>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.037 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEANARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 61.6 bits (149), Expect = 3e-12 Identities = 54/286 (18%), Positives = 105/286 (36%) Query: 83 QENSKDNLTKEKDNLTKANTELTEKNKALTTEKDNLTTDLSNAKNQVIQANQEKDKLADK 142 Q ++ + + + D N L KN L+ L ++ A ++ K Sbjct: 48 QTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKS 107 Query: 143 NKELDAQVGLLKGQIKSLEQSQQALEKENAELTKANADLKTEKDKLTTDLSNAKNQVIQA 202 E +++ L+ + LE++ + + + L+ EK L ++ + + A Sbjct: 108 LSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGA 167 Query: 203 NQEKDKLADKNKELDAQVGLLKGQIKSLEQSQQVLENEKAELTNKITDLSKEKENLTKEK 262 + K K L+A+ L+ + LE++ + N + KI L EK L K Sbjct: 168 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARK 227 Query: 263 ENLAKEKDNLTTDLSNAKSQVIQANQEKDKLADKNKELDAQVGLLKGQIKSLEQSQQALK 322 +L K + + +++ EK L + EL+ + + + L+ Sbjct: 228 ADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLE 287 Query: 323 NEKDELLREKDNLTTEKDNLTKEKTELTEKNQKLTTEKAELEQKHA 368 EK L EK +L + L + L K +LE +H Sbjct: 288 AEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQ 333 Score = 59.3 bits (143), Expect = 2e-11 Identities = 54/296 (18%), Positives = 108/296 (36%) Query: 78 SSNDTQENSKDNLTKEKDNLTKANTELTEKNKALTTEKDNLTTDLSNAKNQVIQANQEKD 137 +N ++ D LT+E N + + + ++ L ++ + + A Sbjct: 78 FNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFST 137 Query: 138 KLADKNKELDAQVGLLKGQIKSLEQSQQALEKENAELTKANADLKTEKDKLTTDLSNAKN 197 + K K L+A+ L + LE++ + + + L+ EK L + + Sbjct: 138 ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 197 Query: 198 QVIQANQEKDKLADKNKELDAQVGLLKGQIKSLEQSQQVLENEKAELTNKITDLSKEKEN 257 + A + K K L+A+ L + LE++ + N + KI L EK Sbjct: 198 ALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 257 Query: 258 LTKEKENLAKEKDNLTTDLSNAKSQVIQANQEKDKLADKNKELDAQVGLLKGQIKSLEQS 317 L + L K + + +++ EK L + +L+ Q +L +SL + Sbjct: 258 LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRD 317 Query: 318 QQALKNEKDELLREKDNLTTEKDNLTKEKTELTEKNQKLTTEKAELEQKHAPYKKL 373 A + K +L E L + + L K +LE +H ++ Sbjct: 318 LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQ 373 Score = 32.7 bits (74), Expect = 0.003 Identities = 44/263 (16%), Positives = 102/263 (38%), Gaps = 2/263 (0%) Query: 8 ENTNTEKNTNISNTTASTPPPNNEESLNNNKELLKSLKELTDRFKKLEVQLEDLEPLIKI 67 + + T +L K+L+ + +++ LE Sbjct: 198 ALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 257 Query: 68 SRFIGSFFKKSSNDTQENSKDNLTKEKDNLTKANTELTEKNKALTTEKDNLTTDLSNAKN 127 + +K+ S + + L L + L + L + + + Sbjct: 258 LEARQAELEKALEGAMNFST-ADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRR 316 Query: 128 QVIQANQEKDKLADKNKELDAQVGLLKGQIKSLEQSQQALEKENAELTKANADLKTEKDK 187 + + + K +L ++++L+ Q + + +SL + A + +L + L+ + Sbjct: 317 DLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKI 376 Query: 188 LTTDLSNAKNQVIQANQEKDKLADKNKELDAQVGLLKGQIKSLEQSQQVLENEKAELTNK 247 + + + + + K ++ +E ++++ L+ K LE+S+++ E EKAEL K Sbjct: 377 SEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAK 436 Query: 248 ITDLSK-EKENLTKEKENLAKEK 269 + +K KE L K+ E LAK + Sbjct: 437 LEAEAKALKEKLAKQAEELAKLR 459
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 55.1 bits (132), Expect = 1e-10 Identities = 49/301 (16%), Positives = 92/301 (30%), Gaps = 3/301 (0%) Query: 13 QVREELEARISELEDENENLTDENTRLLASKEWLTKENENLAVKISELENSNDQLWQARE 72 + ++++ + EN L L+ N+ L EL + Sbjct: 43 VATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLR 102 Query: 73 KLKTENAELLREKDNLAKENTRLLASKEWLTTEKIELIETNQNLAKANTELTKANADLTE 132 K +E + L L + E + L L ADL + Sbjct: 103 KNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEK 162 Query: 133 KNQKLTTEKIELIETNQKLTKEKTELTEKNKTLTKEKDNLTKANADLKTEKDKINHQVIA 192 + + L EK L + L K + + + + + A Sbjct: 163 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 222 Query: 193 LTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNNQLLQA 252 L + L++ + LE + L + +LE A + N + Sbjct: 223 LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 282 Query: 253 KEKIAEEKIELEREMARLKSLESTDKSELDLQNRRF---KSAIEDLKRQNRKLEEENMAL 309 + + EK LE E A L+ + R + A + L+ +++KLEE+N Sbjct: 283 IKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS 342 Query: 310 K 310 + Sbjct: 343 E 343 Score = 42.4 bits (99), Expect = 1e-06 Identities = 53/259 (20%), Positives = 88/259 (33%) Query: 13 QVREELEARISELEDENENLTDENTRLLASKEWLTKENENLAVKISELENSNDQLWQARE 72 + E + + + L E L A K L K E + L + Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 186 Query: 73 KLKTENAELLREKDNLAKENTRLLASKEWLTTEKIELIETNQNLAKANTELTKANADLTE 132 L+ AEL + + +T A + L EK L +L KA + + Sbjct: 187 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSA 246 Query: 133 KNQKLTTEKIELIETNQKLTKEKTELTEKNKTLTKEKDNLTKANADLKTEKDKINHQVIA 192 K + L EK L +L K + + + L A L+ EK + HQ Sbjct: 247 KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQV 306 Query: 193 LTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNNQLLQA 252 L + SL+++ ++A LE LE+ N+ + L + QL Sbjct: 307 LNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAE 366 Query: 253 KEKIAEEKIELEREMARLK 271 +K+ E+ E L+ Sbjct: 367 HQKLEEQNKISEASRQSLR 385
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1045 bits (2703), Expect = 0.0 Identities = 354/569 (62%), Positives = 443/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGNAS +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.9 bits (90), Expect = 9e-05 Identities = 55/369 (14%), Positives = 126/369 (34%), Gaps = 13/369 (3%) Query: 48 TNNSKESVLKESDQASQQQQAQKTATNDSTQASTAENTATTDNTTATTDKTYTDTKNNDT 107 N + + E + + + + S ++ + A +K N T Sbjct: 79 NNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQEL-EARKADLEKALEGAMNFST 137 Query: 108 AVVDAAQQVESDNSAVQTAEKALEKAVDQVKADANATDFDETKFTADQAAEQKAETALKN 167 A + +E++ +A+ + LEKA++ + A A++AA + + L+ Sbjct: 138 ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 197 Query: 168 AEDKLNTDQQTLETDLQQ-----QASQQQQAKTTATNDSTQASTAENTATTDNTTATTDK 222 A + ++ A ++A + + ++A A Sbjct: 198 ALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 257 Query: 223 TYENSPDTTVA-----GAAKQVVADETTVQQDETALKNAVEKVQQDADVSATDFDETKFT 277 + A + A T++ ++ AL+ ++ + V + + Sbjct: 258 LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLR-- 315 Query: 278 ADQAAEQKAETALKNAEDKLTTDQQTLETDLQQQAQTTATNDSTQAQTLENTAKTDSTTA 337 D A ++A+ L+ KL + E Q + + + Q K + Sbjct: 316 RDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNK 375 Query: 338 TTDETYTNTKNNDTAVVDAAQQVESDNSAVQTAEKALEKAVDQVKADANATDFDETKFTA 397 ++ + + + + A +A +QVE + ALEK +++ T+ ++ + A Sbjct: 376 ISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQA 435 Query: 398 DQAAEQKAE 406 AE KA Sbjct: 436 KLEAEAKAL 444
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.5 bits (76), Expect = 0.004 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 14/172 (8%) Query: 2 KKKANEEKAPKRAKQEAKTEAAQENKA--KENNKAK-ESKTKESKIKEAKTKESKIKETK 58 +K + +E EA KA + N A+ S+TKE++ E K + KE K Sbjct: 1052 EKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Query: 59 AK--------EPVPVKKLSFNEALEELF---ANSLSDCVSYESIIQISAKVPTLAQVKKI 107 AK P ++S + E A + +I + ++ T A ++ Sbjct: 1112 AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171 Query: 108 KELCQKYQKKLVSSSEYAKKLNAIDKIKKTEEKQKVLDEELEDGYDFLKEKD 159 + ++ V+ S N++ + + + + K + Sbjct: 1172 AKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223 Score = 33.5 bits (76), Expect = 0.004 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 11/71 (15%) Query: 8 EKAPKRAKQEAKTEAAQENKAKE-----NNKAKESK------TKESKIKEAKTKESKIKE 56 E + +KQE+KT E A E AKE+K T+ +++ ++ ++ + + Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 57 TKAKEPVPVKK 67 T+ KE V+K Sbjct: 1098 TETKETATVEK 1108
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.011 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 10/124 (8%) Query: 84 SKQESDLDKVADNVKKQESDAFKMPTQTNQTQTEMKTTEETQET-KKELKAVESTGAQKE 142 + ++ V K+ K TQTN+ T+ETQ T KE VE K Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV 1114 Query: 143 SQAVAKKEPPHKKPKVMPKD------KANGDKANKDKAKHATKEPKAK--KEAHKEVPKK 194 + +E P +V PK + + A ++ KEP+++ A E P K Sbjct: 1115 -ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAK 1173 Query: 195 ANSK 198 S Sbjct: 1174 ETSS 1177
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 59.3 bits (143), Expect = 2e-12 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELDSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKLLYDSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 45.2 bits (107), Expect = 3e-07 Identities = 54/271 (19%), Positives = 102/271 (37%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLICYFD 87 L+ S +T H L + LM + L LS + +S A+ + I Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKENKRALVGGFIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + ++RA GF+ + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLIGLKN-HSLRKKSIKKEESAFKIPFHL----- 200 + ++ + + F+ L H ++ +++E F Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLISCALNAIGFLPHTLFWVDYLIRHLNISPAIAGTSWALFG-FGATLGSLISGP 256 L+ + + +G +P L WV + + G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILVLKSIACFLPIFFHQI 287 +A +LG + A + ++ L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 65.1 bits (158), Expect = 3e-13 Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 25/268 (9%) Query: 173 EIKEEVKETPQEEEKPKEDEIQESETQKSEEV--PKELETQEELEIPKEETQEQAKEQEP 230 E + + +T S +EE+ E ET E E Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 231 IKEETQE-------EVKEEMQEVKEEKQEKTQDSPSVQELEAMQELVKEIQENSNSQEDK 283 + +T E E + +EV +E + + + E+ KE Q + Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 284 KETQESAETPQETEKQELETPQENAETPQEKTQENTETPQENPETPQEETQEKKAQEDHY 343 E +E A+ ETEK + E P+ ++ ++ Q T PQ P + T Sbjct: 1106 VEKEEKAKV--ETEKTQ-EVPKVTSQVSPKQEQSETVQPQAEPARENDPT---------- 1152 Query: 344 ESIEDIPEPVMAQAMGEALPFLNESVAKTPNNENDTKTPKESVIKTPQEKEGSDKASSPL 403 +I++ A E S + P E+ T SV++ P+ + Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP--- 1209 Query: 404 ELRLNLQDLLKSLNQESLKSLLENKTLS 431 + + K+ ++ S++S+ N + Sbjct: 1210 TVNSESSNKPKNRHRRSVRSVPHNVEPA 1237 Score = 63.5 bits (154), Expect = 1e-12 Identities = 49/214 (22%), Positives = 74/214 (34%), Gaps = 25/214 (11%) Query: 162 LPTLNDQEVKEEIKEEVKETPQEEEKPKEDEIQESETQKSE--EVPKELETQE--ELEIP 217 P+ + V E K+E K + E+ E Q E K V +T E + Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 218 KEETQEQAKEQEPI--KEETQEEVKEEMQEV---------KEEKQEKTQDSPSVQELEAM 266 +ETQ ++ KEE + E+ QEV K+E+ E Q Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Query: 267 QELVKEIQENSNSQEDK---KETQESAETPQETEKQELETPQENAETPQEKTQENTETPQ 323 +KE Q +N+ D + S TE + T E P+ T T+ P Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQ-PT 1210 Query: 324 ENPETPQEETQEKKAQEDHYESIEDIPEPVMAQA 357 N E+ K + H S+ +P V Sbjct: 1211 VNSES------SNKPKNRHRRSVRSVPHNVEPAT 1238 Score = 46.2 bits (109), Expect = 2e-07 Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 10/175 (5%) Query: 152 QEEPNNEEQLLPTLNDQEVKEEIKEEVKETPQE-----EEKPKEDEIQESETQKSEEVPK 206 E + E +E+ K E ++T + + PK++ Q Q E + Sbjct: 1090 SETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQE--QSETVQPQAEPAR 1147 Query: 207 ELETQEELEIPKEETQEQAKEQEPIKEETQEEVKEEMQEVKEEKQEKTQDSPSVQELEAM 266 E + ++ P+ +T A ++P KE + + + ++P Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Query: 267 QELVKEIQENSNSQEDKKETQESAETPQETEKQELETPQENAETPQEKTQENTET 321 Q V N ++ + P E + + + T NT Sbjct: 1208 QPTVNSESSNKPKNRHRRSVR---SVPHNVEPATTSSNDRSTVALCDLTSTNTNA 1259
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 191 bits (487), Expect = 2e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.7 bits (87), Expect = 2e-04 Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 7/191 (3%) Query: 477 KEQNKANENAQQETK----NSQAQETTSSQAYESVSQA--NTQATAQANESIKPQTNNTE 530 + EN++QE+K N Q T++Q E +A N +A Q NE + + E Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 531 TQQENAKESQAIE-QNRATQEPHAKEEPKKVSHPDEPWLDYDPKTHAGLKERQENQEKTP 589 TQ KE+ +E + +A E +E KV+ P + + +EN Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 590 SKGNDEPWIEFAKLEQARAKSHYQAMVEKEKAKQLAQQNAKNTNSINTPNKEVEIIDYGY 649 K A EQ ++ ++ + N+ N NT + Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSE 1214 Query: 650 TQSAPAKNRRR 660 + + P RR Sbjct: 1215 SSNKPKNRHRR 1225
>adhesinb#Adhesin B signature. Length = 310 Score = 27.5 bits (61), Expect = 0.040 Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Query: 147 PTLKERKALIDFIKENNPSDKITLLESSLSERIVYKRSVSEGLGV 191 T + K L++ +++ +ESS+ +R + ++VS+ + Sbjct: 232 GTPDQIKTLVEKLRKTKV--PSLFVESSVDDRPM--KTVSKDTNI 272
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 33.1 bits (75), Expect = 0.004 Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 19/205 (9%) Query: 530 EDAEIVSKEVGEFTRQSKNYSTEKGQLV---------FGGSSSYSHEGRNLLTAQDIMNI 580 ++AE K E ++ K EK + ++ S E + + AQ ++ Sbjct: 141 KEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSA 200 Query: 581 ESDEVIVIVTGAKATPLKLKANYWFKDKELLKRANLPIDLEVERRRVEEPTQPTTEITTP 640 EV+ + K +L ++ +D E+ A +L + +E + +++ Sbjct: 201 AQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELDELVKKLSPR 260 Query: 641 PNQN-------KANLDQSNKGENTENKDNESKTNENNPTIPQKE---SENSNLTESEKDH 690 N +A + G+ E K + +E + + + S + Sbjct: 261 ANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRINADITQIQKAISQVSNNRN 320 Query: 691 ENPTTSQEKSKNENTEQENDETDEI 715 E +N Q N +I Sbjct: 321 AGIARVHEAEENLKKAQNNLLNSQI 345
>cloacin#Cloacin signature. Length = 551 Score = 36.6 bits (84), Expect = 3e-04 Identities = 30/113 (26%), Positives = 38/113 (33%), Gaps = 30/113 (26%) Query: 150 IAGSDGSSGANGSNGANGSSGAN---GSNGANGSNGTNSYQGVGSNPFPPIAGSGSGSSG 206 ++G DG G N S+ N G G G + G S P GSGSG Sbjct: 1 MSGGDG----RGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG--- 53 Query: 207 SSNSGYTPFISEGGGIGSMGGGFIPFPYSPGLQNGSGANGSNGTSGANGSNSA 259 I GGG G GG + G +GT G + +A Sbjct: 54 ---------IHWGGGSGHGNGG-----------GNGNSGGGSGTGGNLSAVAA 86 Score = 36.2 bits (83), Expect = 5e-04 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 3/81 (3%) Query: 133 NGKGFSGSGTSGTST--NGIAGSDGSSGANGSNGANGSSGANGSNGANGSNGTNSYQGVG 190 G GSG S + G +GS G +G NG N G+ ++ Sbjct: 30 GGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG-NGGGNGNSGGGSGTGGNLSAVAAPV 88 Query: 191 SNPFPPIAGSGSGSSGSSNSG 211 + FP ++ G+G S S Sbjct: 89 AFGFPALSTPGAGGLAVSISA 109 Score = 35.1 bits (80), Expect = 0.001 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Query: 133 NGKGFSGSGT-SGTSTNGIAGSDGSSGANGSNGANGSSGANGSNGANGSNGTNSYQGVGS 191 N S SG +G T G S G+ S+ N G +GS G + G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69 Query: 192 NPFPPIAGSGSGSSGSSNSGYTP 214 N +G GSG+ G+ ++ P Sbjct: 70 N-----SGGGSGTGGNLSAVAAP 87 Score = 33.1 bits (75), Expect = 0.004 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 9/89 (10%) Query: 140 SGTSGTSTNGIAGSDGSSGANGSNGANGSSGANGSNGANGSNGTNSYQGVGSNPFPPIAG 199 SG G N A S + G G GA+ +G + N G GS G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG-GGSGSGI-HWGGG 59 Query: 200 SGSGSSGSSNSGYTPFISEGGGIGSMGGG 228 SG G+ G + + GGG G+ G Sbjct: 60 SGHGNGGGNGNS-------GGGSGTGGNL 81 Score = 31.2 bits (70), Expect = 0.018 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 2/82 (2%) Query: 130 SSKNGKGFSGSGTSGTSTNGIAGSDGSSGANGSNGANGSSGANGSNGANGSNGTNSYQGV 189 S +G+G + G TS N G G G++ +G S N G +G + G Sbjct: 2 SGGDGRGHNT-GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 190 GSNPFPPIAGSGSGSSGSSNSG 211 G SG G SG+ + Sbjct: 61 GHGNGGGNGNSG-GGSGTGGNL 81
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 88.7 bits (220), Expect = 1e-22 Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 15/217 (6%) Query: 119 ESFKKDELDLSSVFEIQRKNTQMAYRLAIGGLIGVISLSVALAFLMPLKQIEPYFVDFAN 178 F++ ++ ++A+ +A + VA+A L PLK +EPY + Sbjct: 12 AYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDR 71 Query: 179 SDKHFAVVQ--KADTKINYGEAFSRNLVGSYIMGRETINHIDDKIRLNETIREQSSDEVW 236 + ++ D I Y EA + + +Y+ RE + + + S+ Sbjct: 72 NTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYF-DAVMVMSARPEQ 130 Query: 237 KTLEQLVSGKG-----SIYSNSNMDREIKIINISIYKQGKQQNIAVADIMAKVFDKGYLI 291 + +I +N D ++I +S Q V V Sbjct: 131 DRWSRFYKTDNPQSPQNILANRT-DVFVEIKRVSFLGGNVAQ---VYFTKESVTGSN--S 184 Query: 292 SEKRYRVSLIYHFKPLIQFDYNSMPKNPTGFMVDKYS 328 ++ ++ Y + + KNP G+ V+ Y Sbjct: 185 TKTDAVATIKYKVDGTPSKEVDRF-KNPLGYQVESYR 220
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 196 bits (500), Expect = 6e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPINPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 256 bits (655), Expect = 8e-88 Identities = 61/266 (22%), Positives = 115/266 (43%), Gaps = 38/266 (14%) Query: 18 KTLIALGLSSVLVGCAIKPVAEVKPQNQQEKPIQVNEKIQTTQKVTPLNFNYSLHVAQAA 77 K L+ + ++LVGC+ I+T + LN+ + A Sbjct: 14 KCLLGASVVALLVGCS-------------------PHIIETNEVALKLNY-HPASEKVQA 53 Query: 78 QNYRLIGILAPRIQVSDNL-KPYIDKFQDALINQIQTIFEKRGYQTLFF--KDESALTLQ 134 + + I +L P Q SDN+ K Y +KF++ +++ I + +GY+ + D+ + Sbjct: 54 LDEK-ILLLRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQGYKVINVDSSDKDDFSFA 112 Query: 135 DKRKLFAVLDVKGWVGILEDLKMNLKDPNNTNALTTQ----------SSGSVWFSFYEPE 184 K++ + + + G + + D K ++ + L + +G V + EP Sbjct: 113 QKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFVKVTILEPM 172 Query: 185 SYRVISDFNVGLG--DFQAIVRAYNNNHSLGFNLKNNLFAGLEKNKQDAIHQILNKIYAL 242 S + F + L D Q + S L + + G + N DAI LNKI+A Sbjct: 173 SGESLDSFTMDLSELDIQEKFLKTTH-SSHSGGLVSTMVKGTD-NSNDAIKSALNKIFAN 230 Query: 243 IMKKAVTELTEKNISQYKEAIDKMKG 268 IM++ +LT+KN+ Y++ ++KG Sbjct: 231 IMQEIDKKLTQKNLESYQKDAKELKG 256
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 27.2 bits (60), Expect = 0.015 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 11 VVLCGAMANTAIADPRIEARGELGKLIGGGVGGFVGDKIGGAIGVPGGPVGIGFGRFVG 69 +++ G + D ++ G G GG D++ + GG GI G +G Sbjct: 198 ILIEGLIFEVQQGDA-LDFSFAAGSQRGTVAGGVNTDRLTSVLSSAGGSFGIFNGDVLG 255
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (708), Expect = 2e-96 Identities = 113/245 (46%), Positives = 162/245 (66%), Gaps = 2/245 (0%) Query: 1 MRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.021 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 18/79 (22%) Query: 501 SKPKPTTETTAET--KENDTKEAVEKETKEIK----------------ENDTKEAVEKKA 542 + P TTET AE +E+ T E E++ E T E + + Sbjct: 1031 ATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGS 1090 Query: 543 KEKEVQETQPKETPTALQE 561 + KE Q T+ KET T +E Sbjct: 1091 ETKETQTTETKETATVEKE 1109 Score = 30.4 bits (68), Expect = 0.025 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%) Query: 481 ALKNQNKSALEVVKEFKFPYSKPKPTTETTAETKENDTKEAVEKETKEIKENDTKEAVEK 540 + A E K + ++ +ETKE T E E T E KE K EK Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNE-VAQSGSETKETQTTETKETATVE-KEEKAKVETEK 1118 Query: 541 KAKEKEVQ-ETQPKE 554 + +V + PK+ Sbjct: 1119 TQEVPKVTSQVSPKQ 1133
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 7e-06 Identities = 13/49 (26%), Positives = 27/49 (55%) Query: 669 SISGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLK 717 +S + S V+L NL Q+ + AN++ + T++ I + L+N++ Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 39.2 bits (91), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.8 bits (66), Expect = 0.019 Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 309 EEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEIL 345 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVL 224
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 1863 bits (4827), Expect = 0.0 Identities = 1049/1333 (78%), Positives = 1137/1333 (85%), Gaps = 70/1333 (5%) Query: 1 MELQQTHRKINRPIISLALVGALIGTELGANTPNDPIHSESRAFFTTVLIPAIVGGIATG 60 ME+QQTHRKINRP++SLALVGAL+ TP AFFTTV+IPAIVGGIATG Sbjct: 1 MEIQQTHRKINRPLVSLALVGALVSI-----TP----QQSHAAFFTTVIIPAIVGGIATG 51 Query: 61 TAVGTVSGLLSWGLKQAEQANKTPDKPDKVWRIQAGRGFNNFPNKQYDLYKSLLSSKIDG 120 AVGTVSGLL WGLKQAE+ANKTPDKPDKVWRIQAG+GFN FPNK+YDLYKSLLSSKIDG Sbjct: 52 AAVGTVSGLLGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLYKSLLSSKIDG 111 Query: 121 GWDWGNAARHYWVKDGQWNKLEVGMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFN 180 GWDWGNAARHYWVKDGQWNKLEV MQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFN Sbjct: 112 GWDWGNAARHYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFN 171 Query: 181 GNSFTSFKDSADRTTRVNFDAKNILIDNFLEINNRVGSGAGRKASSTVLTLKSSEKITSR 240 GNSFTS+KDSADRTTRV+F+AKNILIDNFLEINNRVGSGAGRKASSTVLTL++SE ITSR Sbjct: 172 GNSFTSYKDSADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSR 231 Query: 241 ENAEISLYDGATLNLVSSSNHSVDLYGKVWMGRLQYVGAYLAPSYSTINTSKVVGEMNFR 300 ENAEISLYDGATLNL S+S V L G VWMGRLQYVGAYLAPSYSTINTSKV GE+NF Sbjct: 232 ENAEISLYDGATLNLASNS---VKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFN 288 Query: 301 HLAVGDQNAAQAGIIANKKTNIGVLDLWQSAGLSIIAPPEGGYESKTKD----------- 349 HL VGD NAAQAGIIA+ KT+IG LDLWQSAGL+IIAPPEGGY+ K D Sbjct: 289 HLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNNAK 348 Query: 350 ----------------NPKNDTQKTEIQPTQVIDGPFAGAKDTVVNIFRLNTKSDGTLKA 393 NP N QKTEIQPTQVIDGPFAG K+TVVNI R+NT +DGT++ Sbjct: 349 NDKQESSQNNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRV 408 Query: 394 GGFKASLSTNAAHLNIGEGGINLSNQASGRSLLVENLTGNITVEGALRVNNQVGGSAVAG 453 GGFKASL+TNAAHL+IG+GGINLSNQASGRSLLVENLTGNITV+G LRVNNQVGG A+AG Sbjct: 409 GGFKASLTTNAAHLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAG 468 Query: 454 SSANFEFKAGEDTNNATATFNNDIHLGKAVNLRVDAHTAYFNGNIYLGKSTNLKVNGHSA 513 SSANFEFKAG DT N TATFNNDI LG+ VNL+VDAHTA Sbjct: 469 SSANFEFKAGTDTKNGTATFNNDISLGRFVNLKVDAHTA--------------------- 507 Query: 514 HFKNIDASKSDNGLNTSALDLSGVTDKVNINKLTTAATNVSIKNFDIKELVVTTRVQSFG 573 +FK ID + G NT LD SGVT+KVNINKL TA+TNV++KNF+I ELVV T S G Sbjct: 508 NFKGIDTG--NGGFNT--LDFSGVTNKVNINKLITASTNVAVKNFNINELVVKTNGVSVG 563 Query: 574 QYTIFGENIGDKSRIGVVSLQTGYSPAYSGGVTFKSGKKLVIDEIYHAPWNYFDARNVTD 633 +YT F E+IG +SRI V L+TG YSGGV FK G+KLVI++ Y+APWNYFDARN+ + Sbjct: 564 EYTHFSEDIGSQSRINTVRLETGTRSIYSGGVKFKGGEKLVINDFYYAPWNYFDARNIKN 623 Query: 634 VEINKKILFGAPGYIAGKTGLMFNNLTLNSNASMDYGKDLDLTIQGHFTNNQGVMNLFVQ 693 VEI K+ FG G G LMFNNLTL NA MDY + +LTIQG F NNQG +N V+ Sbjct: 624 VEITNKLAFGPQGSPWGTAKLMFNNLTLGQNAVMDYSQFSNLTIQGDFVNNQGTINYLVR 683 Query: 694 DGRVATLNAGHQASMIFNNVVDSATGFYQPLIKINNAQNLTKNKEHVLVKARNIDYNLVG 753 G+VATLN G+ A+M F+N VDSATGFYQPL+KIN+AQ+L KNKEHVL+KA+ I Y G Sbjct: 684 GGQVATLNVGNAAAMFFSNNVDSATGFYQPLMKINSAQDLIKNKEHVLLKAKIIGY---G 740 Query: 754 VQGASYDNISASNTNLMEQFKERLALYNNNNRMDICVVRNTDDIKACGMAIGNQAMVNNP 813 A D+I+ N NL+EQFKERLALYNNNNRMDICVVRNTDDIKACG AIGNQ+MVNNP Sbjct: 741 NVSAGTDSIA--NVNLIEQFKERLALYNNNNRMDICVVRNTDDIKACGTAIGNQSMVNNP 798 Query: 814 DSYKYLIGKAWKNTGISKTANNTTIAVNLGKNSTPTENGGNTTDLPKNTTNKARFASYAL 873 ++YKYL GKAWKN GISKTAN + I+V+ NSTPTENGGNTT+LP NTTNK RFASYAL Sbjct: 799 ENYKYLEGKAWKNIGISKTANGSKISVHYLGNSTPTENGGNTTNLPTNTTNKVRFASYAL 858 Query: 874 IKNAPFAHYNATPNLVAINKHDFGTIESVFELANRSKDIDTLYASSGAQGRDLLQTLLID 933 IKNAPFA Y+ATPNLVAIN+HDFGTIESVFELANRS DIDTLYA+SGAQGRDLLQTLLID Sbjct: 859 IKNAPFARYSATPNLVAINQHDFGTIESVFELANRSNDIDTLYANSGAQGRDLLQTLLID 918 Query: 934 SHNAGYARTMIDATSANEITKQLNEANSALNDIASLDHKTSSLQTLSLSNAMILNSRLVN 993 SH+AGYARTMIDATSANEITKQLN A + LN+IASL+HKTS LQTLSLSNAMILNSRLVN Sbjct: 919 SHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVN 978 Query: 994 LSRRHTNNIDSFAKRLQALKGQRFASLESAAEVLYQFAPKYEKPTNVWANAIGGASLNNG 1053 LSRRHTN+IDSFAKRLQALK QRFASLESAAEVLYQFAPKYEKPTNVWANAIGG SLN+G Sbjct: 979 LSRRHTNHIDSFAKRLQALKDQRFASLESAAEVLYQFAPKYEKPTNVWANAIGGTSLNSG 1038 Query: 1054 GNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFNNQANSLNSGANNTNFGVYSRIFAN 1113 GNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSF+NQANSLNSGANNTNFGVYSRIFAN Sbjct: 1039 GNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGANNTNFGVYSRIFAN 1098 Query: 1114 QHEFDFEAQGAIGSDQSSLNFKSALLQDLNQSYNYLAYSAAARASYGYDFAFFRNALVLK 1173 QHEFDFEAQGA+GSDQSSLNFKSALL+DLNQSYNYLAYSAA RASYGYDFAFFRNALVLK Sbjct: 1099 QHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASYGYDFAFFRNALVLK 1158 Query: 1174 PSVGVSYNHLGSTNFESNS-QLVALKNGASSQHLFNASANVEARYYYGDTSYFYMNAGVL 1232 PSVGVSYNHLGSTNF+SNS Q VALKNGASSQHLFNASANVEARYYYGDTSYFYMNAGVL Sbjct: 1159 PSVGVSYNHLGSTNFKSNSNQKVALKNGASSQHLFNASANVEARYYYGDTSYFYMNAGVL 1218 Query: 1233 QEFANFGSSNAVSLNTFRVNVARNPLNTHARVMMGGELQLAKEVFLNLGFIYAHNLISNA 1292 QEFANFGSSNAVSLNTF+VN RNPLNTHARVMMGGEL+LAKEVFLNLGF+Y HNLISN Sbjct: 1219 QEFANFGSSNAVSLNTFKVNATRNPLNTHARVMMGGELKLAKEVFLNLGFVYLHNLISNI 1278 Query: 1293 GHFASNLGMRYSF 1305 GHFASNLGMRYSF Sbjct: 1279 GHFASNLGMRYSF 1291
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 86.3 bits (213), Expect = 5e-22 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 12/243 (4%) Query: 1 MSEKKESQKVAIITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNNALC------E 54 M+ K K+A ITGA+ GIG A L QG + A+ + + ++L E Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 55 SIDVDVSDSNALKEAFLNISAKEDHCDVLINSAGYGVFGSVEDTPIDEVKKQFGVNFFAL 114 + DV DS A+ E I + D+L+N AG G + +E + F VN + Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 115 CEVVQFCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNI 174 + + ++ I + S V + Y++SK A ++ L LEL +NI Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 175 QVCLIEPGPVKSNWEKTAFSVESFESENSLYALEVNAAKSFYSGV-YQKALSPKAVAQKI 233 + ++ PG +++ + + ++ EN + + ++F +G+ +K P +A + Sbjct: 181 RCNIVSPGSTETDMQWSLWA-----DENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAV 235 Query: 234 VFL 236 +FL Sbjct: 236 LFL 238
>SECA#SecA protein signature. Length = 901 Score = 29.5 bits (66), Expect = 0.003 Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 12/69 (17%) Query: 4 SPTKKDYTQYSEKQLFNLINQLEQKIKKMQNDRASFKEKMAKELEKRDQNFKDKIDALNE 63 S + + +++ N+IN +E +++K+ ++ EL+ + F+ +++ Sbjct: 12 SRNDRTLRRM--RKVVNIINAMEPEMEKLSDE----------ELKGKTAEFRARLEKGEV 59 Query: 64 LLQKISQAF 72 L I +AF Sbjct: 60 LENLIPEAF 68
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 40.9 bits (96), Expect = 8e-06 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 13/181 (7%) Query: 211 AASIATLSNDERELGVACVDIGGETCNITIYSGNSIRYNKYLPIGSHHLSTDLSSMLNTP 270 AA+I G VDIGG T + + S N + Y+ + IG + + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 271 F------PYAEEVKIKYGDLSFESGIETPSQSVQIPTTGSDGNESHVVPLSKIQNIMRDR 324 + AE +K + G S G E V+ + ++I +++ Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFQIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELAKAHFTNYPVRLAA-PM 380 + +++ E + G+VLTGG AL++ + L T PV +A P+ Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL-MEETGIPVVVAEDPL 322 Query: 381 E 381 Sbjct: 323 T 323
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 53.5 bits (128), Expect = 2e-09 Identities = 47/326 (14%), Positives = 111/326 (34%), Gaps = 13/326 (3%) Query: 3 ENEELELETKVAELDKRAAELNEREKQLNKRQKQLKTDIDAFNQKKEVYLKNQKEFEDFM 62 + + E + L + ++L+ K L +L ++ +K K+ E + Sbjct: 56 QERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKI 115 Query: 63 EDREVLEKELDQKVKENLRTYEKEQKELILERIRKQLQEQQESLNKDYGKKLENIKEHSD 122 ++ E + +L++ ++ + + ++ K +++ + + N Sbjct: 116 QELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 175 Query: 123 RLENDLKT----------QFDAQLERWEQNFKGYEQQLTGILNDKALLDLDKECFNAQKQ 172 L+ + + LE ++ + +KA L K + Sbjct: 176 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE 235 Query: 173 AFEKKMKQREEEIKKENRNEIERLNKEKNGLHRQLDEMADETSDLRQKNRELREKIGFQK 232 +IK E L + L + L+ + ++ K + L + Sbjct: 236 GAMNFSTADSAKIKTLEA-EKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKA-AL 293 Query: 233 DYDMEKLEEYNRVLEKCKEDLLAANENLKNKILELESEKNKLDP-RDERIKELEEKEREL 291 + + LE ++VL ++ L + + +LE+E KL+ + R+L Sbjct: 294 EAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDL 353 Query: 292 EGIRAQKEDAEQKCARLSAYNVSLEA 317 + R K+ E + +L N EA Sbjct: 354 DASREAKKQLEAEHQKLEEQNKISEA 379 Score = 39.7 bits (92), Expect = 3e-05 Identities = 53/293 (18%), Positives = 104/293 (35%), Gaps = 15/293 (5%) Query: 3 ENEELELETKVAELDKRAAELNEREKQLNKRQKQLKTDIDAFNQKKEVYLKNQKEFEDFM 62 E E+ L + A+L+K + + K L+ + A ++ K + +F Sbjct: 147 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 206 Query: 63 EDREVLEKEL-DQKVKENLRTYEKEQKELILERIRKQLQEQQESLNKDYGKKLENIKEHS 121 K L +K R + E+ + ++L + E Sbjct: 207 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 266 Query: 122 DRLE--NDLKTQFDAQLERWEQNFKGYEQQLTGILNDKALLDLDKECFNAQKQAFEKKMK 179 LE + T A+++ E E + + + +L+ +++ A + K Sbjct: 267 KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKK 326 Query: 180 QREEEIKKENRNEIERLNKEKNGLHRQLDEMADETSDLRQKNRELREKIGFQKDYDMEKL 239 Q E E +K + + + L R LD + L ++++L E+ + Sbjct: 327 QLEAEHQKL-EEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISE------- 378 Query: 240 EEYNRVLEKCKEDLLAANENLKNKILELESEKNKLDPRDERIKELEEKERELE 292 + + DL A+ E K LE +KL ++ KELEE ++ E Sbjct: 379 ----ASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTE 427 Score = 37.0 bits (85), Expect = 2e-04 Identities = 36/260 (13%), Positives = 84/260 (32%), Gaps = 7/260 (2%) Query: 74 QKVKENLRTYEKEQKELILE-RIRKQLQEQQESLNKDYGKKLENIKEHSDRLENDLKTQF 132 +KV+E +E E L L+ + + N + ++L N KE + + L + Sbjct: 53 EKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEK- 111 Query: 133 DAQLERWEQNFKGYEQQLTGILNDKALLDLDKECFNAQKQAFEKKMKQREEEIKKENRNE 192 ++++ E E+ L G +N + A+K A + E+ ++ N Sbjct: 112 ASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE-GAMNF 170 Query: 193 IERLNKEKNGLHRQLDEMADETSDLRQKNRELREKIGFQKDYDMEKLEEYNRVLEKCKED 252 + + L + + ++L + K++ Sbjct: 171 STADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADS----AKIKTLEAEKAALAAR 226 Query: 253 LLAANENLKNKILELESEKNKLDPRDERIKELEEKERELEGIRAQKEDAEQKCARLSAYN 312 + L+ + ++ K+ + LE ++ ELE + + Sbjct: 227 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 286 Query: 313 VSLEADLNILNERFENLKNI 332 + +A L E+ + Sbjct: 287 EAEKAALEAEKADLEHQSQV 306
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 119 bits (299), Expect = 4e-33 Identities = 62/341 (18%), Positives = 132/341 (38%), Gaps = 48/341 (14%) Query: 1 MALLFTGACGYIGSHTARAFLEKTKENIVIVDDLSTGF---LEHLKALEHYYPNRVVFVQ 57 M L TGA G+IG H ++ LE + +V +D+L+ + L+ + P F + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQ-VVGIDNLNDYYDVSLKQARLELLAQPG-FQFHK 58 Query: 58 ANLNETQKLDAFLNKQQLKDPIEAILHFGAKISVEESTRLPLEYYTNNTLNTLELVKLCL 117 +L + + + E + +++V S P Y +N L +++ C Sbjct: 59 IDLADREGMTDLFASGH----FERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR 114 Query: 118 KHAIKRFIFSSTAVVYGESDS-SLNEESPLN-PINPYGASKMMSERILLDTSKIADFNCV 175 + I+ +++S++ VYG + + + ++ P++ Y A+K +E + S + Sbjct: 115 HNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPAT 174 Query: 176 ILRYFNVAGACMHNNYTTPYTLGQRTLNATHLIKIACECAVGKRKKMGIFGTNYPTRDGT 235 LR+F V G + + + L GK ++ G Sbjct: 175 GLRFFTVYGPWGRPD-MALFKFTKAMLE-------------GKSID--VYN------YGK 212 Query: 236 CIRDYIHVDDLANAHLASYQTLLEKNKS---------------EIYNVGYNQGHSVKEVI 280 RD+ ++DD+A A + + + +YN+G + + + I Sbjct: 213 MKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYI 272 Query: 281 EKVKEISNNDFLVEILDKRQGDPASLIANNAKILQNTSFKP 321 + +++ + +L + GD A+ + + F P Sbjct: 273 QALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTP 313
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.9 bits (64), Expect = 0.011 Identities = 13/33 (39%), Positives = 22/33 (66%) Query: 80 IENIFANEKEDTTYIITSYLNKEELFEKKPELK 112 + N+ A+EK D ++++ L+ E FEK PE+K Sbjct: 314 VGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIK 346
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.3 bits (73), Expect = 0.002 Identities = 25/145 (17%), Positives = 49/145 (33%) Query: 27 GATKKELKQLQINSKNFSNILTKIHSQVEANTQAQEGLRSVYEGQANKIKDLNNAILSQE 86 K + ++ +A EG + + KIK L + E Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 87 ESLRALKALQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLV 146 L+ E N S ++ L E A + L+ Q++ ++ L +DL Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Query: 147 SQIALIQKALKEQEEKAEKSLKSNA 171 + ++ E ++ E++ S A Sbjct: 320 ASREAKKQLEAEHQKLEEQNKISEA 344
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 143 bits (363), Expect = 3e-44 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 26/172 (15%) Query: 22 NMDKETVAGDVSAKAVQSAPVSTETVQEKQEPKEEPKQEPAPVVEKKPAIESGTIIASIY 81 D ++ VS + Q P P PAP V+ K T+ + + Sbjct: 177 RPDNGMLSLGVSYRFGQGEAA----------PVVAPAPAPAPEVQTK----HFTLKSDVL 222 Query: 82 FDFDKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVK 138 F+F+K +K Q LD++ + V++ G TD GS YNQ L +R SV Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVV 282 Query: 139 NALVIKGVEKDMIKTISFGEIKPKCTQKT---------KECYKENRRVDVKL 181 + L+ KG+ D I GE P +C +RRV++++ Sbjct: 283 DYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.9 bits (64), Expect = 0.025 Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 6/123 (4%) Query: 60 EKKEEKVAEKVEEKKEEKKEEKKDEKVVEKNATDKEGDFIDPKEQEESLENIFSSL-NDF 118 E ++ + + E ++ + E + ++ LE N Sbjct: 182 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFS 241 Query: 119 QEKTDTNAQKDEQKNEQEEEQRRLKEQQRLRKNQKNQEM-----LKGLQQNLDQFAQKLE 173 + + +K E Q L++ N + L+ + L+ LE Sbjct: 242 TADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLE 301 Query: 174 SVK 176 Sbjct: 302 HQS 304
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 98.4 bits (245), Expect = 2e-26 Identities = 35/202 (17%), Positives = 75/202 (37%), Gaps = 18/202 (8%) Query: 94 AERKIGDWIFSSAVFFFALALIEAIIIICLLPLKEKVPYLVTFSNATQNFAIVQR--ADK 151 +K+ + A ALA + + L PLK PY++T T +I + D Sbjct: 30 RSKKLAWVV---AGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLHGDA 86 Query: 152 SIRANQALIRQLVASYVNNRE--NISNIKEQNEIAHETIRLQSAFEVWDFFEKLVSYEH- 208 +I ++A+ + +A+YV RE + +E + + + SA D + + ++ Sbjct: 87 TITYDEAVRKYFLATYVRYREGWIAAAREEY----FDAVMVMSARPEQDRWSRFYKTDNP 142 Query: 209 ----SIYTNINLTRKISIINIALISKTQANIEISAQLFNKEKLESEKRYRIIMTFEFEPI 264 +I N + I ++ + A + + + ++ + ++ + Sbjct: 143 QSPQNILAN-RTDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDAVATIKYKVDGT 200 Query: 265 EIDTKSVPLNPTGFIVTGYDVT 286 NP G+ V Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 28.4 bits (63), Expect = 0.049 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%) Query: 226 NTIKIHDAQIENSYPYVVRAATNNGIKGFI---IDDPTFANEK 265 I IH + N + V N ++ F+ I+D FAN+ Sbjct: 247 EVIGIHWGGVPNEFNGAVF--INENVRNFLKQNIEDIHFANDD 287
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (570), Expect = 3e-78 Identities = 64/148 (43%), Positives = 94/148 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLEMMQLATKGFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERLE + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 26.3 bits (58), Expect = 0.034 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 7 VHIHNLVFETILGILEFERLKPQKISVNLDLFYTELPN-----KAYLDYIKIQELIQKMM 61 +I +L+ E ++ + L+ + IS + + K Y + I +I KM+ Sbjct: 70 EYIEDLISEVLVSSVA---LENKFISQFILEAEIKTDFTINLLKDYFSSLTIDNMISKMI 126
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 3e-04 Identities = 9/51 (17%), Positives = 25/51 (49%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALQKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ +++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 112 bits (282), Expect = 6e-29 Identities = 73/361 (20%), Positives = 147/361 (40%), Gaps = 31/361 (8%) Query: 97 AKDLAYKSENFILRLEMIPKKANLMILDKEKCVIEA--FRFNDRVAKNDILGALPPN-TY 153 + ++ ++ +N + L + K + + I++ F FN N +G N Sbjct: 209 SSEICFRLKNNSIDLSLSNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMS 268 Query: 154 EHQEEDLDFKGLLDILEKDFLSYQYKE----LEHKKNHIIKRLNMQKERLKEKLEKLEDP 209 + + + + +LE +F Y K+ L+ K + + K + R +K + L + Sbjct: 269 KEDYKKIQYDSSSKLLE-NF--YYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNT 325 Query: 210 KNLQLEAKELQTQASLLLTYQHLINKHESRVVLKDFED---KECAIEIDKSMPLNAFINK 266 + + LL + + K S + L ++ I +D++ + + Sbjct: 326 LKKCEDKDIFKLYGELLTANIYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQS 385 Query: 267 KFTLSKKKKQKSQFLYLEEENLKEKIAFKENQINYVKGA---------KEESVLEMFM-- 315 + K K+ + + +E++ + + + + A K+E + ++ Sbjct: 386 YYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKF 445 Query: 316 -PVKNSKTKRPMSGYEVLYYKDFKIGLGKNQKENIKL-LQDARANDLWMHVRDIPGSHLI 373 + SK + + I +GKN +N L L+ A +D+W H ++IPGSH+I Sbjct: 446 KKIYKSKKSKTSKPMHFISKDGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVI 505 Query: 374 VFCQKNAPKDEVIMELAKMLIKMQKDVFNS-YEIDYTQRKFVKIIKGAN---VIYSKYRT 429 V + P + ++E A + K +S +DYT+ K VK GA VIYS +T Sbjct: 506 VKNIMDIP-ESTLLEAANLAAYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQT 564 Query: 430 I 430 I Sbjct: 565 I 565 Score = 35.6 bits (82), Expect = 4e-04 Identities = 20/104 (19%), Positives = 51/104 (49%), Gaps = 7/104 (6%) Query: 36 KEKHAFVVDLHA--PYIGLSKKPPESVLKNTLALDFCLSKFTKNAKILQANIIDNDRI-- 91 + ++ + P I L+ + +K + L K+ NAKI+ + I+ DRI Sbjct: 43 RLSFKLLISSSSNYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVV 101 Query: 92 LEITGAKDLAYKSENFILRLEMIPKKANLMILDK-EKCVIEAFR 134 ++ +L + S + L +E++ + +N+ ++ K + ++++ + Sbjct: 102 IDFESTDELGFNSI-YSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 25.2 bits (55), Expect = 0.029 Identities = 9/42 (21%), Positives = 18/42 (42%) Query: 25 ILGVMEELCDTLNDSLNFKKVVCMGIKVSIAFKFLIFCSQSF 66 + + L+D L K+++ GI ++ + F SF Sbjct: 61 TFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSF 102
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 31.8 bits (72), Expect = 0.032 Identities = 29/169 (17%), Positives = 61/169 (36%), Gaps = 22/169 (13%) Query: 118 RNKEFFSKEIEILTYTNSLEELKEQGLEIQLTHHHETHKKTLENGNEIAKEYDYLKDIYQ 177 R + L + K G E+ + + L+ G + +Y + Y Sbjct: 314 RCTKKDKILNNTLKKCEDKDIFKLYG-ELLTANIYA-----LKKGLSHIELANYYSENYD 367 Query: 178 EVERTRDGELVREIIPSISSTEYFKLYNKLPFESINNENTKLNTNNTIKNTIETNTSIGN 237 V+ T D PS + Y+K YNKL + ++ N + E + Sbjct: 368 TVKITLDENKT----PSQNVQSYYKKYNKL-------KKSEEAANEQLLQNEEELNYL-Y 415 Query: 238 NIIQNNDNNNPNLSIADLELEQQNLG----EQNGKERTNRADEPNRTRA 282 +++ N +N + I +++ E G ++ K + ++ +P + Sbjct: 416 SVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFIS 464 Score = 31.4 bits (71), Expect = 0.042 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 23/174 (13%) Query: 1106 YKYELQALEDKSLDLSQALNQAIEKLPKGVYQYHKTTLKTDALIIDANNERYQEIQKLIK 1165 K + L+ KS DL + + I + K + T K + + + ++ +L+ Sbjct: 290 AKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCE------DKDIFKLYGELLT 343 Query: 1166 ----NLERG-ELVKWDNLYFQLEQNNEMGIFLKPTKINSKVQDSRLKAYFKIKDALNDL- 1219 L++G ++ N Y E + + I L K S+ S K Y K+K + Sbjct: 344 ANIYALKKGLSHIELANYY--SENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAAN 401 Query: 1220 -----TSAELSPLSS---DLELESKRVRLNLVYDEFVKKFGYLNENKNRKDIKQ 1265 EL+ L S ++ + + E ++ GY+ K K K Sbjct: 402 EQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIET-GYIKFKKIYKSKKS 454
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 39.6 bits (92), Expect = 4e-05 Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 9/115 (7%) Query: 146 TNDPMYANTPFSNNPNSPNDNAINGKDGANGSNGYGINGNDGINGSSGSNGANGNNSNHN 205 N + P + AI GAN + + G N ++ + +S+ Sbjct: 232 NETGADYNGHYGGAPMIDDIAAIQRLYGANMTTR-TGDSVYGFNSNTDRDFYTATDSSKA 290 Query: 206 AVGS-----GIDTDGVLGVDG---VNGSSSSSGGSVGGYENNFTNHGSTNNNIGG 252 + S G DT G +N + S G N HG T N G Sbjct: 291 LIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENAIG 345
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 128 bits (324), Expect = 9e-39 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 6/203 (2%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTKN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVYI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIA-LSYLFDT 215 Q+ L + V I +A V + + + K +A + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST--KTDAVATIKYKVDG 199 Query: 216 PDFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 200 TPSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.5 bits (68), Expect = 0.010 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 10/96 (10%) Query: 171 IKENTLEKAPTNNKPLKEEKEET----KEKEEETITIGDNTNAMKIVKKDIQKGYRALKS 226 IK+ L N+ + E+ K +EE+ I D A+ + Q + ALK Sbjct: 340 IKQENLNTTAYINRVMMASNEQIINKEKIREEKQKIILDQAKAL-----ETQYVHNALKR 394 Query: 227 SQ-RKWYCLWICSKKSKLSLMPEEIFNDKQFTYFKF 261 + + Y + +K +MP EIF+D FTYF F Sbjct: 395 NPVPRNYNYYQAPEKRSKHIMPSEIFDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.5 bits (217), Expect = 2e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 49.8 bits (119), Expect = 5e-09 Identities = 51/346 (14%), Positives = 106/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFVMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYKMVAQVLDYKGAFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 149 bits (378), Expect = 3e-49 Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEGFADMFDDLAERIAQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER+ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.015 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 360 bits (926), Expect = e-126 Identities = 119/345 (34%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDVQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++DV +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIMVHPIVVTSQDITLKITKEPLDN--------SKNAQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.028 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.006 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEAF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 28.6 bits (64), Expect = 0.014 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 32 FVIVAWLFRF--KSIAFSILITLLVILVDIWVYSDVRQFLL-DTASSPILLLAALLIKW 87 V VA ++A +L +LV L I D+ + LL D + P LL LL Sbjct: 121 SVAVAMTLAPGWGTLAALLLTWVLVALTFI----DLDKMLLPDQLTLP-LLWGGLLFNL 174
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 551 bits (1422), Expect = 0.0 Identities = 178/582 (30%), Positives = 292/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKILKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL + + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GASKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQTIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFI 461 ++ +G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 349 bits (898), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDISKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 31.3 bits (71), Expect = 0.006 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 38.2 bits (88), Expect = 1e-05 Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 17/212 (8%) Query: 45 PNPEEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKI 103 P E + E +I+ + L L +LQMQ A E+ +A I + G+K Sbjct: 17 PPQAEFVPIVEPEETIIE---EAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQ 70 Query: 104 GFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSQDHLMALE----KELSAIAIDI 159 G++EG + L + E K+Q + + + + Q L AL+ L +A++ Sbjct: 71 GYQEG---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEA 127 Query: 160 AKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---K 216 A++VI + ++ + + + L + L + L+V+P D +++ L + + Sbjct: 128 ARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWR 187 Query: 217 LESNEAISKGGVMITSSNGSLDGNLMERFKTL 248 L + + GG +++ G LD ++ R++ L Sbjct: 188 LRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 142 bits (359), Expect = 5e-38 Identities = 99/437 (22%), Positives = 174/437 (39%), Gaps = 85/437 (19%) Query: 3 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANVYIAL 119 + E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 SFQW----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSGANEVSAKARLGIKD--------- 170 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 171 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 198 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 199 F--------------------DNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYY 238 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 239 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 295 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 296 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 355 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 356 EREFGLNLIATAPTVVY 372 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEP 473 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.007 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.0 bits (96), Expect = 7e-06 Identities = 58/315 (18%), Positives = 105/315 (33%), Gaps = 67/315 (21%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSGITSKTTIKEETQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 263 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 264 LKIFLTNSSSFSPK-------ESSFIMLLALSYFILLQPLCG---MLADKIKRTQMLMVF 313 IF+ + + ++ M+ L I+ + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 314 AIAGLIVTPVVFYGI 328 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 0.002 Identities = 47/242 (19%), Positives = 76/242 (31%), Gaps = 40/242 (16%) Query: 169 FNPKKEGFENAPSDIQKKETKNDKEKENLKKNPIDENHKTPNEESFLAIPTPY------N 222 +NP+ E N D T N+ + + P + +E+ + P P Sbjct: 981 YNPEVEK-RNQTVDTTNITTPNNIQADV-PSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 223 TTLNPLEPQEGLVQISSNPPTHYTI----YPKKNRFDDLSNPTNPTLKEIKQETKEREPT 278 T + + V+ + T T K+ + + +N + + ETKE + T Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 279 PKKETLTL---------------------------ATPKPIMPASAPNTENDNKTENHKA 311 KET T+ + + P + P END T N K Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND-PTVNIKE 1157 Query: 312 PNHPTKEESPQENAQKEMIEENIKENIKEEEKEAQNAPSFSPITPTSAKKPVMVKELSEN 371 P T + E KE + + N+ +P T A V S N Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 372 KE 373 K Sbjct: 1218 KP 1219
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.5 bits (69), Expect = 0.003 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 87 LQSYSVMLFFNLLLLIDILGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGVIALVALS 146 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 147 SSLL 150 S ++ Sbjct: 101 SHVV 104
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 49.6 bits (118), Expect = 3e-09 Identities = 24/57 (42%), Positives = 28/57 (49%) Query: 83 APKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 139 P P +P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 45.4 bits (107), Expect = 9e-08 Identities = 38/228 (16%), Positives = 69/228 (30%), Gaps = 53/228 (23%) Query: 84 PKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEE 143 P + P +P P P P P P E P KPKPKP+PK K V+KV+E Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVKKVQE 108 Query: 144 KKVVEEKKEEKKIVEQKVEQKKVEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQT 203 + + K E + ++ + + + Sbjct: 109 QPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ------ 162 Query: 204 RRDIDELYGEEFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLH 263 YP A L +G V+F + Sbjct: 163 ---------------------------------------YPARAQALRIEGQVKVKFDVT 183 Query: 264 PNGDISDLKIIIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 311 P+G + +++I+ M + ++ + +P + ++ I + Sbjct: 184 PDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 39.2 bits (91), Expect = 1e-05 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 87 TLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKV 146 T+ P P PP P E P+PEP P+P E K K K + KKV Sbjct: 48 TMVTPADLEPPQAVQPPPEPVVEPE-PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 106 Query: 147 VEEKKEEKKIVE 158 E+ K + K VE Sbjct: 107 QEQPKRDVKPVE 118 Score = 38.0 bits (88), Expect = 2e-05 Identities = 16/54 (29%), Positives = 23/54 (42%) Query: 74 QDPSKNTQGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKK 127 Q + +P P P P+ PKP KPKP+P K + +PK+ Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 33.8 bits (77), Expect = 6e-04 Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 74 QDPSKNTQGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPN 129 +P + P+P P++ P P P PKP K + +PK +P + Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Score = 30.3 bits (68), Expect = 0.009 Identities = 12/52 (23%), Positives = 16/52 (30%) Query: 75 DPSKNTQGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPK 126 +P P + P P P P K E+PK + KP Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 123
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 28.2 bits (62), Expect = 0.020 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 8/77 (10%) Query: 60 LFEKYPSVKDLAL-----ASLEEVKEIIKSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQ 114 + K P+ K+L L A +E+VKE + + +++ + AQKV+ G+ PS + Sbjct: 164 MLNKSPNNKELELTKEEFAKVEQVKETLMASERALDET---VQEAQKVLNMVNGLNPSNK 220 Query: 115 KELMSLEGVGQKTANVV 131 ++++ + V + +NVV Sbjct: 221 DQVLAKKDVAKAISNVV 237
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 28.6 bits (63), Expect = 0.042 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 143 NAAKNGEEHSTEGLGTVNKTGQDIESLYEKMQNATSLADSLNQRS--NEITQVISLIDDI 200 N + ++ + L T+NK +D+ S E ++ ++ N + +SL+ D+ Sbjct: 47 NKKLDQKDQVNQALDTINKVTEDVSSKLEGVRESSLELVESNDAGVVKKFVGSMSLMSDV 106 Query: 201 AEQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEKTQKA 242 A+ T + + A I A +G G V + +K ++TQKA Sbjct: 107 AKGTVVASQEATIVAKCSGMVAEGANKVVEMSKKAVQETQKA 148
>FLAGELLIN#Flagellin signature. Length = 507 Score = 243 bits (620), Expect = 2e-76 Identities = 125/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKISSSAGTGIGVLAEVINKNSNQTGVKAYANVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQNGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SLDGRGIEIKTDSVSDGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + +G V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 AGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.004 Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 20/106 (18%) Query: 50 KSLEN-LKNAFILENDDEANLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSENILKDF 108 L+ A +A+ E + VR + +KA Sbjct: 446 WLLKPRRAALIEALRSAPALAGCVAFDELREQPVAVRAFPW--RKAPGP----------- 492 Query: 109 QSFENFKQEATREWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 E+ +++ G G+ SA + D Sbjct: 493 --LEDADVLRLADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.0 bits (122), Expect = 1e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLESYEFN 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 31.3 bits (71), Expect = 0.003 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLESYEFNYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 894 bits (2313), Expect = 0.0 Identities = 287/1040 (27%), Positives = 517/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDMPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIQKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKISGVGGVQLNGF 176 +Q+ I+ + S ++ S + T ++DY + +K L +++GVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-NYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESYYTRLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F ++YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKIGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + ++ F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKERKLGQFELMSALKKELRS 631 + + E FT + G QN FV LKP +ER + ++ K EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENS-AEAVIHRAKMELGK 656 Query: 632 MPEAKGLESINLSEVSLIGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKQDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLIALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + S + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 278 bits (713), Expect = 8e-78 Identities = 104/394 (26%), Positives = 185/394 (46%), Gaps = 14/394 (3%) Query: 2796 NAVNWLNALFVAKGGNPLFAPYYLQDTPTKHIVTLMEDVSSALGMLTKPSLKNNSTDVLQ 2855 + L L + + +A + T I + ++ L + K + L Sbjct: 907 QGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLS 965 Query: 2856 LNTYTQQMGRLAKLSSFASFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKLKNN 2915 L+ RL LS + F++RL +LK+QRFA + +A +V+ +++ + + N Sbjct: 966 LSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEKPTN 1024 Query: 2916 LWATGVGGISFVENGSGTLYGINLGYDRFVRG---VIVGGYAAYGYSGFNSR--ITGSRS 2970 +WA +GG S G+ +LYG + G D ++ G IVGG+ +YGYS F+++ S + Sbjct: 1025 VWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGA 1084 Query: 2971 DNVNVGLYARAFIKKSELTFSVNETWGANKTQISSNDALLSMINQSYNYNTWTTNARVNY 3030 +N N G+Y+R F + E F G++++ ++ ALL +NQSYNY ++ R +Y Sbjct: 1085 NNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASY 1144 Query: 3031 GYDFMFKNKSVIIKPQISLGYYYIGMTGLDGVMNNALYNQFKANADPSKKSVLTINFAIE 3090 GYDF F ++++KP + + Y ++G T + S + + + +E Sbjct: 1145 GYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASANVE 1200 Query: 3091 NRHYFNKNSYFYAISGISRDLLVRSMGDKLVRFIGDNTLSYRKGELYNTFASITTGGEIR 3150 R+Y+ SYFY +G+ ++ + V + R NT A + GGE++ Sbjct: 1201 ARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGGELK 1257 Query: 3151 LFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3184 L K + N G L + + N+GMR +F Sbjct: 1258 LAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 32.3 bits (73), Expect = 0.044 Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 13/99 (13%) Query: 661 YKFQGPKNAYTFKNTNFLA-GNFKFQGATTIEKSVLNDASYTF---DGVNN-AFNE---- 711 Y N N L G+ A I + + + G+N A E Sbjct: 273 YSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYK 332 Query: 712 ----DKFNGGSFNFNHAEQTNAFNNNSFNGGSFSFNANQ 746 DK + + N ++ + NNS N+ Q Sbjct: 333 DKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQ 371
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.4 bits (68), Expect = 0.001 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLIELAELEAEIKVSSERKSSFNISLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.5 bits (131), Expect = 2e-10 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADSRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK LPV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.8 bits (64), Expect = 0.011 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 36.1 bits (83), Expect = 1e-04 Identities = 30/183 (16%), Positives = 78/183 (42%), Gaps = 10/183 (5%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQAAVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 219 + A A+ ++ + +K R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 220 N-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWVSPLTPEDVLNNPKFSTIKAIKNKQVY 277 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 278 KLP 280 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.029 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217