PredictBias

identification of genomic and pathogenicity islands in prokaryotic genome
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A) Input parameters
Genome2117.gbkThreshold dinucleotide bias2
Threshold codon bias4Threshold %GC bias3
E-value (RPSBlast)0.05Genome (non-pathogenic)
 
B) Compare a potential GI or PAI in related non-pathogenic sp. (phylogenetic tree)
Potential GI or PAI start    end  
Select Organism     
 
C) Potential GIs and PAIs in NC_009900 (download)
S.NoStartEndBiasVirulenceInsertion elementsPrediction
1RMA_0113RMA_0138Y        Y        YPathogenicity Island (biased-composition)
2RMA_0237RMA_0274Y        Y        NPathogenicity Island (biased-composition)
3RMA_0343RMA_0366Y        Y        NPathogenicity Island (biased-composition)
4RMA_0473RMA_0506Y        Y        NPathogenicity Island (biased-composition)
5RMA_0707RMA_0770Y        Y        YPathogenicity Island (biased-composition)
6RMA_0849RMA_0862Y        Y        NPathogenicity Island (biased-composition)
7RMA_1111RMA_1118Y        Y        NPathogenicity Island (biased-composition)
8RMA_1229RMA_1252Y        Y        NPathogenicity Island (biased-composition)
9RMA_1268RMA_1308Y        Y        YPathogenicity Island (biased-composition)
10RMA_0005RMA_0020N        Y        YPathogenicity Island (unbiased-composition)
11RMA_0395RMA_0400N        Y        NPathogenicity Island (unbiased-composition)
12RMA_0731RMA_0740N        Y        YPathogenicity Island (unbiased-composition)

 
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