PredictBias

identification of genomic and pathogenicity islands in prokaryotic genome
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A) Input parameters
Genome2477.gbkThreshold dinucleotide bias2
Threshold codon bias4Threshold %GC bias3
E-value (RPSBlast)0.05Genome (non-pathogenic)
 
B) Compare a potential GI or PAI in related non-pathogenic sp. (phylogenetic tree)
Potential GI or PAI start    end  
Select Organism     
 
C) Potential GIs and PAIs in NC_004606 (download)
S.NoStartEndBiasVirulenceInsertion elementsPrediction
1SPs0132SPs0139Y        Y        NPathogenicity Island (biased-composition)
2SPs0275SPs0284Y        NNGenomic Island
3SPs0410SPs0451Y        Y        YPathogenicity Island (biased-composition)
4SPs0500SPs0584Y        Y        YPathogenicity Island (biased-composition)
5SPs0597SPs0675Y        Y        YPathogenicity Island (biased-composition)
6SPs0712SPs0726Y        Y        YPathogenicity Island (biased-composition)
7SPs0755SPs0766Y        Y        NPathogenicity Island (biased-composition)
8SPs0872SPs0904Y        Y        YPathogenicity Island (biased-composition)
9SPs0913SPs0939Y        Y        NPathogenicity Island (biased-composition)
10SPs0961SPs0977Y        Y        NPathogenicity Island (biased-composition)
11SPs1058SPs1073Y        Y        NPathogenicity Island (biased-composition)
12SPs1089SPs1103Y        Y        NPathogenicity Island (biased-composition)
13SPs1113SPs1173Y        Y        YPathogenicity Island (biased-composition)
14SPs1280SPs1293Y        Y        NPathogenicity Island (biased-composition)
15SPs1314SPs1327Y        NNGenomic Island
16SPs1364SPs1376Y        Y        NPathogenicity Island (biased-composition)
17SPs1456SPs1482Y        Y        NPathogenicity Island (biased-composition)
18SPs1509SPs1514Y        NNGenomic Island
19SPs1543SPs1564Y        Y        NPathogenicity Island (biased-composition)
20SPs1641SPs1662Y        Y        YPathogenicity Island (biased-composition)
21SPs1675SPs1710Y        Y        NPathogenicity Island (biased-composition)
22SPs1743SPs1748Y        NNGenomic Island
23SPs1765SPs1776Y        Y        YPathogenicity Island (biased-composition)
24SPs1814SPs1828Y        Y        NPathogenicity Island (biased-composition)
25SPs0080SPs0087N        Y        NPathogenicity Island (unbiased-composition)
26SPs0179SPs0186N        Y        NPathogenicity Island (unbiased-composition)
27SPs0302SPs0308N        Y        NPathogenicity Island (unbiased-composition)
28SPs0654SPs0666N        Y        NPathogenicity Island (unbiased-composition)
29SPs0674SPs0689N        Y        NPathogenicity Island (unbiased-composition)
30SPs1546SPs1553N        Y        NPathogenicity Island (unbiased-composition)
31SPs1603SPs1610N        Y        NPathogenicity Island (unbiased-composition)
32SPs1698SPs1703N        Y        NPathogenicity Island (unbiased-composition)
33SPs1719SPs1733N        Y        NPathogenicity Island (unbiased-composition)
34SPs1802SPs1807N        Y        NPathogenicity Island (unbiased-composition)

 
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