PredictBias

		>SECGEXPORT#Protein-export SecG membrane protein signature.

		          Length = 110

		

		 Score = 23.4 bits (50), Expect = 0.031

		 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

		

		Query: 1  MHTFSIILLTIVSITLIVVVLMQPSK-TNGLSGFMGGGSETFY 42

		          M+   +++  IV+I L+ ++++Q  K  +  + F  G S T +

		Sbjct: 1  MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLF 43

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score = 51.2 bits (122), Expect = 4e-12

		 Identities = 17/44 (38%), Positives = 27/44 (61%)

		

		Query: 1  MIINHNVNAMIAYRNIMINGALAGKAMERLASGMRINRASDDPA 44

		           +IN N  +++   N+  + +    A+ERL+SG+RIN A DD A

		Sbjct: 2  QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAA 45

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 32.2 bits (73), Expect = 2e-05

		 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

		

		Query: 3  KAMKLQTKITLLIITVVFLSIAIIISFVVSWMTGNIE----NKAKT 44

		          +A   Q   TLL I VV + I ++ S VV  + GN E     KA +

		Sbjct: 2  RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVS 47

		

		

		>ADHESNFAMILY#Adhesin family signature.

		          Length = 309

		

		 Score = 28.3 bits (63), Expect = 7e-04

		 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

		

		Query: 1  MKKLLSLFCAIFMTTVIFAGCSSSKNEKKEEATVRTITTVK 41

		          MKKL +L   +F++ +I   C+S K +      ++ + T  

		Sbjct: 1  MKKLGTLL-VLFLSAIILVACASGKKDTTSGQKLKVVATNS 40

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 36.0 bits (83), Expect = 1e-06

		 Identities = 8/42 (19%), Positives = 15/42 (35%)

		

		Query: 3  KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKH 44

		           IL+ +D+++IR  +   L    +DV                

		Sbjct: 5  TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG 46

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 42.1 bits (99), Expect = 6e-09

		 Identities = 12/43 (27%), Positives = 21/43 (48%)

		

		Query: 1  MSAEKILIVDDEKEIRDLIDIYLTNEGYITLKSSNGIEALELL 43

		          M+   IL+ DD+  IR +++  L+  GY    +SN       +

		Sbjct: 1  MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI 43

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 42.3 bits (99), Expect = 6e-09

		 Identities = 19/37 (51%), Positives = 26/37 (70%)

		

		Query: 8  QKKQHILEAAIIKFTENGFDKTSLREIASAAGLTTGA 44

		          + +QHIL+ A+  F++ G   TSL EIA AAG+T GA

		Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGA 47

		

		

		>PRTACTNFAMLY#Pertactin virulence factor family signature.

		          Length = 910

		

		 Score = 28.1 bits (62), Expect = 7e-04

		 Identities = 10/23 (43%), Positives = 14/23 (60%)

		

		Query: 7   YRLSNNLRIYDNGENEIRFRSGL 29

		           YR +N LR+ D G + +  R GL

		Sbjct: 798 YRAANGLRVRDEGGSSVLGRLGL 820

		

		

		>TCRTETA#Tetracycline resistance protein signature.

		          Length = 399

		

		 Score = 27.9 bits (62), Expect = 0.001

		 Identities = 12/29 (41%), Positives = 17/29 (58%)

		

		Query: 16 RSKLVKFIYLTVGLVFLGIGLLGVVLPIL 44

		           ++ +  I  TV L  +GIGL+  VLP L

		Sbjct: 3  PNRPLIVILSTVALDAVGIGLIMPVLPGL 31

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 32.1 bits (73), Expect = 2e-05

		 Identities = 9/43 (20%), Positives = 17/43 (39%)

		

		Query: 2  TKILLVEDDMALAIGVEYTLKQENYEVKRAKNLKEARDILREE 44

		            IL+ +DD A+   +   L +  Y+V+   N       +   

		Sbjct: 4  ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG 46

		

		

		>CLENTEROTOXN#Clostridium enterotoxin signature.

		          Length = 319

		

		 Score = 58.1 bits (140), Expect = 1e-14

		 Identities = 13/34 (38%), Positives = 21/34 (61%)

		

		Query: 8  IYNDIQEKVINYSDTIDLADGNYVVRRGDGWILS 41

		          I  D++  +   +   +L+DG YV+ +GDGWIL 

		Sbjct: 20 ISEDLKTPINITNSNSNLSDGLYVIDKGDGWILG 53

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 30.6 bits (69), Expect = 1e-04

		 Identities = 7/26 (26%), Positives = 13/26 (50%)

		

		Query: 10 KILIIDDEEDIVRLIRTVLKKEGFQN 35

		           IL+ DD+  I  ++   L + G+  

		Sbjct: 5  TILVADDDAAIRTVLNQALSRAGYDV 30

		

		

		>PF08280#M protein trans-acting positive regulator

		          Length = 530

		

		 Score = 24.0 bits (52), Expect = 0.019

		 Identities = 8/18 (44%), Positives = 10/18 (55%)

		

		Query: 15  KKLLRGIDLNVEKNHFVG 32

		             LLR  +L + KN  VG

		Sbjct: 160 IPLLRNFELKLSKNKIVG 177

		

		

		>adhesinb#Adhesin B signature.

		          Length = 310

		

		 Score = 23.3 bits (50), Expect = 0.038

		 Identities = 8/33 (24%), Positives = 14/33 (42%)

		

		Query: 1  MKKFISIIVTFAMIFSLVACGNKKENKNEVDLK 33

		          MKK   +++       L AC ++K +      K

		Sbjct: 1  MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSK 33

		

		

		>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family

		          signature.

		          Length = 290

		

		 Score = 41.3 bits (97), Expect = 1e-08

		 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 24/66 (36%)

		

		Query: 3  IIVLILGIIIGSFLNVCIYRIPK------------------------GESIIFPPSYCEK 38

		           +V +  ++IGSFLNV I+R+P                           +++ P S C  

		Sbjct: 17 SLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPPYNLMVPRSCCPH 76

		

		Query: 39 CGVNIK 44

		          C   I 

		Sbjct: 77 CNHPIT 82

		

		

		>ADHESNFAMILY#Adhesin family signature.

		          Length = 309

		

		 Score = 32.5 bits (74), Expect = 2e-05

		 Identities = 10/44 (22%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

		

		Query: 1  MKKILSFILILSNIIFFTACSAQNKESFSSKDEKIKVAVSFNPL 44

		          MKK+ + +++  + I   AC++  K+  ++  +K+KV  + + +

		Sbjct: 1  MKKLGTLLVLFLSAIILVACASGKKD--TTSGQKLKVVATNSII 42

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 31.0 bits (70), Expect = 6e-05

		 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

		

		Query: 1  MNKTNIIVADDEKLIREGLKIILSTYN-DIEVVGLAGDGREALS 43

		          M    I+VADD+  IR  L   LS    D+ +   A      ++

		Sbjct: 1  MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA 44

		

		

		>UREASE#Urea amidohydrolase (urease) protein signature.

		          Length = 570

		

		 Score = 23.9 bits (52), Expect = 0.020

		 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)

		

		Query: 16  IGASFIISTDS-SMGGYGEVIV 36

		           IGA  IIS+DS +MG  GEV +

		Sbjct: 353 IGAFSIISSDSQAMGRVGEVAI 374

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 27.9 bits (62), Expect = 8e-04

		 Identities = 8/16 (50%), Positives = 12/16 (75%)

		

		Query: 1  MKKYIHKKGFTLIEIM 16

		          M+    ++GFTL+EIM

		Sbjct: 1  MRATDKQRGFTLLEIM 16

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 53.0 bits (127), Expect = 3e-13

		 Identities = 22/40 (55%), Positives = 29/40 (72%)

		

		Query: 5  LEKMKKKKGFTLIELMVVISIILVLASFLVPKLTAYKDKA 44

		          +    K++GFTL+E+MVVI II VLAS +VP L   K+KA

		Sbjct: 1  MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKA 40

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 28.6 bits (64), Expect = 5e-04

		 Identities = 11/41 (26%), Positives = 20/41 (48%)

		

		Query: 4  RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRR 44

		           ILV +DD  I T++++ L  +GY V + ++          

		Sbjct: 5  TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA 45

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 32.3 bits (73), Expect = 2e-05

		 Identities = 8/39 (20%), Positives = 24/39 (61%)

		

		Query: 6  TKKMIREVFIKMLNERPLNKITVKDIATACEINRNTFYY 44

		          T++ I +V +++ +++ ++  ++ +IA A  + R   Y+

		Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYW 50

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 31.3 bits (71), Expect = 5e-05

		 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

		

		Query: 1  MRVLLVTGGAGFIGSNFIRYFLETNKDFIVV 31

		          M+ L VTG AGFIG +  +  LE     + +

		Sbjct: 1  MKYL-VTGAAGFIGFHVSKRLLEAGHQVVGI 30

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 48.2 bits (115), Expect = 5e-11

		 Identities = 18/33 (54%), Positives = 23/33 (69%)

		

		Query: 1  MKVLVSGGAGFIGSNLVDKLINLGHNVCIIDNL 33

		          MK LV+G AGFIG ++  +L+  GH V  IDNL

		Sbjct: 1  MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNL 33

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		          signature.

		          Length = 639

		

		 Score = 51.8 bits (124), Expect = 3e-12

		 Identities = 21/40 (52%), Positives = 28/40 (70%)

		

		Query: 5  IGILAHVDAGKTTFAEQILYHTKSIKSRGRVDHKSSFLDN 44

		          IG+LAHVDAGKTT  E +LY++ +I   G VD  ++  DN

		Sbjct: 6  IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDN 45

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 34.0 bits (78), Expect = 5e-06

		 Identities = 12/28 (42%), Positives = 16/28 (57%)

		

		Query: 3  KILIIEDDEAIREELQNFLRKYGYEVNA 30

		           IL+ +DD AIR  L   L + GY+V  

		Sbjct: 5  TILVADDDAAIRTVLNQALSRAGYDVRI 32

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 29.8 bits (67), Expect = 2e-04

		 Identities = 11/26 (42%), Positives = 14/26 (53%)

		

		Query: 3  KILITGAGSGLGKASSIALARRGHKV 28

		          K L+TGA   +G   S  L   GH+V

		Sbjct: 2  KYLVTGAAGFIGFHVSKRLLEAGHQV 27

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 37.5 bits (87), Expect = 3e-07

		 Identities = 10/44 (22%), Positives = 19/44 (43%)

		

		Query: 1  MERLKILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAMEKFQ 44

		          M    IL+ +DD  I  ++ ++L + GYD+    +         

		Sbjct: 1  MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA 44

		

		

		>cdtoxina#Cytolethal distending toxin A signature.

		          Length = 258

		

		 Score = 28.9 bits (64), Expect = 4e-04

		 Identities = 11/38 (28%), Positives = 14/38 (36%)

		

		Query: 3  KILSILIVGILALGLVACGSKQTTKNEEKNKIYKSGEE 40

		          K   I I GIL   L+   S    K     K++    E

		Sbjct: 4  KRTPIFIAGILIPILLNGCSSGKNKAYLDPKVFPPQVE 41

		

		

		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein

		          family signature.

		          Length = 86

		

		 Score = 25.9 bits (57), Expect = 0.004

		 Identities = 9/39 (23%), Positives = 22/39 (56%)

		

		Query: 6  VMGIIKDAIQTGLLISAPILTISILVGLIISIFQATTQI 44

		          ++     A+   L++S     ++ ++GL++ +FQ  TQ+

		Sbjct: 4  LVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQL 42