• Reimplemented gdata infrastructure. All users should update to this version because it is no longer compatible with previous gdata format. The data release have also been updated.
• More association tests included: a partial list of ''rvtests'' and a QuickRegression routine.
• Development moved to github.com to take advantage of its “issue” tracker system for interaction with users.

Fix a critical regression bug that makes --proportion_detrimental crippled under default setting of --def_disruptive

• Update default parameters to implement the European demographic model recently published [Gazave et al (2013)] for spower simulate
• Add --replicate -1 option to allow for calculating average power/sample size estimates over the entire input data file
• Add --missing_unlisted option to include a list of variants that mimics the exome chip design

• Implement the truncated selection coefficient distribution (Kyrukov et al 2009) model. See updated spower simulate -h
• Color optimization for plots

• Command interface change, with improved naming convention for phenotype models
• Significant improvement on storage data format for haplotype pools
• Add spower simulate command. Now SEQPower has two versions: “Lite” (without this command) and “Full” (with this command).
• Add spower execute --plot command
• spower show is now compatible with SEQPower database input file

• Improved format for spower show output result
• Change output for GroupWrite to haplotypes; the minor allele count genotype output is still available with an additional switch --recode on
• Add --limit switch to restrict calculation to specified number of association units
• Add more simulated data set. Users need to completely update all haplotype pools data as the binary data format with release 1.0 beta are no longer supported
• Improved installation package for MacOSX

Various minor bug fixes

First public release of SEQPower