>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 33.6 bits (77), Expect = 0.001 Identities = 69/332 (20%), Positives = 120/332 (36%), Gaps = 49/332 (14%) Query: 68 FFGVIGDRFGRKVALTSALFCMSVPTVLIGILPTYHTIGITATILMICVRILQGLS-MGG 126 G + DRFGR+ L +L +V ++ P +L I RI+ G++ G Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL-------WVLYIG-RIVAGITGATG 113 Query: 127 ALTGSISFVI--EHTSHKHQGFTGSISMSSICSGLLLGSFVSYIVKNILTASQFDSFGWR 184 A+ G+ I +H GF + + +G +LG + F Sbjct: 114 AVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMG-------------GFSPH 160 Query: 185 IPFLLGFFILFAAFYIKKNTHETPNFKNLREQKKILQSPLKKVITNYW--FDILISIFIN 242 PF + F L E K + PL++ N F + + Sbjct: 161 APFFAAAALNGLNFLT--------GCFLLPESHKGERRPLRREALNPLASFRWARGMTVV 212 Query: 243 APGSIIFYLTTIYLVSFLKISRNFTENEVNSLASVSYVIMIAV-----TLLSGYLSDIIG 297 A +F++ + + F E+ + + + I +A +L ++ + Sbjct: 213 AALMAVFFIMQLVGQVPAALWVIFGEDRFH-WDATTIGISLAAFGILHSLAQAMITGPVA 271 Query: 298 RR--KIFVINLIIIIVTTSFLLNNFENGAFTSVIISQLILAILAASYIGPEPALQAEL-- 353 R + + L +I T ++L F T ++ I+ +LA+ IG PALQA L Sbjct: 272 ARLGERRALMLGMIADGTGYILLAF----ATRGWMAFPIMVLLASGGIG-MPALQAMLSR 326 Query: 354 YPTNIRNTALSISYNTATSIFGGTTPLVFEYL 385 R L S TS+ PL+F + Sbjct: 327 QVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 56.1 bits (135), Expect = 6e-14 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 1/100 (1%) Query: 1 MIDILLFVHITIAILLIIVILMQR-SGSDGISSISGGNNMGVVSAKTVGNFLTKSTIILT 59 M + LL V + +AI L+ +I++Q+ G+D +S G + + + GNF+T+ T +L Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 60 TLFLINAIVLANLSSKKKSDLVSKINEIEENQAENSLPIA 99 TLF I ++VL N++S K + N + E + P A Sbjct: 61 TLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAA 100
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 28.7 bits (64), Expect = 0.037 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 2/52 (3%) Query: 218 PNTKIYDQIYNIAIDEFLKQNSNKFDIIFSFCGLSFTNNLIEYFNLIYSSLN 269 P T+I+ Q+ + + + LK++S DII ++C L+F+ ++Y LIY + N Sbjct: 250 PQTRIFQQLKKLFVYDSLKKSSR--DIIETYCQLNFSAGDLDYLYLIYITAN 299
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 235 bits (600), Expect = 7e-80 Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 7/201 (3%) Query: 57 YDPYEKFNRKVFVFN-SVLDYIILRPLAIGYKNITNDYVKARVNSFVSNVDTLLTAVNYG 115 DP E FNR ++ FN +VLD I+RP+A+ +++ + +++F N++ VNY Sbjct: 29 SDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAVMVNYF 88 Query: 116 LQLNYDKTMKSVWRFLINTTLGIGGLFDVAGKVGLPSNR---QTFGSTLAHYGVAPGPYL 172 LQ + + M RF +NT LG+GG DVAG R FGSTL HYGV GPY+ Sbjct: 89 LQGDPYQGMVHFTRFFLNTILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPYV 148 Query: 173 VLPIIGSTNARDMTDLVITNYALNPLMYYTHNDFDLGVLAVSTINDRYVVLPFSDYVMKN 232 LP GS RD D AL P++ + +G + I R +L SD +++ Sbjct: 149 QLPFYGSFTLRD--DGGDMADALYPVLSWLTWPMSVGKWTLEGIETRAQLLD-SDGLLRQ 205 Query: 233 STDPYVAIRSALHRAREASVQ 253 S+DPY+ +R A + + Sbjct: 206 SSDPYIMVREAYFQRHDFIAN 226
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 255 bits (652), Expect = 1e-84 Identities = 101/361 (27%), Positives = 166/361 (45%), Gaps = 21/361 (5%) Query: 27 TVEINLSTIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEE 86 ++L +K N +++ + V + VKAN YG G +I A+ + F + + EE Sbjct: 6 QASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDG--FALLNLEE 63 Query: 87 GVNLRNALGLDVNILVLNGVFEHDALELI-EYNLTPVLNNLKQIEIWQKFSNLKNRLLPC 145 + LR G IL+L G F LE+ ++ LT +++ Q++ Q + LK L Sbjct: 64 AITLRER-GWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQN-ARLKAPL-DI 120 Query: 146 YLHFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKA 205 YL N+G+NRLG D + + + + ++SH A +E D + R + Sbjct: 121 YLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISG--AMARIEQ 178 Query: 206 YLQYFPNVKASLANSGGIFLGQDYHFDLARSGAALYGLNPLTKN---------PV-TLKA 255 + + SL+NS + HFD R G LYG +P + PV TL + Sbjct: 179 AAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSS 237 Query: 256 PIIHLQNLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQGEVFINSRGVPIVG 315 II +Q L +GY +T + + I + GYADG+ R+ V ++ VG Sbjct: 238 EIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVG 297 Query: 316 RVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGSRYKRKY 375 VSMD++ +D+T P + +G E+ G D +A+ GT+GYE++ L R Sbjct: 298 TVSMDMLAVDLTPCP--QAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVPVVT 355 Query: 376 I 376 + Sbjct: 356 V 356
>PF06438#Heme acquisition protein HasAp Length = 205 Score = 31.1 bits (70), Expect = 0.006 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 8/74 (10%) Query: 71 DAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGGSRRSSRPTSAKVRGSDLKYNLTIN 130 D G N GGF+P G ++ +S+ +A + G DL Y L N Sbjct: 29 DVNHRPGQVVDGSNTGGFNP--GPFDGSQYA------LKSTASDAAFIAGGDLHYTLFSN 80 Query: 131 LEEAFHGIEKNISF 144 G +I+ Sbjct: 81 PSHTLWGKLDSIAL 94
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 150 bits (381), Expect = 2e-42 Identities = 86/389 (22%), Positives = 148/389 (38%), Gaps = 72/389 (18%) Query: 34 KKTRNLMGKVIGIDLGTTNSCVAVMEG----KEPKVIE-NAEGERTTPSIIAFANGEKLV 88 KK R + + IDLGT N+ + V EP V+ + + S+ A V Sbjct: 3 KKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAA-------V 55 Query: 89 GQSAKRQAVTNPRNTIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWVEADNNKY 148 G AK+ P N I A++ PM KD I + + Sbjct: 56 GHDAKQMLGRTPGN-IAAIR---------PM--KDGVIADF------------------F 85 Query: 149 SPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIIN 208 ++ ++++ + + ++ VP +R+A +++ + AG + +I Sbjct: 86 VTEKMLQHFIKQVHSNS---FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIE 142 Query: 209 EPTAAALAYGFEKSASKTIAVYDLGGGTFDVSILEIADGVFEVKSTNGDTFLGGEDFDTR 268 EP AAA+ G S + V D+GGGT +V+++ + V + +GG+ FD Sbjct: 143 EPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEA 197 Query: 269 ILNHLIDVFKKENGIDLSKDPLALQRLKEAAEKAKKELSSAVTTD----INLPYITADSS 324 I+N++ + G + AE+ K E+ SA D I + Sbjct: 198 IINYVRRNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEG 244 Query: 325 GPKHLNIKFTRAELEKLVDDLIEKTIEPCRKALQD-AGFKASDIQE--VVLVGGMTRMPK 381 P+ + + LE L + L + AL+ ASDI E +VL GG + Sbjct: 245 VPRGFTLN-SNEILEALQEPLTG-IVSAVMVALEQCPPELASDISERGMVLTGGGALLRN 302 Query: 382 VQEAVKKIFGREPHKGVNPDEVVALGAAI 410 + + + G +P VA G Sbjct: 303 LDRLLMEETGIPVVVAEDPLTCVARGGGK 331
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 52.7 bits (126), Expect = 1e-09 Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 32/196 (16%) Query: 56 AVSAYDDTSSWTGTGFINDKNNGYIITNTHVVGGASIGTYFVTFY----------NGEQA 105 + T ++ +G + K+ ++TN HVV + + + NG Sbjct: 92 YIQVEAPTGTFIASGVVVGKDT--LLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFT 149 Query: 106 EAKLIYYDIWQDYAVLKVE----SKDIPASATQISFA-SELPKLNQKVFVVGNTEAQGFS 160 ++ Y D A++K +K I + + + ++NQ + V G + Sbjct: 150 AEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDK--- 206 Query: 161 FHTGYLSDLYNIAGLMPQC-TYVINL--NTTGGASGSPVLNDKIEAIGVLYGGGKTHSLA 217 ++ ++ G + + +TTGG SGSPV N+K E IG+ +GG + Sbjct: 207 ----PVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVP-NEF- 260 Query: 218 LHGDYVVRTLESLKNN 233 + V E+++N Sbjct: 261 ---NGAVFINENVRNF 273
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 85.6 bits (212), Expect = 3e-20 Identities = 63/359 (17%), Positives = 122/359 (33%), Gaps = 58/359 (16%) Query: 23 VGIDFGTTNSLIAIAANRKVKVIKSIDDKELIPTTIDFTSNNFTIGKNKGLRSIKRLFGK 82 + ID GT N+LI + V S+ + +G + K++ G+ Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIR--QDRAGSPKSVAAVGHDA-----KQMLGR 65 Query: 83 TLKEILNT-PALFSLVKDYLDVNSSELKLNFANKQLRVPEIAAEVFIYLKNQAEEQ-LKT 140 T I P ++ D+ + ++ + Q Sbjct: 66 TPGNIAAIRPMKDGVIADF--------------------FVTEKMLQHFIKQVHSNSFMR 105 Query: 141 NLTKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYD 200 + ++ VP R + +A+ AG + LI EP AAA GL ++ +V D Sbjct: 106 PSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVD 165 Query: 201 LGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQLAKK 260 +GGGT +V++++ + + +GG+ D I Y+ + S+ A++ Sbjct: 166 IGGGTTEVAVIS-----LNGVVYSSSVRIGGDRFDEAIINYVRRNY---GSLIGEATAER 217 Query: 261 AKETL-TYKDSFNNDNISINKQTLEQLILPLVERTINIAQECLEQAGNPNID-------- 311 K + + I + + L + + N E L++ + Sbjct: 218 IKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQ 277 Query: 312 ------------GVILVGGATRIPLIKDELYKAFKIDILSDIDPDKAVVWGAALQAENL 358 G++L GG + + L + I ++ DP V G E + Sbjct: 278 CPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMI 336
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 48.6 bits (116), Expect = 2e-08 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 35/190 (18%) Query: 188 ASAISCLTNDEKNLGSLIIDMGDKTTSFGIFFAGKLIYTGHVNIGSFHISSDI----AKV 243 A+AI + GS+++D+G TT + ++Y+ V IG I + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 244 FG--IDLVTAEKLKILYGNAMIPLFEKDSIINMEDFQVDTHHTLNTSVTIYKLAEVIRAR 301 +G I TAE++K G+A + D + +E + + T+ E++ A Sbjct: 206 YGSLIGEATAERIKHEIGSA----YPGDEVREIEVRGRNLAEGVPRGFTL-NSNEILEAL 260 Query: 302 AEEILSMVKA------------EYDKATKGQVEVFRVVITGGGSQLRGLKELSNKIFEKQ 349 E + +V A D + +G +V+TGGG+ LR L L + Sbjct: 261 QEPLTGIVSAVMVALEQCPPELASDISERG------MVLTGGGALLRNLDRLLMEE---- 310 Query: 350 SRIGKPEIIA 359 G P ++A Sbjct: 311 --TGIPVVVA 318
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 27.3 bits (60), Expect = 0.032 Identities = 9/14 (64%), Positives = 12/14 (85%) Query: 155 ISKPQDIADVILFL 168 ++KP DIAD +LFL Sbjct: 225 LAKPSDIADAVLFL 238
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 191 bits (487), Expect = 4e-55 Identities = 105/457 (22%), Positives = 188/457 (41%), Gaps = 68/457 (14%) Query: 4 IRNIAIIAHVDHGKTTLVDNMLKQSGTFRANQAVAE--RAMDSNDLERERGITILAKCTA 61 I NI ++AHVD GKTTL +++L SG +V + D+ LER+RGITI T+ Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 62 LMWNDIRINIVDTPGHADFGGEVERILSMVDGVVLLVDASEGPMPQTKFVLSKALNLGLK 121 W + ++NI+DTPGH DF EV R LS++DG +LL+ A +G QT+ + +G+ Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 122 PIVVINKIDRDDQRIKEVINEVFELFVA----------------------------LEAN 153 I INKID++ + V ++ E A +E N Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 154 NDQL-----DFPIVYASGRAGRASLTFDDKINP------LDNLADDLAPLFDLIVQHVPK 202 +D L + + + + P +N+ + L ++I Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIG--IDNLIEVITNKFYS 240 Query: 203 PLADDKAPFSMLVTTREYNSFFGRVLTGRVQSGTVKINQNVKVLNRENKVLETGRITKIL 262 ++ V EY+ R+ R+ SG + + +V++ +E +IT++ Sbjct: 241 STHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-----KITEMY 295 Query: 263 AFRGLERIAINDATAGDIIAVAGVE---NANVADTICSPEVTEAVPSLPIDPPTLSMTFS 319 E I+ A +G+I+ + N+ + DT P P P L T Sbjct: 296 TSINGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLP--QRERIENP--LPLLQTTVE 351 Query: 320 VNDSPLAGSEGTKVTSSLIGARLMREL-ESNVALKVTEAAEKNAFQVAGRGELQLGILIE 378 + + + +L E+ +S+ L+ + + ++ G++Q+ + Sbjct: 352 PSKP----QQREMLLDAL------LEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCA 401 Query: 379 TMRRE-GFELSISRPEVLFQTDEKGNKQEPMEEIQVD 414 ++ + E+ I P V++ K E I+V Sbjct: 402 LLQEKYHVEIEIKEPTVIYMERPLK-KAEYTIHIEVP 437 Score = 29.4 bits (66), Expect = 0.049 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 1/80 (1%) Query: 406 EPMEEIQVDVDDDYVGVVVKSLALRKAEMTDMRPSGGGKSRVTFIGPSRGLIGYHSQFLT 465 EP ++ +Y+ A + D + + ++ P+R + Y S Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 466 ETRGTGIMNRIFHGYADYKG 485 T G + GY G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>PF07675#Cleaved Adhesin Length = 1358 Score = 29.3 bits (65), Expect = 0.010 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 54 DLSNIAVGQTVTVKWQGKPIFITNRTPDKIAEARAVKMSE 93 +L+ AVGQ VT+KW P N P+ +SE Sbjct: 597 NLTGSAVGQKVTLKWSA-PNGTPNPNPNPNPNPGTTTLSE 635
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 53.6 bits (129), Expect = 3e-10 Identities = 41/247 (16%), Positives = 87/247 (35%), Gaps = 38/247 (15%) Query: 7 TLMITGGTGSFGNAVLSRFLKS-------DIINDIKEIRIFSRDEKKQEDMRIAFNNPKL 59 ++TG G G V R L++ D +ND ++ + ++ P Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSL-------KQARLELLAQPGF 54 Query: 60 KCYIGDVRNYKSIDE--AMHGVDYVFHAAALKQVPTCEFYPMEAINTNVLGAENVLSAAI 117 + + D+ + + + + A + VF + V P ++N+ G N+L Sbjct: 55 QFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR 114 Query: 118 NNKVTKVIVLST---------------DKAVYPINAMGLSKALMEKLAIAKARMRSPGET 162 +NK+ ++ S+ D +P++ +K E +A + + T Sbjct: 115 HNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPAT 174 Query: 163 VLCVTRYGNVMASRGS---VIPLFINQIKQGKELTI-TEPSMTRFLMSLVDSVDLVLYAF 218 L R+ V G + F + +GK + + M R + D + ++ Sbjct: 175 GL---RFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQ 231 Query: 219 EHGHQGD 225 + D Sbjct: 232 DVIPHAD 238
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.5 bits (74), Expect = 0.002 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Query: 54 DNSRDYYANATGVVEQVSAHQGEIVKKGDILLVID--KNIAETTKSRAAALLNTKQEDYN 111 S++ +V+++ +GE V+KGD+LL + A+T K++++ L ++ Sbjct: 94 GRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQ--T 151 Query: 112 RKEAL 116 R + L Sbjct: 152 RYQIL 156
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 56.2 bits (136), Expect = 2e-14 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 2 MITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKEQKRIEIRNFGNFSIRKRK 59 M K LI K+ + L+K+D +VD + ++ L + +++++ FGNF +R+R Sbjct: 1 MANKQDLIAKVAEATE-LTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERA 57
>FLAGELLIN#Flagellin signature. Length = 507 Score = 30.8 bits (69), Expect = 0.025 Identities = 35/261 (13%), Positives = 74/261 (28%), Gaps = 18/261 (6%) Query: 466 VASSIGTNIADNNLSIDNYSIGNRTIAQQNLTPTLQLAGGIIDDGGMRVTSTDNGRQVLT 525 + T+ A+NN ++D + T G I G T G Sbjct: 232 ANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAI----AGAIKGGKEGDTFDYKGVTFTI 287 Query: 526 QAVDSLVNNYRSSKLLQDSYQSQFMSSQSYLDSLNDRYSDLTTTGNSIATEIGKRLSYEE 585 N K+ + + + + + T + + Sbjct: 288 DTKTGNDGN---GKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTF 344 Query: 586 AKSIGITDSQYLALQQMNSDSTSATDHTGSSNRKGTSTSATGSIGVNTMFGSGMTTVGSS 645 ++ L+ N+ + + + ++ TMF + S+ Sbjct: 345 DDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVST 404 Query: 646 NTLDQDQGKSVNQQQSY---NEALSKIKSATKD-----GRLSNANSNVQSLSNNLNSNFS 697 + + + ALSK+ + R +A +N+ + NLNS S Sbjct: 405 LINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARS 464 Query: 698 EQQSV--GQEIAQ-TKQNMQQ 715 + E++ +K + Q Sbjct: 465 RIEDADYATEVSNMSKAQILQ 485
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 48.4 bits (115), Expect = 6e-09 Identities = 16/97 (16%), Positives = 38/97 (39%) Query: 127 DFAEAYNNKGVSYKKLGKYQEAIRLYNIAIKYKPSFAEAYNNKGDTLNSLGKYQEAIENF 186 D E + + + GKY++A +++ + + G ++G+Y AI ++ Sbjct: 34 DTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 93 Query: 187 DLALKYAPRYPEAYYNKGISLINLGQHQEAIKNYDIS 223 + P ++ L+ G+ EA ++ Sbjct: 94 SYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLA 130 Score = 43.8 bits (103), Expect = 2e-07 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 3/131 (2%) Query: 224 LKYKPDYANAYYNKATSLMQLGKYQEAIKNFDSVIKYQCDNEDAYNLKGCIFSILGKQQE 283 + D Y+ A + Q GKY++A K F ++ + + G +G+ Sbjct: 29 NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88 Query: 284 AIKNYDLAIKYKPNFAAAYCNKGTSFRKLGKYQDAIKSYDLA---IKYKSDYAESYLEKG 340 AI +Y + + G+ +A LA I K+++ E Sbjct: 89 AIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVS 148 Query: 341 IVLVNLGKYKE 351 +L + KE Sbjct: 149 SMLEAIKLKKE 159 Score = 42.2 bits (99), Expect = 7e-07 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 3/106 (2%) Query: 62 EEYFNIGRSLYKLGKYKKAIKNYDLAIKYKTDCAKCYNNKGRALNELANHQEAITNYDLA 121 E+ +++ + Y+ GKY+ A K + ++ + G + + AI +Y Sbjct: 37 EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 96 Query: 122 IKYDIDFAEAYNNKGVSYKKLGKYQEAIRLYNIA---IKYKPSFAE 164 DI + + G+ EA +A I K F E Sbjct: 97 AIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKE 142 Score = 41.1 bits (96), Expect = 2e-06 Identities = 18/95 (18%), Positives = 30/95 (31%) Query: 164 EAYNNKGDTLNSLGKYQEAIENFDLALKYAPRYPEAYYNKGISLINLGQHQEAIKNYDIS 223 E + GKY++A + F + G +GQ+ AI +Y Sbjct: 37 EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 96 Query: 224 LKYKPDYANAYYNKATSLMQLGKYQEAIKNFDSVI 258 ++ A L+Q G+ EA Sbjct: 97 AIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQ 131 Score = 35.3 bits (81), Expect = 2e-04 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 10/131 (7%) Query: 178 KYQEAIENF-----DLA--LKYAPRYPEAYYNKGISLINLGQHQEAIKNYDISLKYKPDY 230 +YQ A+E+F +A + + E Y+ + G++++A K + Sbjct: 10 EYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYD 69 Query: 231 ANAYYNKATSLMQLGKYQEAIKNFDSVIKYQCDNEDAYNLKGCIFSILGKQQEAIKNYDL 290 + + +G+Y AI ++ G+ EA L Sbjct: 70 SRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFL 129 Query: 291 A---IKYKPNF 298 A I K F Sbjct: 130 AQELIADKTEF 140 Score = 34.5 bits (79), Expect = 3e-04 Identities = 15/87 (17%), Positives = 28/87 (32%) Query: 112 QEAITNYDLAIKYDIDFAEAYNNKGVSYKKLGKYQEAIRLYNIAIKYKPSFAEAYNNKGD 171 ++A + D + + G + +G+Y AI Y+ + + Sbjct: 53 EDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAE 112 Query: 172 TLNSLGKYQEAIENFDLALKYAPRYPE 198 L G+ EA LA + E Sbjct: 113 CLLQKGELAEAESGLFLAQELIADKTE 139 Score = 33.7 bits (77), Expect = 6e-04 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 1/97 (1%) Query: 263 DNEDAYNLKGCIFSILGKQQEAIKNYDLAIKYKPNFAAAYCNKGTSFRKLGKYQDAIKSY 322 E Y+L GK ++A K + + + G + +G+Y AI SY Sbjct: 35 TLEQLYSL-AFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 93 Query: 323 DLAIKYKSDYAESYLEKGIVLVNLGKYKEAKENFNLA 359 L+ G+ EA+ LA Sbjct: 94 SYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLA 130 Score = 28.7 bits (64), Expect = 0.024 Identities = 15/86 (17%), Positives = 28/86 (32%) Query: 304 NKGTSFRKLGKYQDAIKSYDLAIKYKSDYAESYLEKGIVLVNLGKYKEAKENFNLAFKYK 363 + + + GKY+DA K + + +L G +G+Y A +++ Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100 Query: 364 SNLIEEYEAIIKALRQLGNDLMANEF 389 + L Q G A Sbjct: 101 IKEPRFPFHAAECLLQKGELAEAESG 126
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 34.8 bits (79), Expect = 3e-04 Identities = 16/38 (42%), Positives = 25/38 (65%) Query: 277 EGLQVGKAQGIQIGEAKGIQIGEAKGIQIGKAEGKAEE 314 +G Q G A+G Q G +G Q G A+G++ G AE K+++ Sbjct: 54 QGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQ 91 Score = 32.8 bits (74), Expect = 0.001 Identities = 15/36 (41%), Positives = 22/36 (61%) Query: 267 QQEGKELGILEGLQVGKAQGIQIGEAKGIQIGEAKG 302 ++G + GI EG Q G QG Q G A+G++ G A+ Sbjct: 52 HEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEA 87
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.3 bits (63), Expect = 0.035 Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 103 NLLIFGPSGVGKSHLAAAIGYA 124 L+I G SG GK +A A+ Sbjct: 162 TLMITGESGTGKELVARALHDY 183
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 27.9 bits (62), Expect = 0.007 Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 18 AEFKESAIKLAIE-SKQPVAQTARELGITKSSLYNWVNKY 56 AE + I A+ ++ + A LG+ +++L + + Sbjct: 434 AEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.7 bits (82), Expect = 2e-05 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Query: 42 FINREGYGVALASLDNTIVGFIAWSKSLLFVSDKTRIHIEVLVIDENYRGKQIGKKLMEY 101 ++ EG L L+N +G I + IE + + ++YR K +G L+ Sbjct: 59 YVEEEGKAAFLYYLENNCIGRIKIRSNW-----NGYALIEDIAVAKDYRKKGVGTALLHK 113 Query: 102 LEEIAK 107 E AK Sbjct: 114 AIEWAK 119
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 64.5 bits (157), Expect = 9e-13 Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 19/134 (14%) Query: 336 VMGHVDHGKTSLLDALKSTDIAAGELG------------------GITQHIGAYRVTLAD 377 V+ HVD GKT+L ++L A ELG GIT G + Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 378 GRAITFIDTPGHEAFSEMRSRGAKVTDIVIIVVAADDGIKTQTVEAINHAKAAGVPIIVA 437 + + IDTPGH F R V D I++++A DG++ QT + + G+P I Sbjct: 68 TK-VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFF 126 Query: 438 INKIDKPDIDIERV 451 INKID+ ID+ V Sbjct: 127 INKIDQNGIDLSTV 140
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 31.5 bits (71), Expect = 0.034 Identities = 64/289 (22%), Positives = 95/289 (32%), Gaps = 59/289 (20%) Query: 419 TGNFTGDASNPGNTAGVITFAANGTLASA-----SADANVAVTNNITAIEASGV---GVV 470 T TG+ + T G A G +AS + D + NI A G Sbjct: 278 TSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPND 337 Query: 471 QLSGTHTAELRLGNAGSVFQLADGTVINGKVNQ-------TAVVGGALAAGAITLDGSAT 523 + S T + S ++ VIN + T V+ G A G T+ Sbjct: 338 KPSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINR 397 Query: 524 IT----GDIGNGGGAAAL-----------QGITLANDA----------TKTLTLGGANII 558 I G I GG A+L GI L+N A T +T+ G + Sbjct: 398 INTNADGTIRVGGFKASLTTNAAHLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRV 457 Query: 559 GSNVGG-TIDFQANGGTIKLTSTQNNILVDFDLDITTDQTGVVDASSLTNA--------- 608 + VGG + + K + N F+ DI+ + + + T Sbjct: 458 NNQVGGYALAGSSANFEFKAGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNG 517 Query: 609 --QTLTISGTIGTIGANNKTLGQFNIGSSKTALNGGNVAINELVIGNNG 655 TL SG + N ++ T + N INELV+ NG Sbjct: 518 GFNTLDFSGVTNKVNINKLI-------TASTNVAVKNFNINELVVKTNG 559 Score = 31.5 bits (71), Expect = 0.041 Identities = 40/165 (24%), Positives = 61/165 (36%), Gaps = 18/165 (10%) Query: 143 NAQAAATKNAQNVVAPFNGGAA----IANNDLSGVGTIDWGAADSTLVFNLANPTTQKAP 198 +AQ + Q + PF GG I + + GTI G ++L N A+ K Sbjct: 369 SAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTNAAHLHIGKGG 428 Query: 199 LVLGNNA----VIANGVNGTL---------NVTNGFIQVSDKSFATVKAINIGDGQGFIF 245 + L N A ++ + G + N G+ + KA F Sbjct: 429 INLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGTDTKNGTATF 488 Query: 246 NTDATVGNALNLQAGGATINFNGTD-GTGRLVLLSKNGAATDFNV 289 N D ++G +NL+ T NF G D G G L +G N+ Sbjct: 489 NNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNI 533
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 34.1 bits (78), Expect = 0.002 Identities = 32/183 (17%), Positives = 78/183 (42%), Gaps = 8/183 (4%) Query: 381 LLLIILFIFLYKAADSIPMAMSSP-LFLDLSFTTHEIAVIYKAYGLLIMIVGGALGGVLA 439 +L+ + + + + + + +S P + D + + A+ +L +G A+ G L+ Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAF-MLTFSIGTAVYGKLS 73 Query: 440 AKMGIFHSVLIGGVIQLLSPLMFMILATIGYDIKPF-ILTVTVQNFCAGFAGTIISIYFA 498 ++GI +L G +I ++ +G+ I+ +Q A ++ + A Sbjct: 74 DQLGIKRLLLFGIIINCFGS----VIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVA 129 Query: 499 SLCNSEFVATQYSIIASFSSLSRIILASLGGICAKYLTWPVFFLGNTLFSMLFIPIFYKI 558 E + +I S ++ + ++GG+ A Y+ W L + +++ +P K+ Sbjct: 130 RYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMI-TIITVPFLMKL 188 Query: 559 YRK 561 +K Sbjct: 189 LKK 191
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 30.3 bits (68), Expect = 0.046 Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 132 KVNIKNFNSLINSLSNKLITDFENNYLDSAFQKLDNITNNILNDLNEFGAE 182 ++I++ + NS +++ + + Y F +NI+ D++ Sbjct: 810 FLDIQSIKNFFNSQVEQVMKEILSPYQLLLFASKGP-NSNIIEDISGKNTL 859
>FLAGELLIN#Flagellin signature. Length = 507 Score = 37.3 bits (86), Expect = 7e-04 Identities = 31/290 (10%), Positives = 62/290 (21%), Gaps = 1/290 (0%) Query: 353 LNGALSQVTGNIGNTNSLATISIGAGTATLGGAVIKATTIDLTDAASVLTLTNANA-VLT 411 L+ N TI + G L + N Sbjct: 137 LSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYD 196 Query: 412 GAIDNTTGVDNVGVLNLNGALSQVTGNIGNTNSLATISVGAGTATLGGAVIKATTTDLTD 471 + A + T + Sbjct: 197 TYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKST 256 Query: 472 AASVLTLTNANAVLTGAIDNTTGVDNVGVLNLNGALSQVTGNIGNTNSLATISIGAGTAT 531 A + A A+ G +T V + G + T + +++ T Sbjct: 257 AGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADIT 316 Query: 532 LGGAVIKATTTDLTDAASVLTLTNANAVLTGAIDNTKGVDNVGVLNLNGALSQVTGNIGN 591 G A + A T + + + + + ++ N S++T N Sbjct: 317 AGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAE 376 Query: 592 TNSLATISVGAGTATLGGAVIKATTIDLTDAASVLTLTNANAVLTGAIDN 641 + A A+ + + A +ID+ Sbjct: 377 YTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDS 426 Score = 35.4 bits (81), Expect = 0.002 Identities = 44/295 (14%), Positives = 67/295 (22%), Gaps = 5/295 (1%) Query: 503 LNGALSQVTGNIGNTNSLATISIGAGTATLGGAVIKATTTDLTDAASVLTLTNANAVLTG 562 L+ N TI + G L + N Sbjct: 137 LSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYD 196 Query: 563 AIDNTKGVDNVGVLNLNGALSQVTGNIGNTNSLATISVGAGTATLGGAVIKATTIDLTDA 622 V V + + VT T A T +DL Sbjct: 197 TYAVGANKYRVDV----NSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKT 252 Query: 623 ASVLTLTNANAVLTGAIDNTTGVDNVGVLNLNGALSQVTGNIGNTNSLATISVGAGTATL 682 T + GAI D + + TGN GN TI+ G Sbjct: 253 TKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTIN-GEKVTLT 311 Query: 683 GGAVIKATTIDLTDAASVLTLTNANAVLTGAIDNTKGVDNVGVLNLNGALSQVTGNIGNT 742 + + V + K + L+ A + V G T Sbjct: 312 VADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKIT 371 Query: 743 NSLATISIGAGTATLGGAVIKATTIDLTDAASVLTLTNANAVLTGAIDNTTGVDN 797 + A + A + A S L +A A + +D+ Sbjct: 372 VNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDS 426
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 30.7 bits (69), Expect = 0.005 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 13/71 (18%) Query: 131 YVDFVDLSMFKVFTGAGVG-AAFIKEKINSKDIKDGVTKTFNGTTKNKTNFAYQLSLGTS 189 Y D V F ++ G G G ++ KI++KD+ K T +LG + Sbjct: 445 YADLVTTESFSIYGGVGAGLGSYTYAKIDNKDV------------KGYTGMVASGALGVA 492 Query: 190 FEVAQGVKAEL 200 A+GV +L Sbjct: 493 INAAEGVCVDL 503
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 40.7 bits (95), Expect = 2e-06 Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 21/187 (11%) Query: 6 KLLLIAATSATILSSSLSFAEGMDNEWYLRIDTGAAMFNEEKDKATGVKLKSNTTVPVDL 65 K IA A ++++ A DN WY G + +++ N Sbjct: 2 KKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAF 61 Query: 66 GIGYYISENCRADLTLGTIIGGKLKKSGAATNAPFTGTNVSASHKPTITRLLINGYVDLT 125 G GY ++ + +G G++ G+ N + V + K Sbjct: 62 G-GYQVNPYVGFE--MGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPIT--------- 109 Query: 126 NFDMFDVFAGAGVGPALVKEKITYNGITGLSSNTKNRTNISYKLTLGTSAQIADGVKVEL 185 D D++ G V T + + G + +T +S G I + L Sbjct: 110 --DDLDIYTRLGGM---VWRADTKSNVYGKNHDTG----VSPVFAGGVEYAITPEIATRL 160 Query: 186 AYSWIDD 192 Y W ++ Sbjct: 161 EYQWTNN 167
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 32.8 bits (75), Expect = 0.007 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 383 NILVTGL-GPAGFSLSYYLLRSGHNVVAIDGL 413 LVTG G GF +S LL +GH VV ID L Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNL 33
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.5 bits (63), Expect = 0.033 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 25/99 (25%) Query: 49 IEGITEIGENTVIYPFSSIGQPPQILKYANERSSTIIGSNNTIR-EYVTVQAGSQGG--- 104 +EG+ +I N Y F+ Q+L + N SS ++GS+N I E V++ G GG Sbjct: 277 VEGVADIDPN---YKFN------QLLIHNNALSSVLMGSHNGIEPEKVSLLYGGNGGPGA 327 Query: 105 --------GMVTRVGNNNLFMVGVHIGHDCKIGNNVVFA 135 G + GNN ++ VH+ K G+ +V A Sbjct: 328 RHDWNATVGYKDQQGNNVATIINVHM----KNGSGLVIA 362
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 94.5 bits (235), Expect = 2e-24 Identities = 53/250 (21%), Positives = 102/250 (40%), Gaps = 27/250 (10%) Query: 51 KQAFAGMMTYLALLFLTFLSL-----TSYAKPKIVVSITPIGSIVSMLVKDKADIESLAI 105 K+ ++ +L+ + L + TS K K+V + + I I + DK D+ S+ Sbjct: 2 KKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVP 61 Query: 106 SSDCPHHYNLKPSDLVKVKNSDIAIYI--------NEQFDGFAEKLIDNYSKNIIKISDI 157 PH Y P D+ K +D+ Y N F E +K+ +SD Sbjct: 62 IGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDG 121 Query: 158 KSLTTI-------KDNWHIWLDLNNAVILLQEFARIFSENFPELQEDINNNLSTALKELN 210 + + K++ H WL+L N +I + A+ S P +E NL +L+ Sbjct: 122 VDVIYLEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLD 181 Query: 211 KLQEIKNNELATI----KDVILLSDSSEYFFLNTNIKTAKLY---SESQTSLRYISKLED 263 KL + ++ I K ++ + +YF + +A ++ +E + + I L + Sbjct: 182 KLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVE 241 Query: 264 LIKESNNKCL 273 ++++ L Sbjct: 242 KLRQTKVPSL 251
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.3 bits (73), Expect = 0.018 Identities = 19/157 (12%), Positives = 48/157 (30%), Gaps = 4/157 (2%) Query: 321 TKNTKSLQKLYMQLTSAQKTIETLKSKAEKIETQIKVGGEDKNKIKKLEKKLTSKNNKAD 380 +L L A +K + +E + K ++K + + + Sbjct: 186 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 245 Query: 381 RLFQKIEK--IDIPANKISIESQETVPVTTASTQVSAFQAQQARINEAQQGVLVQKNQQH 438 + +E + A + +E + ++ + + +A + + Sbjct: 246 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEA--EKADLEHQ 303 Query: 439 IAAEKTKKQRQAEDKQRTEREKKKQEAQKQLSEIKKQ 475 +Q D + KK+ EA+ Q E + + Sbjct: 304 SQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340 Score = 32.0 bits (72), Expect = 0.026 Identities = 21/193 (10%), Positives = 51/193 (26%) Query: 324 TKSLQKLYMQLTSAQKTIETLKSKAEKIETQIKVGGEDKNKIKKLEKKLTSKNNKADRLF 383 L + +K +E + + +IK +K ++ + +L A Sbjct: 147 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 206 Query: 384 QKIEKIDIPANKISIESQETVPVTTASTQVSAFQAQQARINEAQQGVLVQKNQQHIAAEK 443 + + + + + A + Sbjct: 207 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 266 Query: 444 TKKQRQAEDKQRTEREKKKQEAQKQLSEIKKQEQAIKTAADKAKEVAASAKKETSRTALR 503 + + K EA+K E +K + ++ A + + SR A + Sbjct: 267 KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKK 326 Query: 504 TMQDKMNGYSEQL 516 ++ + EQ Sbjct: 327 QLEAEHQKLEEQN 339
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 39.8 bits (92), Expect = 8e-06 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 14/102 (13%) Query: 162 HPEKYNFNYYISG---SEEIAPIKIFDDGEFTYLQFRDKNAEISGIFAVDDSLRESLVNY 218 +P N+NYY + S+ I P +IFDDG FTY F++ + IF V + S+ + Sbjct: 395 NPVPRNYNYYQAPEKRSKHIMPSEIFDDGTFTYFGFKNITLQ-PAIFVVQPDGKLSMTD- 452 Query: 219 RLAQDNPNMVIL-------EQVFPKLAIRKGKKVTCVFNQSF 253 A +PNM ++ K + K K + V N+ + Sbjct: 453 --AAIDPNMTNSGLRWYRVNEIAEKFKLIKDKALVTVINKGY 492 Score = 33.6 bits (76), Expect = 6e-04 Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 61 IELARDEEIVSISMGDTTSWQIVPAGHRIFIKP 93 I+L +DE I I+ G W IVP + IFI+P Sbjct: 67 IQLEKDETISYITTGFNKGWSIVPNSNHIFIQP 99
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 193 bits (493), Expect = 3e-64 Identities = 42/211 (19%), Positives = 68/211 (32%), Gaps = 2/211 (0%) Query: 22 KSGEYFIDARKWYNFKYILPLSHRSLLLLICTIFTLLLTLICININILLPTNQKVSYLIK 81 + YF +A W K + L ++ + L T + + L P Y+I Sbjct: 9 ELKAYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVIT 68 Query: 82 DDAEKQAA-ITNTKHSTLANPYI-SVANIMLQNYVNQREEYNYDILKEQFTFIKNASTSI 139 D A I H Y +V L YV RE + +E F + S Sbjct: 69 VDRNTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARP 128 Query: 140 VYMQFANFMHIDNPLSPVIRYQKLYRRSINILSINNINDNEAVVTFESLAKNSTGAILEN 199 +++ F DNP SP + I ++ + N A V F + + + + Sbjct: 129 EQDRWSRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNSTKTD 188 Query: 200 MVWEARIGFIMDSISTSTSPDMPFNFTVTSY 230 V + P + V SY Sbjct: 189 AVATIKYKVDGTPSKEVDRFKNPLGYQVESY 219
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 179 bits (456), Expect = 1e-58 Identities = 39/209 (18%), Positives = 82/209 (39%), Gaps = 4/209 (1%) Query: 36 TQNWYEERSDKLLVQRNLLIILIILLTIFMVISTLVIAFVVKSKQFDPFVIQLNSNTGRA 95 +W ++ + L ++ + + +A + K +P+VI ++ NTG A Sbjct: 17 AASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEA 76 Query: 96 SVVEPISSP-VLTTDESLTRYFIKKYITARETYNPVDFATIARTTIRLFSTSSVYYNYLG 154 S+ + +T DE++ +YF+ Y+ RE + + + S + Sbjct: 77 SIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAR-EEYFDAVMVMSARPEQDRWSR 135 Query: 155 YIR-NKDFDPTLKYKEENTTFLVIKSWSKIAADKYIVRFSVNETSGNQL-VYNKIAVVSY 212 + + + P F+ IK S + + V F+ +G+ + +A + Y Sbjct: 136 FYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNSTKTDAVATIKY 195 Query: 213 AYVPMQLTDSELDVNPVGFQVNGYRVDDD 241 + + NP+G+QV YR D + Sbjct: 196 KVDGTPSKEVDRFKNPLGYQVESYRADVE 224
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.3 bits (70), Expect = 0.001 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Query: 71 IEFAKNEEIQNIILGDAYAWKITPLANRLFIKPLEKDIRTNM 112 I+ K+E I I G W I P +N +FI+P K +++N+ Sbjct: 67 IQLEKDETISYITTGFNKGWSIVPNSNHIFIQP--KSVKSNL 106 Score = 27.4 bits (60), Expect = 0.029 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 93 TPLANRLFIKPLEKDIRTNMTIITNKRIYEFDIASTELMMGNERDLVYVIKFYYPKKN 150 +P N + + P + RTN+ + TNK +Y+F + + N +K YP+++ Sbjct: 262 SPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQ--KDNFASAYLTVKLEYPQRH 317
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 32.6 bits (74), Expect = 0.002 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 1/82 (1%) Query: 67 QIPSNIVKPVMEVD-DNIPEIPKLPDPPKLETPTAPPPPPVVKVPPVLPPTTPVEENKDK 125 P +V+P E + P K + P P PV KV PVE Sbjct: 68 PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPAS 127 Query: 126 TFPLPPVSLPSTSGTLVESDAE 147 F + P++S + Sbjct: 128 PFENTAPARPTSSTATAATSKP 149