These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence [CCGCCCACGCGTCCGCCTGAAGTGGTCAGTGTAGTGTGTTAGTTACGTGAAGATGAAGACGGCAGCAGTTGTGTTGGCAGTCGTGTCCCTCGTAGGATGTGCAGTGGCCGTGTCGCACCCTTACACGCAATGTGCCTCGAATGAGATGCTGGTGTCTTCGCCACCGTGCTGCGAACCAACGTGCGACTGTGACTGTGAGCATGTCACCTGTCAGCAGATGCTCGTGTACCAGCCGACCTGCGTCTGCATGCAGGGCTTCGTACGCCTGGAGGGTCGCTGTGTTCCGAAGACGTGCTGTCCGGCTCCCGAGCCAACGTGCCCCACTGAAGCTCCCGTGTATCATCAACCGTCGTGCGGCTGTGGTCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATCCTGCTCCCTGCGAAACTACGCCCAAACCCTGCCATCCGGTGTACGAACAGCCTTCGTGCGGCTGTGGCCAAACTCCCTGCAAGTGCGAACAGCCCATGTACGAACAGCAGCCTTCGTGCGGCTGTGGCCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATGCTCCTGCTCCTTGCGAAACCACTCCCAAACCCTGCCATCCGGTGTACGAACAGCCCTCGTGCGGGTGTGGCCAAACTCCCTGCAAGTGCGAACATCCCACGTACGAACAGCAGCATTTCGTGCGGGTGTGGCCAATCTCCCCTGCAGTGTGTCCAGGTGTTGTACAAGTCTTGCGAAACGAAACCCACCCCACTACGCCCTGTCCTCCGGGGTACGAACAACCGTCCGGT] [+] EMBL BM617794 [CCGCCCACGCGTCCGCCTGAAGTGGTCAGTGTAGTGTGTTAGTTACGTGAAGATGAAGACGGCAGCAGTTGTGTTGGCAGTCGTGTCCCTCGTAGGATGTGCAGTGGCCGTGTCGCACCCTTACACGCAATGTGCCTCGAATGAGATGCTGGTGTCTTCGCCACCGTGCTGCGAACCAACGTGCGACTGTGACTGTGAGCATGTCACCTGTCAGCAGATGCTCGTGTACCAGCCGACCTGCGTCTGCATGCAGGGCTTCGTACGCCTGGAGGGTCGCTGTGTTCCGAAGACGTGCTGTCCGGCTCCCGAGCCAACGTGCCCCACTGAAGCTCCCGTGTATCATCAACCGTCGTGCGGCTGTGGTCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATCCTGCTCCCTGCGAAACTACGCCCAAACCCTGCCATCCGGTGTACGAACAGCCTTCGTGCGGCTGTGGCCAAACTCCCTGCAAGTGCGAACAGCCCATGTACGAACAGCAGCCTTCGTGCGGCTGTGGCCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATGCTCCTGCTCCTTGCGAAACCACTCCCAAACCCTGCCATCCGGTGTACGAACAGCCCTCGTGCGGGTGTGGCCAAACTCCCTGCAAGTGCGAACATCCCACGTACGAACAGCAGCATTTCGTGCGGGTGTGGCCAATCTCCCCTGCAGTGTGTCCAGGTGTTGTACAAGTCTTGCGAAACGAAACCCACCCCACTACGCCCTGTCCTCCGGGGTACGAACAACCGTCCGGT] consensusID : consensus_1049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CCGACCAGTTCCCGGCAGCAAGGCGTGTTGTGTTCCCTGAAGTGGTCAGTGTAGTGTGTTACCTACTCCGTGAAGATGAAGACGGCAGCAGTTGTGTTGGCAGTCGTGTCCCTCGTAGGATGTGCAGTGGCCGTGTCGCACCCTTACACGCAATGTGCCTCGAATGAGATGCTGGTGTCTTCGCCACCGTGCTGCGAACCAACGTGCGACTGTGACTGTGAGCATGTCACCTGTCAGCAGATGCTCGTGTACCAGCCGACCTGCGTCTGCATGCAGGGTTTCGTACGCCTGGAGGGTCGCTGTGTTCCGAAGACGTGCTGTCCGGCTCCCGAGCCAACGTGCCCCACTGAAGCTCCCGTGTATCATCAACCGTCGTGCGGCTGTGGTCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATCCTGCTCCCTGCGAAACTACCCCCAAACCCTGCCATCCGGTGTACGAACAGCCTTCGTGCGGCTGTGGCCAAACTCCCTGCAAGTGTGAACAGCCCATGTACGAACAGCAGCCTTCGTGCGGCTGTGGCCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATGCTCCTGCTCCTTGCGAAACCACTCCCAAACCCTGCCATCCGGTGTACGAACAGCCCTCGTGCGGGTGTGGTCAAACTCCCCTGCAAGTGTGAGCA] [+] EMBL BM614823 [CCGACCAGTTCCCGGCAGCAAGGCGTGTTGTGTTCCCTGAAGTGGTCAGTGTAGTGTGTTACCTACTCCGTGAAGATGAAGACGGCAGCAGTTGTGTTGGCAGTCGTGTCCCTCGTAGGATGTGCAGTGGCCGTGTCGCACCCTTACACGCAATGTGCCTCGAATGAGATGCTGGTGTCTTCGCCACCGTGCTGCGAACCAACGTGCGACTGTGACTGTGAGCATGTCACCTGTCAGCAGATGCTCGTGTACCAGCCGACCTGCGTCTGCATGCAGGGTTTCGTACGCCTGGAGGGTCGCTGTGTTCCGAAGACGTGCTGTCCGGCTCCCGAGCCAACGTGCCCCACTGAAGCTCCCGTGTATCATCAACCGTCGTGCGGCTGTGGTCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATCCTGCTCCCTGCGAAACTACCCCCAAACCCTGCCATCCGGTGTACGAACAGCCTTCGTGCGGCTGTGGCCAAACTCCCTGCAAGTGTGAACAGCCCATGTACGAACAGCAGCCTTCGTGCGGCTGTGGCCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATGCTCCTGCTCCTTGCGAAACCACTCCCAAACCCTGCCATCCGGTGTACGAACAGCCCTCGTGCGGGTGTGGTCAAACTCCCCTGCAAGTGTGAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1049#0 --------------CCGCCCACGCGT------CCGCCTGAAGTGGTCAGTGTAGTGTGTT 40 consensus_1049#1 CCGACCAGTTCCCGGCAGCAAGGCGTGTTGTGTTCCCTGAAGTGGTCAGTGTAGTGTGTT 60 * * * **** ************************* consensus_1049#0 AGTTAC---GTGAAGATGAAGACGGCAGCAGTTGTGTTGGCAGTCGTGTCCCTCGTAGGA 97 consensus_1049#1 ACCTACTCCGTGAAGATGAAGACGGCAGCAGTTGTGTTGGCAGTCGTGTCCCTCGTAGGA 120 * *** *************************************************** consensus_1049#0 TGTGCAGTGGCCGTGTCGCACCCTTACACGCAATGTGCCTCGAATGAGATGCTGGTGTCT 157 consensus_1049#1 TGTGCAGTGGCCGTGTCGCACCCTTACACGCAATGTGCCTCGAATGAGATGCTGGTGTCT 180 ************************************************************ consensus_1049#0 TCGCCACCGTGCTGCGAACCAACGTGCGACTGTGACTGTGAGCATGTCACCTGTCAGCAG 217 consensus_1049#1 TCGCCACCGTGCTGCGAACCAACGTGCGACTGTGACTGTGAGCATGTCACCTGTCAGCAG 240 ************************************************************ consensus_1049#0 ATGCTCGTGTACCAGCCGACCTGCGTCTGCATGCAGGGCTTCGTACGCCTGGAGGGTCGC 277 consensus_1049#1 ATGCTCGTGTACCAGCCGACCTGCGTCTGCATGCAGGGTTTCGTACGCCTGGAGGGTCGC 300 ************************************** ********************* consensus_1049#0 TGTGTTCCGAAGACGTGCTGTCCGGCTCCCGAGCCAACGTGCCCCACTGAAGCTCCCGTG 337 consensus_1049#1 TGTGTTCCGAAGACGTGCTGTCCGGCTCCCGAGCCAACGTGCCCCACTGAAGCTCCCGTG 360 ************************************************************ consensus_1049#0 TATCATCAACCGTCGTGCGGCTGTGGTCAAACTCCTTGCCAGTGCGAGCAACCGAAGTAC 397 consensus_1049#1 TATCATCAACCGTCGTGCGGCTGTGGTCAAACTCCTTGCCAGTGCGAGCAACCGAAGTAC 420 ************************************************************ consensus_1049#0 CATCCTGCTCCCTGCGAAACTACGCCCAAACCCTGCCATCCGGTGTACGAACAGCCTTCG 457 consensus_1049#1 CATCCTGCTCCCTGCGAAACTACCCCCAAACCCTGCCATCCGGTGTACGAACAGCCTTCG 480 *********************** ************************************ consensus_1049#0 TGCGGCTGTGGCCAAACTCCCTGCAAGTGCGAACAGCCCATGTACGAACAGCAGCCTTCG 517 consensus_1049#1 TGCGGCTGTGGCCAAACTCCCTGCAAGTGTGAACAGCCCATGTACGAACAGCAGCCTTCG 540 ***************************** ****************************** consensus_1049#0 TGCGGCTGTGGCCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATGCTCCTGCTCCT 577 consensus_1049#1 TGCGGCTGTGGCCAAACTCCTTGCCAGTGCGAGCAACCGAAGTACCATGCTCCTGCTCCT 600 ************************************************************ consensus_1049#0 TGCGAAACCACTCCCAAACCCTGCCATCCGGTGTACGAACAGCCCTCGTGCGGGTGTGGC 637 consensus_1049#1 TGCGAAACCACTCCCAAACCCTGCCATCCGGTGTACGAACAGCCCTCGTGCGGGTGTGGT 660 *********************************************************** consensus_1049#0 CAAACTCCC-TGCAAGTGCGAACATCCCACGTACGAACAGCAGCATTTCGTGCGGGTGTG 696 consensus_1049#1 CAAACTCCCCTGCAAGTGTGAGCA------------------------------------ 684 ********* ******** ** ** consensus_1049#0 GCCAATCTCCCCTGCAGTGTGTCCAGGTGTTGTACAAGTCTTGCGAAACGAAACCCACCC 756 consensus_1049#1 ------------------------------------------------------------ consensus_1049#0 CACTACGCCCTGTCCTCCGGGGTACGAACAACCGTCCGGT 796 consensus_1049#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||