PredictBias

identification of genomic and pathogenicity islands in prokaryotic genome
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A) Input parameters
GenomePeCan4.gbkThreshold dinucleotide bias2
Threshold codon bias4Threshold %GC bias3
E-value (RPSBlast)0.05Genome (non-pathogenic)
 
B) Compare a potential GI or PAI in related non-pathogenic sp. (phylogenetic tree)
Potential GI or PAI start    end  
Select Organism     
 
C) Potential GIs and PAIs in CP002074 (download)
S.NoStartEndBiasVirulenceInsertion elementsPrediction
1HPPC_00250HPPC_00400Y        Y        YPathogenicity Island (biased-composition)
2HPPC_01505HPPC_01710Y        Y        YPathogenicity Island (biased-composition)
3HPPC_02275HPPC_02395Y        Y        NPathogenicity Island (biased-composition)
4HPPC_02505HPPC_02705Y        Y        YPathogenicity Island (biased-composition)
5HPPC_02870HPPC_02970Y        Y        NPathogenicity Island (biased-composition)
6HPPC_03275HPPC_03305Y        NNGenomic Island
7HPPC_03365HPPC_03455Y        Y        YPathogenicity Island (biased-composition)
8HPPC_03585HPPC_03695Y        Y        NPathogenicity Island (biased-composition)
9HPPC_04390HPPC_04420Y        Y        NPathogenicity Island (biased-composition)
10HPPC_05530HPPC_05560Y        Y        NPathogenicity Island (biased-composition)
11HPPC_06015HPPC_06170Y        Y        NPathogenicity Island (biased-composition)
12HPPC_06710HPPC_06740Y        Y        NPathogenicity Island (biased-composition)
13HPPC_06980HPPC_07090Y        Y        NPathogenicity Island (biased-composition)
14HPPC_07190HPPC_07250Y        Y        NPathogenicity Island (biased-composition)
15HPPC_07345HPPC_07825Y        Y        YPathogenicity Island (biased-composition)
16HPPC_00185HPPC_00210N        Y        NPathogenicity Island (unbiased-composition)
17HPPC_01230HPPC_01265N        Y        NPathogenicity Island (unbiased-composition)
18HPPC_01625HPPC_01660N        Y        NPathogenicity Island (unbiased-composition)
19HPPC_01760HPPC_01810N        Y        NPathogenicity Island (unbiased-composition)
20HPPC_02870HPPC_02900N        Y        NPathogenicity Island (unbiased-composition)
21HPPC_03035HPPC_03105N        Y        NPathogenicity Island (unbiased-composition)
22HPPC_04550HPPC_04580N        Y        NPathogenicity Island (unbiased-composition)
23HPPC_06540HPPC_06575N        Y        NPathogenicity Island (unbiased-composition)
24HPPC_07955HPPC_07995N        Y        NPathogenicity Island (unbiased-composition)

 
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