cluster # 1009

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Anopheles gambiae
cluster # 1009 cluster # 1009 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1009#0 length = 389 sequences # 1

consensus_1009#1 length = 186 sequences # 1

consensusID : consensus_1009#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [TTTTCTTTCTTTTCAACTTTCTTATATTTCTCTTTTCTCAAACACTACAACAACATAACCTTATTCTTTCTCTTCCTATTCCTTTTTTTCACCCTACTCAACCTACTTTCCATCTTCTACTTTTTCATCCTTTCACTATATCTACTTTAACTTCTTTTACATTTCATCTCTATACTTCTTATTTCTTATTCCTTACACTATCTTTTTTTATACTTCTTTTTCCTTTTCTAACATCAAACCCCAAATTTTTTCCATCTTTCTTATCTTTTCATCCTTTAATATTCCTTTTAATTTTATTACCAAATACTTCTTCCAATCAATAAACCAAATCTATATTTTTACCATTTCTACCTTTTCCATCTTCATCTCTTTTCTTTTTTTCTTTTCTT]

[+] EMBL CNS09IB4             [TTTTCTTTCTTTTCAACTTTCTTATATTTCTCTTTTCTCAAACACTACAACAACATAACCTTATTCTTTCTCTTCCTATTCCTTTTTTTCACCCTACTCAACCTACTTTCCATCTTCTACTTTTTCATCCTTTCACTATATCTACTTTAACTTCTTTTACATTTCATCTCTATACTTCTTATTTCTTATTCCTTACACTATCTTTTTTTATACTTCTTTTTCCTTTTCTAACATCAAACCCCAAATTTTTTCCATCTTTCTTATCTTTTCATCCTTTAATATTCCTTTTAATTTTATTACCAAATACTTCTTCCAATCAATAAACCAAATCTATATTTTTACCATTTCTACCTTTTCCATCTTCATCTCTTTTCTTTTTTTCTTTTCTT]




>consensus_1009#0
TTTTCTTTCTTTTCAACTTTCTTATATTTCTCTTTTCTCAAACACTACAACAACATAACC
TTATTCTTTCTCTTCCTATTCCTTTTTTTCACCCTACTCAACCTACTTTCCATCTTCTAC
TTTTTCATCCTTTCACTATATCTACTTTAACTTCTTTTACATTTCATCTCTATACTTCTT
ATTTCTTATTCCTTACACTATCTTTTTTTATACTTCTTTTTCCTTTTCTAACATCAAACC
CCAAATTTTTTCCATCTTTCTTATCTTTTCATCCTTTAATATTCCTTTTAATTTTATTAC
CAAATACTTCTTCCAATCAATAAACCAAATCTATATTTTTACCATTTCTACCTTTTCCAT
CTTCATCTCTTTTCTTTTTTTCTTTTCTT

consensusID : consensus_1009#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 186
fasta sequence

                              [TTTTTTTCATTTCATTTCCTTTCTTTCTTTTCTTCTTTATTTCATATTATTACAAACTCTTCATTATCTAATCTTTCTCATCCTATTCCTTTTTTTCACCCTATTCAACCTACTTTCCATCTTCTACTTTTTCATCCTTTCACTATATCTACTTTTAACTTCTTTGTACATTGTGCATCACTTTTA]

[+] EMBL CNS08MB5             [TTTTTTTCATTTCATTTCCTTTCTTTCTTTTCTTCTTTATTTCATATTATTACAAACTCTTCATTATCTAATCTTTCTCATCCTATTCCTTTTTTTCACCCTATTCAACCTACTTTCCATCTTCTACTTTTTCATCCTTTCACTATATCTACTTTTAACTTCTTTGTACATTGTGCATCACTTTTA]




>consensus_1009#1
TTTTTTTCATTTCATTTCCTTTCTTTCTTTTCTTCTTTATTTCATATTATTACAAACTCT
TCATTATCTAATCTTTCTCATCCTATTCCTTTTTTTCACCCTATTCAACCTACTTTCCAT
CTTCTACTTTTTCATCCTTTCACTATATCTACTTTTAACTTCTTTGTACATTGTGCATCA
CTTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1009#0      TTTTCTTTCTTTTCAA---CTTTCTTATATTTCTCTTTTCTCAAACACTACAACAA---- 53
consensus_1009#1      -TTTTTTTCATTTCATTTCCTTTCTTTCTTTTCTTCTTTATTTCATATTATTACAAACTC 59
                       *** **** *****    *******   *****  *** *   * * **  ****    

consensus_1009#0      --CATAACCTTATTCTTTCTCTTCCTATTCCTTTTTTTCACCCTACTCAACCTACTTTCC 111
consensus_1009#1      TTCATTATCTAAT-CTTTCTCATCCTATTCCTTTTTTTCACCCTATTCAACCTACTTTCC 118
                        *** * ** ** ******* *********************** **************

consensus_1009#0      ATCTTCTACTTTTTCATCCTTTCACTATATCTACTTTAACTTCTTTTACATTTCATCTCT 171
consensus_1009#1      ATCTTCTACTTTTTCATCCTTTCACTATATCTACTTTTAACTTCTTTGTACATTGTGCAT 178
                      ************************************* *  *  ***  *  *  *   *

consensus_1009#0      ATACTTCTTATTTCTTATTCCTTACACTATCTTTTTTTATACTTCTTTTTCCTTTTCTAA 231
consensus_1009#1      -CACTTTTA--------------------------------------------------- 186
                        **** *                                                    

consensus_1009#0      CATCAAACCCCAAATTTTTTCCATCTTTCTTATCTTTTCATCCTTTAATATTCCTTTTAA 291
consensus_1009#1      ------------------------------------------------------------
                                                                                  

consensus_1009#0      TTTTATTACCAAATACTTCTTCCAATCAATAAACCAAATCTATATTTTTACCATTTCTAC 351
consensus_1009#1      ------------------------------------------------------------
                                                                                  

consensus_1009#0      CTTTTCCATCTTCATCTCTTTTCTTTTTTTCTTTTCTT 389
consensus_1009#1      --------------------------------------