Bioinformatics.Org
Professional Membership

Your donations keep Bioinformatics.Org online!
I pledge to donate (USD)...

 $
Not logged in
  • Log in
    		•

    The Organization
  • About us
  • Membership (26166+)
  • Hosted groups (402)
  • Bioinformatics courses
  • Core Facility
  • Career Center
  • Wiki New!
  • Newsletter New!
  • Franklin Award
  • Sponsorship
  • Contribute
    		•

    Research
    Online databases
  • EST clusters
  • Immigrant genes
  • Leukemia genes
  • p53 tumor protein gene
  • Pancreatic cancer genes
  • Staph. aureus microarrays
  • TB drug targets
  • Acronyms

    • Online analysis tools
  • COMBOSA3D: Molecule coloring
  • JaMBW: Mol. Biol. workbench
  • PeCoP: Conserved positions
  • PrimerX: Mutagenic primers
  • Savvy: Plasmid map drawing
  • SeWeR: Sequence analysis
  • Sequence Extractor
  • SMS 2: Sequence manipulation

    • Links to Linux software
    All information groups

    Development
    Group hosting [?]
  • All software projects
  • FTP repository
  • SVN repository [?]
  • CVS repository [?]
  • Mailing lists
    		•

    Education
    New! Bioinformatics courses
    Bioinformatics FAQ

    Store
    Bioinformatics bookstore

    Forums
    News & Commentary
  • Submit
  • Archives
  • Subscribe

    • Jobs Forum
    (Career Center)
  • Submit
  • Archives
  • Subscribe

    • Bulletin Board
  • Mailing list
  • Archives

    • Bioclusters
  • Mailing list
  • Archives

    • Biodevelopers
  • Mailing list
  • Archives

    • Molecular visualization
  • Mailing list
  • Archives
    		•

    Other resources

    BioMail

    BioBanner

      bioinformatics information projects (0)
    		 Key to Software Environments
     
     Other Environment
     Linux/Unix Console
     Linux/Unix X/Graphical
     Windows
     Web Environment
     MacOS
     PalmOS
     BeOS
    Advaitha (empty) (C)
    Windows
    Ampred - Welcome to Ampred server,which predicts the Antimicrobial activity of given sequence. The activity may be antifungal, antiviral and antibacterial .This server works based on Multidimensional signatures of antimicrobial peptides (Yount and Yeaman.2004). (Other Language)
    Other Environment
    Amrita Bio-Informatics Society (empty) (Other Language)
    Other Environment
    Analytical Chemists in food (empty) (Other Language)
    WindowsWeb Environment
    Antisense Database (empty) (Perl, PHP, Unix Shell)
    Linux/Unix ConsoleLinux/Unix X/GraphicalWeb Environment
    Application Validation Documents - These documents may be useful as examples to help validate your application in compliance with FDA GxP regulations. (Other Language)
    Other Environment
    ARGO: Antibiotic Resistance Gene Online - ARGO (Antibiotic Resistance Genes Online) is intented to be a comprehensive web Resource for Scientists, Clinicians and other people who are interested in the looming problem of rise and spread of antibiotic resistant pathogens worldwide. (Other Language)
    Other Environment
    ASID: Arabidopsis System Interaction D/B - We have derived novel clustering algorithm taking into consideration certain biological assumptions like conditional coregulation and properties of microarray data, uploaded at website www.asidb.com. Gene can be queried (only for Carbohydrate). (Other Language)
    Other Environment
    Atlas: Integrated database project - The Integrated Database Project is an effort to integrate multiple forms of biological, publication and ontological data under one query space for data mining. At its core sit relational databases whose tables model the data structure of the information. (Other Language)
    Other Environment
    AYURVEDA: Virtual drug develop. (empty) - We are developing obesity control drug form taditional inadian medicinal plants, becouse medicines from plants have less side effects compare to allopathy medicines (Perl, Python, Unix Shell)
    Linux/Unix ConsoleLinux/Unix X/Graphical
    Ayurvedic database (empty) (Other Language)
    Other Environment
    Barjis Petrinet Lab (empty) (Other Language)
    Other Environment
    BhambriBII and Underscores (empty) (Other Language)
    Other Environment
    Binosys Technologies (empty) (Other Language)
    Other Environment
    Bio-Informatics Tutorial - A nascent tutorial on bio-informatics, currently covering molecular biology basics and advanced topics like genomics. The project files will be updated every fortnight (2 weeks). Contributions welcomed. (Other Language)
    Other Environment
    BIO-INNOVATORS: osteoporosis (empty) (Other Language)
    Other Environment
    Bioclues (Other Language)
    Other Environment
    Bioinformatics Algorithms Research (Other Language)
    Other Environment
    Bioinformatics Education (empty) (Other Language)
    Other Environment
    Bioinformatics for Bioremediation (Other Language)
    Other Environment
    Bioinformatics Needs Assessment Group - SERVING the bioinformatics requirements of experimentalists. DEFINING best practice. PROMOTING basic training. PROVIDING a service. (Other Language)
    Other Environment
    Bioinformatics Software Testing (empty) (Other Language)
    Other Environment
    BioInformatics Workbench (empty) - This project aims to create a list of functional requirements and technical specifications (flowcharts, classdiagrams, etc.) for the development of a complete workbench solution created in .NET/C# for researchers, students and others who are interested. (Other Language)
    Windows
    Bioinsilico:Drug target database (empty) (PHP, Java)
    Windows
    BioLore: A knowledgebase (empty) (Other Language)
    Other Environment
    BIOMAP Project (listed) (Perl, PHP, Java)
    Linux/Unix Console
    Bioscys (empty) - promote the knowledge and application of bioinformatics in third world countries (Other Language)
    Other Environment
    BiOSoA (empty) (Other Language)
    Other Environment
    BLGM - BioLinux Goes Mobile (Perl, Python, Java)
    Linux/Unix X/GraphicalWeb Environment
    Cancer (empty) (Other Language)
    Windows
    Cardiovascular genes database (empty) - Cardiovscular Gene Database provide you with VISTA system for the investigators in the Cardiovascular biology and pharmacology community. (Other Language)
    Other Environment
    ChemChains: Simulation & analysis of logical models (C++)
    Linux/Unix ConsoleWindowsMacOS
    ckr5 protein protein interaction (empty) (Other Language)
    Other Environment
    Clinical Data Management Group (empty) (Other Language)
    Other Environment
    Computational Thinking in Life Sciences (Other Language)
    Other Environment
    Cyprus Visioneers Group (empty) (Other Language)
    Other Environment
    Database of Antibiotics (empty) (Other Language)
    Other Environment
    Dengue Drug Target Database (Other Language, Perl, PHP)
    Other EnvironmentLinux/Unix ConsoleLinux/Unix X/GraphicalWindowsWeb Environment
    DrugGenesis: Avian influenza DB (empty) (Other Language)
    Other Environment
    FindtRNA (Java)
    Linux/Unix X/GraphicalWindowsWeb Environment
    FishermansFriend (empty) (Other Language)
    Other Environment
    Formal Ontology in Biology (Other Language)
    Other Environment
    Functional Annotation of SCOP (empty) (Perl, PHP)
    Web Environment
    Gene aliases disambiguation (Perl)
    Linux/Unix Console
    Gene Duplication (empty) (Other Language)
    Other Environment
    Gene Prediction Data Consortium - Data sets for training gene-finding software. (Other Language)
    Other Environment
    Gene Wiki (PHP)
    Web Environment
    Genetical addressing open (empty) (Other Language)
    Other Environment
    Genome Assembly Study Group - I think there is a need of a open forum especially made for genome assembly people so that we can share the knowledge with the world. (Other Language)
    Other Environment
    GlutamineBase (empty) (Other Language)
    Other Environment
    HaploCheck (listed) (Other Language)
    Other Environment
    HistoCheck (empty) (Other Language)
    Other Environment
    Immigrant genes database - The Immigrant genes database contains genes that have immigrated or been transferred from one species to another. Such knowledge is useful for studies that rely on phylogenetic and/or sequence similarity information. (Other Language)
    Other Environment
    In-depth mining of microarray data via hybrid SOM-SVD (Other Language)
    Other Environment
    Jmol Tutorial Authoring Template (JTAT) - Overview of available authoring tools for online macromolecular structure tutorials that utilize Jmol, and the home of one particular authoring template, JTAT. (Other Language)
    Linux/Unix ConsoleWindowsWeb EnvironmentMacOS
    Kaushik's Bioinfo. & Genomic (empty) (Perl, Visual Basic)
    Windows
    La perception des couleurs par l'oeil - A science research project at the french school in brussels, created for the TPE projects in the french system. Deals with the perception of colors by the human eye. All information will be available to the public, but only in French. (Other Language)
    Other Environment
    Language benchmark (Other Language, C, C++, Perl, Python, Java)
    Linux/Unix ConsoleWindowsMacOS
    LECB 2DgelDataSets database - The LECB 2-D PAGE gel images database is for public use. It contains data sets from 4 types of experiments with 338 gif images with annotation and landmark data (various formats). It could be used for comparison with user data or software development. (Other Language)
    Other Environment
    Lectures in molecular biology (empty) (Other Language)
    Other Environment
    Leukemia genes database - A database of leukemia genes (Other Language)
    Other Environment
    Ligand Database (listed) - Beta version of Ligand Database. (PHP, Unix Shell, Java)
    Web Environment
    Lung Cancer Gene Database - LuGenD is developed to help the Biological and Medical Sciences community to easily access all information on the genes that are involved in Lung Cancer. (Other Language)
    WindowsWeb Environment
    M.A.M.B.O (empty) (Other Language)
    Other Environment
    MACFAST BI & CB Group (Other Language)
    Other Environment
    Malaria Drug Targets (Other Language)
    Other Environment
    Matrix (empty) (Other Language)
    Other Environment
    Mattree: Phylogenetic analysis - Phylogenetic analysis tools for distance matrix based clustering and comparison of trees. (C++)
    Web Environment
    MBAB bioinformatic group (empty) (C++, Perl)
    Linux/Unix ConsoleWindows
    MBRC (empty) - * Knowledge and Technology Infrastructure for Marine Biological Resource Center(s)MBRC(s): Focusing on integration of presently separate knowledge bodies and technology platforms for monitoring , inventoring and managing biodiversity and bioprospecting. (Other Language)
    Other Environment
    MCL-Dict (empty) (Other Language)
    Other Environment
    MetaBasis - MetaBasis: A web based database (Basis) containing metadata (Meta) on software tools and databases in the field of Bioinformatics. Work done by: Vassilis Atlamazoglou PhD, Trias Thireou PhD, Yannis Hamodrakas MSc and George Spyrou PhD (Other Language)
    Web Environment
    Microsatellite Suite (empty) (C, Perl)
    Linux/Unix ConsoleLinux/Unix X/GraphicalWindowsWeb Environment
    Molecular Visualization EMail List - EMail list only: none of the Public Area resources are used. (Other Language)
    Other Environment
    MolSlide Support - ProteinExplorer.Org (PE) makes slides of rotatable macromolecular structure views (MolSlides.Org). (PE) works on-line or off-line (from a downloaded copy) except for saving MolSlides. This project will facilitate saving MolSlides in more situations (Other Language)
    Web Environment
    NETTAB Workshops (listed) - A series of workshops on advanced network tools for bioinformatics. First edition 2001: CORBA and XML Last edition 2008: Bioinformatics Methods for Complex System Applications Next edition 2009: Collaborative and Social Research and Development (Other Language)
    Other Environment
    Ontologizer Computational Biology(empty) (C, C++, Perl, Unix Shell, Java)
    Linux/Unix ConsoleLinux/Unix X/Graphical
    Open Access India (Other Language)
    Linux/Unix X/GraphicalWindowsWeb Environment
    OpenBNS: Naming service (listed) - The Biomolecule Naming Service (BNS) is an LDAP directory of gene and protein information derived from NCBI's LocusLink database. The purpose of BNS is to quickly and easily convert between different name and identifier schemes. (Other Language)
    Other Environment
    OpenMMS Users Group (empty) - OpenMMS (although defunct) has many nice features. Sure, you may use 'DBLoader', but can you make it work?... Perhaps I should rename this list... (Other Language, C, C++, Perl, PHP, Unix Shell, Java)
    Linux/Unix ConsoleLinux/Unix X/GraphicalWindows
    Operon Group at UFSM - The Operon Group is constituded of undergraduate students of Biology, Biochemistry, Informatics and Public Relations courses at the Federal University of Santa Maria (www.ufsm.br). More information in www.bioinformatics.org/operon/ (Other Language)
    Other Environment
    Orlania Project (empty) (Other Language)
    Other Environment
    OX2 Bioinformatics (empty) - Cybernetic & Logitronic concepts to formulate variables (input/output) computations for the oxygen element throughout its electrochemical behavior, inside and outside the body. (C++, PHP, Python, Unix Shell, Java, AppleScript, Visual Basic)
    Linux/Unix X/GraphicalWindowsWeb EnvironmentMacOS
    p53 Data Warehouse (Other Language)
    Other Environment
    Pancreatic cancer genes database - A database of pancreatic cancer genes (Other Language)
    Other Environment
    PES: Project For Endangered Species - PES: Project For Endangered Species web based server side scripting backend with mysql or pgsql database. cataloging species and searching, adding functions. (Perl, PHP, Python)
    Other EnvironmentWeb Environment
    Pharmaceutical Proteome (empty) (Other Language)
    Other Environment
    PhilBioinformaticsOrg (empty) - The Network for Integrative Multidisciplinary Bioinformatics Utilization Strategies (NIMBUS)-The Philippines' Bioinformatics Initiative (Other Language)
    Other Environment
    Pie Lab (empty) (Perl)
    Linux/Unix X/GraphicalWindows
    POEM (C++, Perl)
    Linux/Unix ConsoleWindows
    Pool Models for Tracer Data (empty) (C++, Perl, PHP, Unix Shell)
    Linux/Unix ConsoleWindows
    Preclinical data management (empty) (Other Language)
    Other Environment
    primer3 Interest Group (empty) (Other Language)
    Other Environment
    Proscurator: Prostate oncogene (empty) - catalogs the available known prostate oncogenes. (Other Language)
    Other Environment
    Protein Functions Group (empty) (Other Language)
    Other Environment
    Proteopedia-list - EMail list for the community of users of Proteopedia.Org. Proteopedia is hosted at the Weizmann Institute of Science (Israel). (Other Language)
    Other Environment
    Regulatory Network Program (empty) (Perl)
    Linux/Unix Console
    Roskilde University Centre MMR (empty) (Other Language)
    Other Environment
    S.aureus microarray meta-database (PHP, Java)
    Web Environment
    Sequence search mailing list - The mailing list to ask all your SEQUENCE SEARCHING questions! (Other Language)
    Other Environment
    SolanGENE: Software listing (listed) (Other Language)
    Other Environment
    StemNet - The StemNet project aims at designing and constructing a knowledge management system for the field of stem cell biology. Its goal will be to increase security and the quality of clinical treatment based on enhanced, web-based information supply. (Other Language)
    Other Environment
    Structural Classification Of Ligands - The objective of the SCOL project is to produce a global hierarchical clustering of all the available small molecules and protein ligands using measures of structural and chemical 'similarity' between molecules. (Other Language)
    Other Environment
    Systems Bio Lab (empty) (Other Language)
    Other Environment
    Tb Drug Target Database - This Database will give details of Drugs and the targets involved in the treatment of TB. (Other Language)
    Other Environment
    Telemedicine Research Laboratory (empty) - Telemedicine Research Laboratory began its activities in the year 2000 at Bangalore, India. Some of the key objectives was to use technology for humanitarian purposes and synergise with international organisations like ITU and ISO. (Other Language)
    Other Environment
    TPE des 1ères S du LFB 2001-2002 - Un "catalogue" de tous les TPE créés par les élèves de 1ère S au Lycée Francais de Belgique, pendant l'année scolaire 2001-2002. (Other Language)
    Other Environment
    TraceGD - Trace Genetic Disease detects position and type of the mutation when disease causing protein sequences are given as input and displays original and mutated amino acid sequences with the probable diseases. (Java)
    Linux/Unix X/GraphicalWindowsWeb Environment
    TraceViewer (listed) - TraceViewer provides several functionalities needed by any biologist who wants to efficiently analyse his/her trace data. (Other Language)
    Windows
    Transcription regulation analysis tools (Perl)
    Linux/Unix Console
    Transcription regulation in plants (Other Language, Perl)
    Other EnvironmentLinux/Unix Console
    TRG (Python, Java)
    Linux/Unix Console
    UCD Bioinformatics & Comp. Biomedicine (Other Language, C)
    Other Environment
    UniDPlot: UniDimensional Plot (Other Language)
    Linux/Unix X/GraphicalWindowsMacOS
    WikiPoson - Wikiposon is a collective framework to gather informations about TE, for study them or only to learn things. It is free to read but a registration is requested to edit the scientific content. (Other Language)
    Other EnvironmentWeb Environment
    Your Lab Data: LIMS + ELN (listed) - Your Lab Data is a free web-based LIMS (Laboratory Information Management System), aimed at a typical small molecular biology laboratory. It allows lab group members to have their own private forum, events (training or meetings), ELN and a LIMS area. (PHP, Java)
    Web Environment
    zEST: Gene discovery by EST clusters - The goal of this project is to discover new genes or splice variants from bioinformatic analysis on EST (Expressed Sequence Tag) hoping the interest of biologist for "wet" analysis on the produced data. (Other Language)
    Other Environment
    Can't find the program you're looking for here? Try our Software Registry for Free/Open Source programs world-wide.

     
    Acknowledgments

    We wish to thank the following for their support:

    [eXludus Technologies]
    [Bioinformatics: Methods Express]
    [Become a sponsor]