These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1039#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CCGCCCACGCGTCCGATTTTTGTGGAGGGAGGATATTCTTGGAAGCCTTTTCTTTTATTTTAAAAATCGACAAGTGCTTTTCGTATGGTGCATTGGCCATTCAAAACGGTTTAACTCAGTTGATGAAGTTTATCTTTTTGTTTTTTATTGTTCTATGTTCATAAAGAGTGTTTGCTTAAGTTTCATGATACTAATGATCAAAGCGCGTATGCGAATGCTCCAACCGAAAGTAAAATGAAGCGGAGTAAGCGATATAAAACCATCTTATTGTTTTAAGTCAACAATTTGTTCCTTATCGTGTGAAAAAGATTGTGTAGCGTAATGTTTTGGCTGGTACACTATCGTAGTTTGCCAGTGATGGGAAGGTGTATTGCATTAACCAACATATTACGCTATGCTAGGGATGTTCTAGATTGTTTAGTTAAGTTTTTGCTTAGTTTGGTTTGTTTAATTACCCGTATTCTTTTAGCTCTGCATACTAATACTGCGTGTGACAGTGTGGTTTGATATTGAGTGGCAGTGATTTTTAGGAACGTTTGGATTAAGAGAATGTACCAAGTATGTGGTAGTGTCAGAGTGAGGCGAAACGATGAGGAAAAATCAATCAATCATCAGCTGGAATGGTACGGACGCAACATTACGAACTGAACGAACG] [+] EMBL BM592402 [CCGCCCACGCGTCCGATTTTTGTGGAGGGAGGATATTCTTGGAAGCCTTTTCTTTTATTTTAAAAATCGACAAGTGCTTTTCGTATGGTGCATTGGCCATTCAAAACGGTTTAACTCAGTTGATGAAGTTTATCTTTTTGTTTTTTATTGTTCTATGTTCATAAAGAGTGTTTGCTTAAGTTTCATGATACTAATGATCAAAGCGCGTATGCGAATGCTCCAACCGAAAGTAAAATGAAGCGGAGTAAGCGATATAAAACCATCTTATTGTTTTAAGTCAACAATTTGTTCCTTATCGTGTGAAAAAGATTGTGTAGCGTAATGTTTTGGCTGGTACACTATCGTAGTTTGCCAGTGATGGGAAGGTGTATTGCATTAACCAACATATTACGCTATGCTAGGGATGTTCTAGATTGTTTAGTTAAGTTTTTGCTTAGTTTGGTTTGTTTAATTACCCGTATTCTTTTAGCTCTGCATACTAATACTGCGTGTGACAGTGTGGTTTGATATTGAGTGGCAGTGATTTTTAGGAACGTTTGGATTAAGAGAATGTACCAAGTATGTGGTAGTGTCAGAGTGAGGCGAAACGATGAGGAAAAATCAATCAATCATCAGCTGGAATGGTACGGACGCAACATTACGAACTGAACGAACG] consensusID : consensus_1039#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence [CCGGAGCAGAATATCGCCGACAAACCGTTACCTCTACGCCCTGCTGGATAGAGCTGCATTTAAACGGTCCCCTGCAGTGGCTGGACCGAGTACTCACCCAGATGGGCTCACCACGTTTGCCATGTAGTTCTATGTCCTAAACACTGCTACCTTGTGTCCTATAACTAAAGCTCCGTGGATCTCGCTCCAGAGCACTCGAACGCAGTGTGCGCGGAGTGTAAGGACTACTACCCCGTTTGTCTACCTCCGCCGGATAATGTTTTTCGCTCCTGGTCCCAATGTTCTCTGTCAGAAGCAGGATGTTATAGATTAAGTTTTCCTAACGGAAATTTCATTCAACCCTCTACCATTGCAACCAGTACCCGCCTACAGACATTGTGTACATATTGCTTTTGATTACGTTCAGGTTCAGTGCTGTATTTTTGTGGAGGGAGGATATTCTTGGAAGCCTTTTCTTTTATTTTAAAATCGACAAGTGCTTTTCGTATGGTGCATTGACCATTCAAAACGGTTTAACTCAGTTGATGAAGTTTATCTTTTTGTTTTTTATTGTTCTATGTTCATAAAGAGTGTTTGCTTAAGTTTCATGATACTAATGATCAAAGCGCGTATGCGAATGCTCCCAACCGAA] [+] EMBL BM581582 [CCGGAGCAGAATATCGCCGACAAACCGTTACCTCTACGCCCTGCTGGATAGAGCTGCATTTAAACGGTCCCCTGCAGTGGCTGGACCGAGTACTCACCCAGATGGGCTCACCACGTTTGCCATGTAGTTCTATGTCCTAAACACTGCTACCTTGTGTCCTATAACTAAAGCTCCGTGGATCTCGCTCCAGAGCACTCGAACGCAGTGTGCGCGGAGTGTAAGGACTACTACCCCGTTTGTCTACCTCCGCCGGATAATGTTTTTCGCTCCTGGTCCCAATGTTCTCTGTCAGAAGCAGGATGTTATAGATTAAGTTTTCCTAACGGAAATTTCATTCAACCCTCTACCATTGCAACCAGTACCCGCCTACAGACATTGTGTACATATTGCTTTTGATTACGTTCAGGTTCAGTGCTGTATTTTTGTGGAGGGAGGATATTCTTGGAAGCCTTTTCTTTTATTTTAAAATCGACAAGTGCTTTTCGTATGGTGCATTGACCATTCAAAACGGTTTAACTCAGTTGATGAAGTTTATCTTTTTGTTTTTTATTGTTCTATGTTCATAAAGAGTGTTTGCTTAAGTTTCATGATACTAATGATCAAAGCGCGTATGCGAATGCTCCCAACCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1039#0 CCGCCCACGCGTCCGATTTTTGTGGAGGGAGGATATTCTTGG-AAGCCTTTTCTTTTATT 59 consensus_1039#1 ----------------------CCGGAGCAGAATATCGCCGACAAACCGTTACCTCTACG 38 * * ** **** * ** ** ** * * ** consensus_1039#0 TTAAAAATCGACAAGTGCTTTTCGTATGGTGCATTGGCCATTCAAAACGGTTTAACTCAG 119 consensus_1039#1 CCCTGCTGGATAGAGCTGCATTTAAACGGTCCCCTGCAGTGGCTGGACCGAGTA-CTCAC 97 ** ** * *** * ** * ** * ** **** consensus_1039#0 TTGATGAAGTTTATCTTTTTGTTTTTTATTGTTCTATGTTCATAAAGAGTGTTTGCTTAA 179 consensus_1039#1 CCAGATGGGCTCACCACGTT-TGCCATGTAGTTCTATGTCC-TAAACACTGCTACCTTGT 155 * * * * ** * * * ********* * **** * ** * *** consensus_1039#0 GTTTCATGATACTAATGATC---AAAGCGCGTATGCGAATGCTCCAACCGAAAGTAAAAT 236 consensus_1039#1 GTCCTATAA--CTAAAGCTCCGTGGATCTCGCTCCAGAGCACTCGAACGCAGTGTGCGCG 213 ** ** * **** * ** * * ** ** *** *** * ** consensus_1039#0 GAAGCGGAGTAAGCGATATAAAACCATCTTATTGTTTTAAGTCAACAATTTGTTCCTTAT 296 consensus_1039#1 GA----GTGTAAGGACTACTACCCCGTTTGTCTACCTCCGCCGGATAATGTTTTTCGCTC 269 ** * ***** ** * ** * * * * * *** * ** * consensus_1039#0 CGTGTGAAAAAGAT-TGTGT----AGCGTAATGTTTTGGCTGGTACACTATCGTAGTTTG 351 consensus_1039#1 CTGGTCCCAATGTTCTCTGTCAGAAGCAGGATGTTATAGAT--TAAGTTTTCCTAACGGA 327 * ** ** * * * *** *** ***** * * * ** * ** ** consensus_1039#0 CCAGTGATGGGAAGGTGTATTGCATTAACCAACATATTACGCTATGCTAGGGATGTTCTA 411 consensus_1039#1 AATTTCATTCAACCCTCTACCATTGCAACCAGTACCCGCCTACAGACATTGTGTACA-TA 386 * ** * * ** ***** * * * * * * ** consensus_1039#0 GATTGTTTAGTTAAGTTTTTGCTTAGTTTGGTTTGTTTA---ATTACCCGTATTCTTTTA 468 consensus_1039#1 TTGCTTTTGATTACGTTCAGGTTCAGTGCTGTATTTTTGTGGAGGGAGGATATTCTTGGA 446 *** *** *** * * *** ** * *** * ******* * consensus_1039#0 GCTCTGCATACTAATACTGCGTGTGACAGTGTGGTTTGATATTGAGTGGCAGTGATTTTT 528 consensus_1039#1 AGCCTTTTCTTTTATTTTAAAATCGACAA-GTGCTTT--TCGTATGGTGCATTGACCATT 503 ** * ** * **** *** *** * * * *** *** ** consensus_1039#0 AGGAACGTTTGGATTAAGAGAATGTACCAAGTATGTGGTAGTGTCAGAGTGAGGCGAAAC 588 consensus_1039#1 CAAAACGGTTTAACTCAGTTGATGAAGTT--TATCTTTTTGTTTTTTATTGTTCTATGTT 561 **** ** * * ** *** * *** * * ** * * ** consensus_1039#0 GATGAGGAAAAATCAATCAATCATCA--GCTGGAATGGTACGGACGCAACATTACGAACT 646 consensus_1039#1 CATAAAGAGTGTTTGCTTAAGTTTCATGATACTAATGATCAAAGCGCGTA--TGCGAATG 619 ** * ** * * ** *** **** * *** * **** consensus_1039#0 GAACGAACG--- 655 consensus_1039#1 CTCCCAACCGAA 631 * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||