Software

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== Popular software for bioinformatics ==
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Everyday bioinformatics is done with sequence search programs like [[BLAST]], sequence analysis programs, like the [[EMBOSS]] and [[Staden Package|Staden]] packages, structure prediction programs like [[THREADER]] or [[PHD]] or molecular imaging/modelling programs like [[RasMol]] and [[WHAT IF]].
Everyday bioinformatics is done with sequence search programs like [[BLAST]], sequence analysis programs, like the [[EMBOSS]] and [[Staden Package|Staden]] packages, structure prediction programs like [[THREADER]] or [[PHD]] or molecular imaging/modelling programs like [[RasMol]] and [[WHAT IF]].
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More:
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* [[NetSurfP]] - Protein Surface Accessibility and Secondary Structure Predictions
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* [[NetTurnP]] - Prediction of Beta-turn regions in protein sequences
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* [[MODELLER]] - Used for homology or comparative modeling of protein three-dimensional structures
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* [http://autodock.scripps.edu/ AutoDock] - Suite of Automated Docking Tools
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* [http://www.gromacs.org/ Gromacs] - A molecular dynamics package primarily designed for biomolecular systems such as proteins and lipids
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==  Popular Linux OS distributions for bioinformatics ==
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* [http://www.gentoo.org/ Gentoo Linux] ([http://packages.gentoo.org/category/sci-biology?full_cat List of bioinformatics packages])
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* [http://bioknoppix.hpcf.upr.edu/ Bioknoppix]
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* [http://biopuppy.org BioPuppy] - A Minimal Linux OS for Bioinformatics
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* [http://nebc.nox.ac.uk/tools/bio-linux/bio-linux-5.0 BioLinux]
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* [http://opendiscovery.org.in Open Discovery] - An integrative bioinformatics linux distro with high performance computing capability
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* [http://www.bioslax.com/ Bioslax]
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Generic yet popular distributions:
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* [http://www.ubuntu.com/ Ubuntu]
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* [http://fedoraproject.org/ Fedora]
==See also==
==See also==
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* [[3D structure visualization]] software.
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* [[:Category:Software]]
* [[Research and development topics]] (including links to software)
* [[Research and development topics]] (including links to software)
* [[Bioinformatics FAQ]]
* [[Bioinformatics FAQ]]
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For a list of software (derived from [[SEQwiki]]), click here [[Software/list]].
==External links==
==External links==
* [http://www.bioinformatics.org/software/mol_linux.php3 Molecular Linux (original listing)]
* [http://www.bioinformatics.org/software/mol_linux.php3 Molecular Linux (original listing)]
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* [http://www.facebook.com/pages/SeqChallange/217316754955635 SeqChallenge]
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* [http://in-silico.net In-Silico Online] Online bioinformatic tools

Revision as of 11:55, 28 July 2011

Contents

Popular software for bioinformatics

Everyday bioinformatics is done with sequence search programs like BLAST, sequence analysis programs, like the EMBOSS and Staden packages, structure prediction programs like THREADER or PHD or molecular imaging/modelling programs like RasMol and WHAT IF.

More:

Popular Linux OS distributions for bioinformatics

Generic yet popular distributions:

See also

For a list of software (derived from SEQwiki), click here Software/list.

External links

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