These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1023 fasta sequence [CCGCCCACGCCGGTACAAAACGTAAAACCTAGAAGTTTATTAATGGCAGCAATTTCAATCTTCAGTCGCTTCCTTTTACGATCAAAACAGTTTGCATCCTTACGAAGCTTCCACATGTCCTCCGCACG-AGAAAG-ATCTGAAAA-G-GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC-AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGAAAAT-GTGGATAAAG-AAAAG-AAAAAGCCT-AAGTTTGGACTTGCTGAAGTGCAACGTGACTATTCGGAACTTCTC-AAACCC-AAAGCTCCACTCGGAACCG-AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGCGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAA-CACTATTCATTTCACG-CCTTTGTTAAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTTAAACATCACCATGTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGGAGAATATGATACCAAAGTAATCAATGCACAGGAAGCACAGTGTTTAGCAAATCAAGTCCAACTTTATTATTGTCAGAAGAATGTATCTAAATTGCATCTGCTTGAAACGTTTACTAGACATCCGGATAAGTTCAAACACATGGACATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGTTTTTTCTTATGAAGGTACTTAATTGTTATCAGAACATAGCTTCCT-GGGAGTCC-TGTATTGTTGTTGCAG-CCAATATATCTTGCGATAAATATACCGGGGTGCCTTCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BM589204 [CCGCCCACGCGTCCGCAAAACGTAAAACCTAGAAGTTTATTAATGGCAGCAATTTCAATCTTCAGTCGCTTCCTTTTACGATCAAAACAGTTTGCATCCTTGCGAAGCTTCCACATGTCCTCCGCACG AGAAAG ATCTGAAAA G GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGATAAT GTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTTCTGAAGTGCAACGTGACTATTCGGAACTTCTC AAACCC AAAGCTCCACTCGGAACCG AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTAGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGCGAAGGGTACGAGTTCATAATGCTACAA ] [+] EMBL CNS08NJJ [ tCGGTAAAAAACGTAAAACCTAGAAGTTTATTAATGGCAGCAATTTCAATCTTCAGTCGCTTCCTTTTACGATCAAAACAGTTTGCATCCTTACG AGCTTCCACATGTCCTCCGCACG AGAAAG ATCTGAAAA G GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGAAAAT GTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTGCTGAAGTGCAACGTGACTATTCGGAACTTCTC AAACCC AAAGCTCCACTCGGAACCG AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTGCAGACGACATTTTGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGCGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAA CACTATTCATTTCACG CCTTTGTTAAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTTAAACATCACCATGTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGGAGAATATGATACCAAAGTAATCAATGCACAGGAAGCACAGTGTTTAGCAAATCAAGTCCAACTTTATTATTGTCAGAAGAATGTATCTAAATTGCATCTGCTTGAAACGTTTACTAGACATCCGGATAAGTTCAAACACATGGACATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGTTTTTTCTTATGAAGGTACTTAATTGTTATCAGAACATAGCTTCCTGGGGAGTCC TGTATTGTTGTTGCAG CCAATATATCTTGCGA ] [+] EMBL CNS0971T [ CGGTACAAAACGTAAAACCTAGAAGTTTATTAATGGCAGCAATTTCAATCTTCAGTCGCTTCCTTTTACGATCAAAACAGTTTGCATCCTTACGAAGCTTCCACATGTCCTCCGCACG AGAAAGCATCTGAAAAGG GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGCAAAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGAAAATGGTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTGCTGAAGTGCAACGGGACTATTCGGAACTTCTC AAACCC AAAGCTCCACTCGGAACCG AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTGCA ] [+] EMBL CNS0972V [ GTACAAAACGTAAAACCTAGAAGTTTATTAATGGCAGCAATTTCAATCTTCAGTCGCTTCCTTTTACGATCAAAACAGTTTGCATCCTTACGAAGCTTCCACATGTCCTCCGCACG AGAAAG ATCTGAAAA G GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAG AAAT GTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTGCTG AGTG ] [+] EMBL CNS08VZ6 [ ccTAAAAAACGTAAAACCTAGAAGTTTATTAATGGCAGCAATTTCAATCTTCAGTCGCTTCCTTTTACGATCAAAACAGTTTGCATCCTTACG AGCTTCCACATGTCCTCCGCACG AGAAAG ATCTGAAAA G GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGAAAAT GTGGATAAAGAAAAAGAAAAAAGCCTAAAGTTTGGACTTGCTG AGTGC ACGTGACTATTCGG ACTTCTCAAAACCCAAAAGCTCCACTCGGAACCGAAAGCATC ] [+] EMBL AL694788 [ cccgaggttAAACGTAAA CTAGAAG TTATTAATGGCAGCAATTTCAATCTTCAGTCGCTTCCTTTTACGATCAAAACAG TTGCATCCTTACGAAGCTTCCACATGTCCTCCGCACG AGAAAG ATCTGAAAA G GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGAAAAT GTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTGCTGAAGTGCAACGTGACTATTCGGAACTTCTC AAACCC AAAGCTCCACTCGGAACCG AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGTGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAANCACTATTCATTTCACGCCCTTTGTTGAATTACCAGGTCCAC AAGAAAACGGCCCTGAATGTTTA ] [+] EMBL BM652302 [ ccgCGTAAAACCTAGAAGTTTATTAATGGCAGCAATTTCAATCTTCAGTCGCTTCCTTTTACGATCAAAACAGTTTGCATCCTTACGAAGCTTCCACATGTCCTCCGCACG AGAAAG ATCTGAAAA G GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGATAAT GTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTGCTGAAGTGCAACGTGACTATTCGGAACTTCTC AAACCC AAAGCTCCACTCGGAACCG AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGCGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAA CACTATTCATTTCACG CCTTTGTTGAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTTAAACATCACCATGTTTACAGAATGTTCT ] [+] EMBL CNS08N4V [ AACCTAGAAGTTTATTAATGGCAGCAATTTCAATCTTCAGTCGCTTCCTTTTACGATCAAAACAGTTTGCATCCTTACGAAGCTTCCACATGTCCTCCGCACGAATAAAG ATCTGAAAA G GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGAAAAT GTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTGCTGAAGTGCAACGTGACTATTCGGAACTTCTC AAACCC AAAGCTCCACTCGGAACCG AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGCGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAA CACTATTCATTTCACG CCTTTGTTAAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTTAAACATCACCATGTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGGAGAATATGATACCAAAGTAATCAATGCACAGGAAGCACAGTGTTTAGCAAATCAAGTCCAACTTTATTATTGTCAGAAGAATGTATCTAAATTGCATCTGCTTGAAACGTTTACTAGACATCCGGATAAGTTCAAACACATGGACATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGTTTTTT ] [+] EMBL BM576301 [ ccgGTTTATTAATGGCAGCAATTTCAATCTTCAGTCGCTTCCTTTTACGATCAAAACAGTTTGCATCCTTGCGAAGCTTCCACATGTCCTCCGCACG AGAAAG ATCTGAAAA G GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGATAAT GTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTTCTGAAGTGCAACGTGACTATTCGGAACTTCTC AAACCC AAAGCTCCACTCGGAACCG AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTAGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGCGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAA CACTATTCATTTCACG CCTTTGTTGAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTTAAACATCACCATGTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGG ] [+] EMBL CNS09QKX [ TTATTAATGGCAGCAATTTCAATCTTCAGTCGCTTCCTTTTACGATCAAAACAGTTTGCATCCTTACGAAGCTTCCACATGTCCTCCGCACG AGAAAG ATCTGAAAA G GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGAAAAT GTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTGCTGAAGTGCAACGTGACTATTCGGAACTTCTC AAACCC AAAGCTCCACTCGGAACCG AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAATGATTATA ] [+] EMBL CNS09I1E [ TTATTAATGGCAGCAATTTCAATCTTCAGTCGCTTCCTTTTACGATCAAAACAGTTTGCATCCTTACGAAGCTTCCACATGTCCTCCGCACG AGAAAG ATCTGAAAA GCGTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGAAAAT GTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTGCTGAAGTGCAACGTGACTATTCGGAACTTCTC AAACCC AAAGCTCCACTCGGAACCG AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTTCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGCGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAA CACTATTCATTTCACG CCTTTGTTAAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTTAAACATCACCATGTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGGAGAATATGATACCAAAGTAATCAATGCACAGGAAGCACAGTGTTTAGCAAATCAAGTCCAACTTTATTATTGTCAGAAGAATGTATCTAAATTGCATCTGCTTGAAACGTTTACTAGACATCCGGATAAGTTCAAACACATGGACATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGTTTTTTCTTATGAAGGTACTTAATTGTTATCAGAACATAGCTTCCT GGGAGTCC TGTATTG ] [+] EMBL CNS08LLP [ CAATCTTCAGTCGCTTCCTTTTACGATCAAAACAGTTTGCATCCTTACGAAGCTTCCACATGTCCTCCGCACG AGAAAG ATCTGAAAA G GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAAGGCACCAGAAGAAGGCCTAGCCCGGGGAGAAAAG GGGGATAAAG AAAAG AAAAAGCCga ] [+] EMBL CNS096N9 [ GTCGCTTCCTTTTACGATCAAAACAGTTTGCATCCTTACGAAGCTTCCACATGTCCTCCGCACG AGAAAG ATCTGAAAA GCGTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGAAAAT GTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTGCTGAAGTGCAACGTGACTATTCGGAACTTCTC AAACCC AAAGCTCCACTCGGAACCG AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGCGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAA CACTATTCATTTCACG CCTTTGTTAAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTTAAACATCACCATGTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGGAGAATATGATACCAAAGTAATCAATGCACAGGAAGCACAGTGTTTAGCAAATCAAGTCCAACTTTATTATTGTCAGAAGAATGTATCTAAATTGCATCTGCTTGAAACGTTTACTAGACATCCGGATAAGTTCAAACACATGGACATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGTTTTTTCTTATGAAGGTACTTAATTGTTATCAGAACATAGCTTCCT GGGAGTCC TGTATTGTTGTTGCAG CCAATATATCTTGCGATAAATATACCGGGGTGCCTTCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BM612399 [ ccgCTTGCGAAGCTTCCACATGTCCTCCGCACG AGAAAG ATCTGAAAA G GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGATAAT GTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTTCTGAAGTGCAACGTGACTATTCGGAACTTCTC AAACCC AAAGCTCCACTCGGAACCG AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTAGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGCGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAA CACTATTCATTTCACG CCTTTGTTGAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTTAAACATCACCATGTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGGAGAATATGATACCAAAGTAATCAATGCACAGG ] [-] EMBL CNS09I1F [ TACGAAGCTTCCACATGTCCTCCGCACG AGAAAG ATCTGAAAA G GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGAAAAT GTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTGCTGAAGTGCAACGTGACTATTCGGAACTTCTC AAACCC AAAGCTCCACTCGGAACCG AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGCGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAA CACTATTCATTTCAAA CCTTTGTTAAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTTAAACATCACCATGTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGGAGAATATGATACCAAAGTAATCAATGCACAGGAAGCACAGTGTTTAGCAAATCAAGTCCAACTTTATTATTGTCAGAAGAATGTATCTAAATTGCATCTGCTTGAAACGTTTACTAGACATCCGGATAAGTTCAAACACATGGACATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGTTTTTTCTTATGAAGGTACTTAATTGTTATCAGAACATAGCTTCCT GGGAGTCCGTGTATTGTTGTTGCAGCCCAATATATCTTGCGATAAATA ] [+] EMBL BM650149 [ ccgCTCCGCACG AGAAAG ATCTGAAAA G GTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGATAAT GTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTTCTGAAGTGCAACGTGACTATTCGGAACTTCTC AAACCC AAAGCTCCACTCGGAACCG AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTAGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAAATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGCGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAA CACTATTCATTTCACG CCTTTGTTGAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTTAAACATCACCATGTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGGAGAATATGATACCAAAGTAATCAATGCACAGG ] [-] EMBL CNS08NJK [ GTTGAAAGGAAAAAATCCGTACTTCGAAAAGTACGCTAGC AAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCCCGGTTAGAAAAT GTGGATAAAG AAAAG AAAAAGCCT AAGTTTGGACTTGCTGAAGTGCAACGTGACTATTCGGAACTTCTC AAACCC AAAGCTCCACTCGGAACCG AAGCATCGCGAGACATTACGCATCGCAAACTGAGTGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGCGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAA CACTATTCATTTTAC ] [+] EMBL CNS08M8D [ TC TAACCC AAAGCTCCACTCGGAACCG TAGCATCGCGAGTCATTACGCATCGCAAACTGAGTGATGTTATGCGGCTGGAGTTGATTGTAGATAAGTCTGCAGACGACATCATGCATTTATGGC ] [-] EMBL CNS09QKY [ TGCGGCTGGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTTTTGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTTTTTATACTTCCTATTCCTCGAAGCGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAA CACTATTCATTTCACG CCTTTGTTAAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTTAAACATCACCATGTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGGAGAATATGATACCAAAGTAATCAATGCACAGGAAGCACAGTGTTTAGCAAATCAAGTCCAACTTTATTATTGTCAGAAGAATGTATCTAAATTGCATCTGCTTGAAACGTTTACTAGACATCCGGATAAGTTCAAACACATGGACATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGTTTTTTCTTATGAAGGTACTTAATTGTTATCAGAACATAGCTTCCT GGGAGTCC TGTATTGTTG TGCAG CCAATATATC TGCGATAA ] [-] EMBL CNS0972W [ CAGTGTTTAGCAAATCAAGTCCAACTTTATTATTGTCAGAAGAATGTATCTAAATTGCATCTGCTTGAAACGTTTACTAGACATCCGGATAAGTTCAAACACATGGACATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGTTTTTTCTTATGAAGGTACTTAATTGTTATCAGAACATAACTTCCT GGGAGTCC TGTATTGTTGTTGCAG CCAATATATCTTGCGATAAATATACCCGGGGGCCTGCAAAAAGAGAAA ] consensusID : consensus_10176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 872 fasta sequence [CGGCCACGAGGTGAAACATTACGCATCGCAAACTGAGCTGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGTGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAACACTATTCATTTCACGCCTTTGTTGAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTTAAACATCACCAT-GTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGGAGAATATGATACCAAAGTAATCAATGCACAGGAAGCACAGTGTTTAGCAAATCAAGTCCAACTTTATTATTGTCAGAAGAATGTATCTAA-ATTGCATCTGCTTGAAACGT-TTACTAGACATCCGGATAAGTTCAAACACATGGA-CATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGT--TTTTTCTTATGAAGGTACTTAA-T-TGTTATCAGAACATAG-CTTC-CT-GGGAGTCCTGTATTGTT-GTTGCAGCCAATATATCTTGCGATAAATATACCGGGGTGCCTGC-AAAATTTTCGTTTGACTCAAGATAGTTAATCGTTTGAAAATGATTTGGAAAAGTATTGTTCATTATCGTTTCATTAGATGGAGTGCCAAAATCAAATCTTCGGTCGGTACTAATTCCATCGATGTTGAAATCTTCATCCTTAAGCAACCCATTTTTTTTTTCCGTCAAG-AAATCGTCCCTGGCAATTAGATCTACAAGAAAGGGGGATTCATC] [+] EMBL BX469621 [CGGCCACGAGGTGAAACATTACGCATCGCAAACTGAGCTGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTATTCCTCGAAGTGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAACACTATTCATTTCACGCCTTTGTTGAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTTAAACATCACCAT GTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGGAGAATATGATACCAAAGTAATCAATGCACAGGAAGCACAGTGTTTAGCAAATCAAGTCCAACTTTATTATTGTCAGAAGAATGTATCTAAGATTGCATCTGCTTGAAACGTNTTACTAGACATCCGGATAAGTTCAAACACATGGAGCATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGTAATGNGTCTTATGAAGGTACTTAAGTCTGTTATCAGAACATAGACTTC CTGGGGAGTCCTGTATNGTTGGTCGCAGCCAATATATCTTGCGATAAATATACCGGGGTGC ] [-] EMBL CNS096NA [ GATAAGTCTGCAGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGCAATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTATACTTCCTAT ] [-] EMBL CNS08M8E [ ACGCCTTTGTTAAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTTAAACATCACCATAGTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGGAGAATATGATACCAAAGTAATCAATGCACAGGAAGCACAGTGTTTAGCAAATCAAGTCCAACTTTATTATTGTCAGAAGAATGTATCTAA ATTGCATCTGCTTGAAACGT TTACTAGACATCCGGATAAGTTCAAACACATGGA CATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGT TTTTTCTTATGAAGGTACTTAA T TGTTATCAGAACATAG CTTCACT GGGAGTCCTGTATTGTT GTTGCAGCCAATATATCTTGCGATAAATATACCGGGGTGCCTGCTAAAATTTTCGTTTGACTCta ] [-] EMBL CNS0971U [ ttttATAAAGGAATCATACTGATGCGGGGAGAATATGATACCAAAGTAATCAATGCACAGGAAGCACAGTGTTTAGCAAATCAAGCCCAACTTTATTATTGTCAGAAGAATGTATCTAA ATTGCATCTGCTTGAAACGT TTACTAGACACCCGGATAAGTTCAAACACATGGA CATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGT TTTTTTTTATGAAGGTACTTAA T TGTTATCAGAACATAA CTTC CT GGGGGTCCTGTAT ] [+] EMBL CNS08L9G [ tttTTTATTATTGTCAGAAGAATGTATCTAA ATTGCATCTGCTTG AACGT TTACTAGACATCCGGATAAGTTCAAACACATGGA CATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGT TTTTTCTTATGAAGGTACTTAA T TGTTATCAGAACATAG CTTC CT GGGAGTCCTGTATTGTT GTTGCAGCCAATATATCTTGCGATAAATATACCGGGGTGCCTGC AAAATTTTCGTTTGACTCAAGATAGTTAATCGTTTGAAAATGATTTGGAAAAGTATTGTTCATTATCGTTTCATTAGATGGAGTGCCAAAATCAAATCTTCGGTCGGTACTAATTCCATCGATGTTGAAATCTTCATCCTTAAGCAACCCATTTTTTTTTTCCGTCAAG AAATCGTCCCTGGCAATTAGATCTACAAGAAAGGGGGATTCATC] [+] EMBL CNS08D7T [ TATTGTCAGAAGAATGTATCTAA ATTGCATCTGCTTGAAACGT TTACTAGACATCCGGATAAGTTCAAACACATGGA CATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGT TTTTTCTTATGAAGGTACTTAA T TGTTATCAGAACATAG CTTC CT GGGAGTCCTGTATTGTT GTTGCAGCCAATATATCTTGCGATAAATATACCGGGGTGCCTGC AAAATTTTCGTTTGACTCAAGATAGTTAATCGTTTGAAAATGATTTGGAAAAGTATTGTTCATTATCGTTTCATTAGATGGAGTGCCAAAATCAAATCTTCGGTCGGTACTAATTCCATCGATGTTGAAATCTTCATCCTTAAGCAACCCATCCAGTTTTTCCGTCAAGAAAATCGTCCCTGGCAATTAGATCTAAAAAAAAaa ] [-] EMBL CNS08LLQ [ AGACATCCGGATAAGTTCAAAAACATGGA CATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGT TTTTTCTTATGAAGGTACTTAA T TGTTATCAGAACATAG CTTC CT GGGAGTCCTGTATTGTT GTTGCAGCCAATATTTCTTGCGATAAATATACCGGGGTGCCTGC AAAATTTTCGTTTCACTCAAG ] consensusID : consensus_10176#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 294 fasta sequence [GCACAGGAAGCACAGTTGTTTAGCAAATCAAGTCCAAGCTTTTATTATTTGTCAGAAGAATGTATCTAAATTGCATCTGCTTGAAACGTTTACTAGACATCCGGATAAGTTCAAACACATGGACATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGTTTTTTCTTATGAAGGTACTTAATTGTTATCAGAACATAGCTTCCTGGGAGTCCTGTATTGTTGTTGCAGCCAATATATCTTGCGATAAATATACCGGGGTGCCTGCAAAATTTTCGTTTAGAAAAATAAATAC] [-] EMBL CNS08VZ7 [GCACAGGAAGCACAGTTGTTTAGCAAATCAAGTCCAAGCTTTTATTATTTGTCAGAAGAATGTATCTAAATTGCATCTGCTTGAAACGTTTACTAGACATCCGGATAAGTTCAAACACATGGACATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGTTTTTTCTTATGAAGGTACTTAATTGTTATCAGAACATAGCTTCCTGGGAGTCCTGTATTGTTGTTGCAGCCAATATATCTTGCGATAAATATACCGGGGTGCCTGCAAAATTTTCGTTTAGAAAAATAAATAC] [-] EMBL CNS08N4W [ ATAAGTTCAAACACATGGACATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGTTTTTTCTTATGAAGGTACTTAATTGTTATCAGAACATAGCTTCCTGGGAGTCCTGTATTGTTGTTGCAGCCAATATATCTTGCGATAAATATACCGGGG GCCTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10176#1 ------------------------------------------------------------ consensus_10176#2 ------------------------------------------------------------ consensus_10176#0 CCGCCCACGCCGGTACAAAACGTAAAACCTAGAAGTTTATTAATGGCAGCAATTTCAATC 60 consensus_10176#1 ------------------------------------------------------------ consensus_10176#2 ------------------------------------------------------------ consensus_10176#0 TTCAGTCGCTTCCTTTTACGATCAAAACAGTTTGCATCCTTACGAAGCTTCCACATGTCC 120 consensus_10176#1 ------------------------------------------------------------ consensus_10176#2 ------------------------------------------------------------ consensus_10176#0 TCCGCACGAGAAAGATCTGAAAAGGTTTTAGAAGAGTTGAAAGGAAAAAATCCGTACTTC 180 consensus_10176#1 ------------------------------------------------------------ consensus_10176#2 ------------------------------------------------------------ consensus_10176#0 GAAAAGTACGCTAGCAAAATCGCCGCGGTGCAGCAAAATTCACCAGAAGAATTCCTATCC 240 consensus_10176#1 ------------------------------------------------------------ consensus_10176#2 ------------------------------------------------------------ consensus_10176#0 CGGTTAGAAAATGTGGATAAAGAAAAGAAAAAGCCTAAGTTTGGACTTGCTGAAGTGCAA 300 consensus_10176#1 -------------------------------------------CGGCCACGAGGTGAAAC 17 consensus_10176#2 ------------------------------------------------------------ consensus_10176#0 CGTGACTATTCGGAACTTCTCAAACCCAAAGCTCCACTCGGAACCGAAGCATCGCGAGAC 360 consensus_10176#1 ATTACGCATCGCAAACTGAGCTGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTGC 77 consensus_10176#2 ------------------------------------------------------------ consensus_10176#0 ATTACGCATCGCAAACTGAG-TGATGTTATGCGGCTGGAGTTGATTGAAGATAAGTCTGC 419 consensus_10176#1 AGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGC 137 consensus_10176#2 ------------------------------------------------------------ consensus_10176#0 AGACGACATCAAGCATTTATGGCTGGAATATCATAGGGATAAAGATGTCATAACGGCTGC 479 consensus_10176#1 AATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTAT 197 consensus_10176#2 ------------------------------------------------------------ consensus_10176#0 AATACCAGTTGATCAATTCAACCAAATGATGGAATGTGCAAAGCAGTACCCAGTGTTTAT 539 consensus_10176#1 ACTTCCTATTCCTCGAAGTGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAACAC 257 consensus_10176#2 ------------------------------------------------------------ consensus_10176#0 ACTTCCTATTCCTCGAAGCGAAGGGTACGAGTTCATAATGCTACAATTTGCAGCTAACAC 599 consensus_10176#1 TATTCATTTCACGCCTTTGTTGAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTT 317 consensus_10176#2 ------------------------------------------------------------ consensus_10176#0 TATTCATTTCACGCCTTTGTTAAATTACCAGGTCCACAAAGAAAACGCCCCTGAATGTTT 659 consensus_10176#1 AAACATCACCATGTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGGAGAATA 377 consensus_10176#2 ------------------------------------------------------------ consensus_10176#0 AAACATCACCATGTTTACAGAATGTTCTGATAAAGGAATCATACTGATGCGGGGAGAATA 719 consensus_10176#1 TGATACCAAAGTAATCAATGCACAGGAAGCACAGT-GTTTAGCAAATCAAGTCCAA--CT 434 consensus_10176#2 -------------------GCACAGGAAGCACAGTTGTTTAGCAAATCAAGTCCAAGCTT 41 consensus_10176#0 TGATACCAAAGTAATCAATGCACAGGAAGCACAGT-GTTTAGCAAATCAAGTCCAA--CT 776 **************** ******************** * consensus_10176#1 TTATTATT-GTCAGAAGAATGTATCTAAATTGCATCTGCTTGAAACGTTTACTAGACATC 493 consensus_10176#2 TTATTATTTGTCAGAAGAATGTATCTAAATTGCATCTGCTTGAAACGTTTACTAGACATC 101 consensus_10176#0 TTATTATT-GTCAGAAGAATGTATCTAAATTGCATCTGCTTGAAACGTTTACTAGACATC 835 ******** *************************************************** consensus_10176#1 CGGATAAGTTCAAACACATGGACATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGT 553 consensus_10176#2 CGGATAAGTTCAAACACATGGACATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGT 161 consensus_10176#0 CGGATAAGTTCAAACACATGGACATCATCGAGGAGTTGAACAATTTGAAAATTTAATTGT 895 ************************************************************ consensus_10176#1 TTTTTCTTATGAAGGTACTTAATTGTTATCAGAACATAGCTTCCTGGGAGTCCTGTATTG 613 consensus_10176#2 TTTTTCTTATGAAGGTACTTAATTGTTATCAGAACATAGCTTCCTGGGAGTCCTGTATTG 221 consensus_10176#0 TTTTTCTTATGAAGGTACTTAATTGTTATCAGAACATAGCTTCCTGGGAGTCCTGTATTG 955 ************************************************************ consensus_10176#1 TTGTTGCAGCCAATATATCTTGCGATAAATATACCGGGGTGCCTGCAAAATTTTCGTTTG 673 consensus_10176#2 TTGTTGCAGCCAATATATCTTGCGATAAATATACCGGGGTGCCTGCAAAATTTTCGTTTA 281 consensus_10176#0 TTGTTGCAGCCAATATATCTTGCGATAAATATACCGGGGTGCCTTCAAAAAAAAAAAAAA 1015 ******************************************** ***** consensus_10176#1 ACTCAAGATAGTTAATCGTTTGAAAATGATTTGGAAAAGTATTGTTCATTATCGTTTCAT 733 consensus_10176#2 GA--AAAATAAATAC--------------------------------------------- 294 consensus_10176#0 AAAAAAAA---------------------------------------------------- 1023 ** * consensus_10176#1 TAGATGGAGTGCCAAAATCAAATCTTCGGTCGGTACTAATTCCATCGATGTTGAAATCTT 793 consensus_10176#2 ------------------------------------------------------------ consensus_10176#0 ------------------------------------------------------------ consensus_10176#1 CATCCTTAAGCAACCCATTTTTTTTTTCCGTCAAGAAATCGTCCCTGGCAATTAGATCTA 853 consensus_10176#2 ------------------------------------------------------------ consensus_10176#0 ------------------------------------------------------------ consensus_10176#1 CAAGAAAGGGGGATTCATC 872 consensus_10176#2 ------------------- consensus_10176#0 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||