D+ + +R N S T Y + R NG ++ + Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVY--GSPRLERYNGLPSMEIQG 828 Query: 290 GMKPNGNLLEFGAELDKMMDQVTAELPVGVKVFKVADQPQVVKEAVSGFTQALFEAVVIV 349 P + + A ++ + + LP G+ + + + + + + V+V Sbjct: 829 EAAPGTSSGDAMALMENLASK----LPAGIG-YDWTGMSYQERLSGNQAPALVAISFVVV 883 Query: 350 ---LAVSFVSLGLRAGFVVSLSIPLVLAITFLSMSLMDISLQRVSLGALIIALGLLVDDA 406 LA + S V L +PL + L+ +L + + L+ +GL +A Sbjct: 884 FLCLAALYESW--SIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 407 MIAVEMMVARLEH-GDPINKAATYVYSHTAFPMLTGTLVTIAGFIPIGLNNSQAGEYTFT 465 ++ VE +E G + +A P+L +L I G +P+ ++N Sbjct: 942 ILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001 Query: 466 LFVVIAVSLLVSWVVAVLFAPLLGVTF 492 + + + ++ + ++A+ F P+ V Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVFFVVI 1028 Score = 73.3 bits (180), Expect = 4e-15 Identities = 81/524 (15%), Positives = 172/524 (32%), Gaps = 44/524 (8%) Query: 517 LSMRHKWTTIITTIVLFVISVFGMGFIERQFFPQSDRPELVLDWTLPQNSSIADTKAQME 576 +R + I+L + + + +P P + + P + + + Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GADAQTVQDTVT 62 Query: 577 RFEETMLKDNPDVEH-WSTYVGQGAIRFVLSFDVQPANPYFGQMVAVARDVEARDRLKAK 635 + E + ++ + ST G++ L+F +P Q+ + A L + Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSG-TDPDIAQVQVQNKLQLATPLLPQE 121 Query: 636 FEAAFRKDYVGTDVYVKYLELGPPVGRPVQYRISGPDVQKLRGIAQDFA--GILSADKRL 693 + + V+ + + + D+ + RL Sbjct: 122 VQQ--------QGISVEKSSSSYLM----VAGFVSDNPGTTQDDISDYVASNVKDTLSRL 169 Query: 694 -GVVNYNWNEPGRVIRVDVMQDKARKLGISSKDIATTLNG----VVGGITITQVRDSIYL 748 GV + +R+ + D K ++ D+ L + G Sbjct: 170 NGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQ 229 Query: 749 IDVIARAQAHERDSIDTLQSLQVATGNGTSVPLAAIANFRYELEQPVIYRRSR-IPTITV 807 ++ AQ ++ + + +G+ V L +A E + R P + Sbjct: 230 LNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGL 289 Query: 808 AAGIIDKTMPDTIARDLGPAIKTFADRLPAGYYIQ----TAGTVEESGKSQGPIAAVVPL 863 + A+ + + P G + T V+ S I VV Sbjct: 290 GIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLS------IHEVVKT 343 Query: 864 MLFVMATVLMVQ---LQSFQRLFLVVAVA-PLGLIGVVAALLPSGKPLGFVAILGVLALI 919 + + V +V LQ+ R L+ +A P+ L+G A L G + + + G++ I Sbjct: 344 LFEAIMLVFLVMYLFLQNM-RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAI 402 Query: 920 GILIRNSVILIVQVEEDIQE-GLHPWDAVMKASQHRMRPIALTAAAASLALIPIA----- 973 G+L+ ++++++ VE + E L P +A K+ + A S IP+A Sbjct: 403 GLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGS 462 Query: 974 REVFWGPMAYAMMGGIIAGTAITLLFLPALYVAWFRIKEPEHSP 1017 + + ++ + + L+ PAL + EH Sbjct: 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHE 506
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 61.0 bits (148), Expect = 2e-12 Identities = 42/209 (20%), Positives = 77/209 (36%), Gaps = 11/209 (5%) Query: 80 ERLVDIGQHVEKGQLLARIDDVEQRANMRVAQASMDAAEAQLVQADANFKRQQALLKQGF 139 RL D + K +A+ +EQ A + ++QL Q ++ + + Sbjct: 235 SRLDDFSSLLHKQ-AIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQL-V 292 Query: 140 TTRSQYDQADQALRTAQSALSSAQSQLGNARDELSYTELHAPVSGVVTARNIET-GQVVQ 198 T + + D+ LR + +L + + + APVS V + T G VV Sbjct: 293 TQLFKNEILDK-LRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVT 351 Query: 199 AAQTAFSIA-EDGSRDAIFDVQETLVNHARIGMGVTVALLADPSIEA---EGNIRELSP- 253 A+T I ED + + VQ + +G + + A P G ++ ++ Sbjct: 352 TAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLD 411 Query: 254 -VVDAQTGTV-RVKVGIAQATAQMALGAI 280 + D + G V V + I + I Sbjct: 412 AIEDQRLGLVFNVIISIEENCLSTGNKNI 440 Score = 45.2 bits (107), Expect = 3e-07 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 28/130 (21%) Query: 74 VNGQVVERLVDIGQHVEKGQLLARIDDVEQRANMRVAQASMDAAEAQLVQ---------- 123 N V E +V G+ V KG +L ++ + A+ Q+S+ A + + Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 124 -----------------ADANFKRQQALLKQGFTT-RSQYDQADQALRTAQSALSSAQSQ 165 ++ R +L+K+ F+T ++Q Q + L ++ + ++ Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLAR 222 Query: 166 LGNARDELSY 175 + + Sbjct: 223 INRYENLSRV 232
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 28.4 bits (63), Expect = 0.030 Identities = 33/179 (18%), Positives = 58/179 (32%), Gaps = 45/179 (25%) Query: 90 ASYGVGVGYRFNDMLRTDLTLDYF-RASINGRTNCPSYVKSSHGLNPVEDNCHYEDNSKA 148 G GY+ N + ++ D+ R G +Y + G+ +K Sbjct: 56 LGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAY--KAQGVQL---------TAKL 104 Query: 149 SVWTAMANAYVDLPRVGPLTPYLGAGIGAAYVKYDTWKTSEICPTCTLQSDKDGFDSWRF 208 P L Y +G + DT +S+ G + Sbjct: 105 G-----------YPITDDLDIY--TRLGGMVWRADT------------KSNVYGKNHDTG 139 Query: 209 AMALMA-GVSYDLTDQLKLDLGYRYLRVNGGNAYGYDEQDRQ------VINQYGQGAGA 260 + A GV Y +T ++ L Y++ N G+A+ + V ++GQG A Sbjct: 140 VSPVFAGGVEYAITPEIATRLEYQWTN-NIGDAHTIGTRPDNGMLSLGVSYRFGQGEAA 197
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 251 bits (643), Expect = 7e-83 Identities = 106/369 (28%), Positives = 168/369 (45%), Gaps = 22/369 (5%) Query: 19 TIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEAV 78 ++DL AL+ N S + R +VVKA+AYG G R+ A F + +L EA+ Sbjct: 8 SLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDG--FALLNLEEAI 65 Query: 79 ALKPFLKPDATLYVLNGLQPGTEAACAREG-ILPVLNSLEQVENWAALATRLGKKLPALL 137 L+ L +L G + + + ++S Q++ A RL L L Sbjct: 66 TLRERGWKGPIL-MLEGFFHAQDLEIYDQHRLTTCVHSNWQLK--ALQNARLKAPLDIYL 122 Query: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197 + ++GM+RLG + + + ++ + +SH A + P + +A++ Sbjct: 123 KVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISG--AMARIEQAA 180 Query: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257 L +L+NS T +FD RPGI LYG P + + + ++ L Sbjct: 181 EGLE-CRRSLSNSAATLWHPEAHFDWVRPGIILYGASP----------SGQWRDIANTGL 229 Query: 258 -PVLPLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSNKGAAFFG 316 PV+ LS+ +I V+ + G VGYGG Y A RI +A GYADG R Sbjct: 230 RPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVD 289 Query: 317 DTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCDTIPYEILTAL 376 R +G VSMD + +D+T P+ +G+ VEL G +++DVA T+ YE++ AL Sbjct: 290 GVRTMTVGTVSMDMLAVDLTPCPQA--GIGTPVELWGKEIKIDDVAAAAGTVGYELMCAL 347 Query: 377 GNRYARVYV 385 R V V Sbjct: 348 ALRVPVVTV 356
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 32.0 bits (72), Expect = 0.001 Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 88 SPAYRKFEAFMLQSFVQSMFTSDTTATFGKGIAGEYWKSMMAEAMANKMADGGGVGIARL 147 P R+ E +Q ++SM + + SM + +A +M G G+G+A + Sbjct: 34 RPVARQVEGMFVQMMLKSMRDALPKDGLFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEM 93 Query: 148 LEEQ 151 + +Q Sbjct: 94 MVKQ 97
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 82.5 bits (204), Expect = 5e-21 Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 4/203 (1%) Query: 17 LAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAGQPWTLFRL 76 R+ A + P +S +P +V+L +A+ +FA+ P + V W L Sbjct: 18 WPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALW----L 73 Query: 77 MVGEMFIGALIGILAHIYFWAQQFMANMMAMAVGYSGSPADSITENEPQATLATIVTFSA 136 V ++ IG +G F A + ++ + +G S + + LA I+ A Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 137 LFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLRIAAPFIVF 196 L LF + HL + L++++ +P+ G A + T A S FL L +A P I Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 197 AILVNFAIGLVNKLTPAIPVYFI 219 + +N A+GL+N++ P + ++ I Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVI 216
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.4 bits (81), Expect = 7e-04 Identities = 20/53 (37%), Positives = 29/53 (54%) Query: 309 VGIAVPRRQARQREADAAEAGKKQREAEEQERNSVKASLETNQIELCLGKQLS 361 I+ RQ+ +R+ DA+ KKQ E +E NS A+LE EL K+L+ Sbjct: 374 NKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLT 426 Score = 32.7 bits (74), Expect = 0.005 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Query: 316 RQARQREADAAEAGKKQREAEEQERNSVKASLETNQIELCLGKQLSARLIASQEE 370 RQ+ +R+ DA+ KKQ EAE Q+ E ++ + L L AS+E Sbjct: 346 RQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASR------QSLRRDLDASREA 394
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 56.7 bits (137), Expect = 1e-14 Identities = 23/73 (31%), Positives = 41/73 (56%) Query: 5 DALDIVNSAIWTVLTASGPAVLAAMLAGIGIALFQALTQIQEMTLTFVPKIIVIFVVLAL 64 D + N A++ VL SG + A + G+ + LFQ +TQ+QE TL F K++ + + L L Sbjct: 3 DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62 Query: 65 TAPFVGAQINAFT 77 + + G + ++ Sbjct: 63 LSGWYGEVLLSYG 75
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 81.5 bits (201), Expect = 1e-18 Identities = 105/554 (18%), Positives = 192/554 (34%), Gaps = 105/554 (18%) Query: 4 SSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRT---ASLVSGPYGSLYVG------ 54 SS + A S L A + S NIS A Y+R+T A S +VG Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 55 -ISRSADEAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQT 113 + R D + N+ + + +S + + + ++ + S + S + + D +LQT Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTS--TSSLATQMQDFFTSLQT 118 Query: 114 YAASPSNSALGDSVVSVAQSLRND--------------ADREIADSVANINDLLAKFEKA 159 ++ + A +++ ++ L N + I SV IN+ + Sbjct: 119 LVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASL 178 Query: 160 NQDV--VGGTRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETT 217 N + + G G ++ LDQRD L+ +L+ +G+ ++ I NG +L + + Sbjct: 179 NDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGS 238 Query: 218 ARKVTFEQSAVLTPGVAGKAVT----VDGVPLSHDTFDQPFGTGRLSGLLQLRDQM---- 269 T Q A + P A + T VDG + + ++ TG L G+L R Q Sbjct: 239 ----TARQLAAV-PSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQT 293 Query: 270 --QLDEIARGLVTVFAESDQTGSSPDQ---TGLFSWSGSPAIPGADLSAGIAGTIEVSVP 324 L ++A F + G + F+ G PA+ + G Sbjct: 294 RNTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFA-IGKPAVLQNTKNKGDVAIGATVTD 352 Query: 325 FIASEGGSALLLRDGGANGANYK--------YNVQGAAGFSDRLR-------ALNEAFSE 369 A + D D L A+N++F+ Sbjct: 353 ASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTL 412 Query: 370 PMVFDAAAGI-----------------------SSSSSLIGYSASSLGWLEGKRQKANSE 406 V DA + + +L+ ++S G + N Sbjct: 413 KPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSK--TVGGAKSFNDA 470 Query: 407 F-----------TYNGTVASQADFALSNAT-------GVDIDTEMALLLDLEHSYQASSR 448 + T ++ ++ + GV++D E L + Y A+++ Sbjct: 471 YASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQ 530 Query: 449 VLTTVSAMLDDLLN 462 VL T +A+ D L+N Sbjct: 531 VLQTANAIFDALIN 544
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.1 bits (96), Expect = 5e-06 Identities = 12/48 (25%), Positives = 27/48 (56%) Query: 329 IMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELMDVLVNLK 376 + + S ++ +E ++ Q+ Y AN++V QT + + D L+N++ Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 34.2 bits (78), Expect = 8e-04 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 9 TGVSGMNAQANRLSTVADNIANASTVGYKRAET 41 +SG+NA L+T ++NI++ + GY R T Sbjct: 6 NAMSGLNAAQAALNTASNNISSYNVAGYTRQTT 38
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.002 Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 10/148 (6%) Query: 2 IVVVDDRDMVTEGYSSWFGREGITTTGF-TPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60 I+V DD + + R G W+ + D++ + + E + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE--NA 62 Query: 61 HRLPARIRER-CKAPVIAVNDRPSLEHTLELFQFGVDDVVRKPVHVREILARI-NAIRRR 118 L RI++ PV+ ++ + + ++ + G D + KP + E++ I A+ Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 119 AGASATSGADGTQLGPIRVFSDGRDPQI 146 + D P+ GR + Sbjct: 123 KRRPSKLEDDSQDGMPLV----GRSAAM 146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.0 bits (78), Expect = 8e-04 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 2/97 (2%) Query: 163 RKLSAHDPMAHMLHALIAKIMATTESDSASQHLRQLMFNATRQAFHSTGESAPLHSLHDS 222 ++ + + + + S S + Q + RQ F S G++ P L+D Sbjct: 372 DVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDR 431 Query: 223 ASKRLQIVDLLIDRHLTETELSARWLATRLGISIRTL 259 ++ LI LT T + A LG++ TL Sbjct: 432 VLAEME--YPLILAALTATRGNQIKAADLLGLNRNTL 466