These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [CCGAGGTTAAGATACGGCTGTACACGGCAGCTTGGTGCGCAAAGAAAACCCGCTCACCCAGTGCGATCTACTCGACCGGACACCGGAAGCAGCGGAGATGATCAAGAGCATGAAGCGTGAAATCGTGAATGCGGACGGCAGCCGGGACATTTGGTATCCGAATGGCAATTTGAAGAAAATATCAGCGGACGGATTGATCATACGGATGCTGTACTTCAACAAGGACATCAAGGAAACGAATATGACCGAGGGTACGACCAAGTACTACTACTTCGAGACCAATACCTGGCACACGACCTATCTAGATGGGCTGGAAATACTAGAGTTTCCTGATGGCCAAACGGAGCACCGTTTTAAAGACGGATCGACGCGAGGTTCACTTTCCAAACGGATCTATACGCACAACGAACCCGAACAGTGCAGACATAGCCGAAGAGCTGGAAGTATCCAGCACGGTACGACGGTAATCATCCGCAAAAACGATGACAAAGCAGATAAATCTACCGAACGGGCAGGTTGAGATCCACACCAAGGCCCACA] [+] EMBL AL933690 [CCGAGGTTAAGATACGGCTGTACACGGCAGCTTGGTGCGCAAAGAAAACCCGCTCACCCAGTGCGATCTACTCGACCGGACACCGGAAGCAGCGGAGATGATCAAGAGCATGAAGCGTGAAATCGTGAATGCGGACGGCAGCCGGGACATTTGGTATCCGAATGGCAATTTGAAGAAAATATCAGCGGACGGATTGATCATACGGATGCTGTACTTCAACAAGGACATCAAGGAAACGAATATGACCGAGGGTACGACCAAGTACTACTACTTCGAGACCAATACCTGGCACACGACCTATCTAGATGGGCTGGAAATACTAGAGTTTCCTGATGGCCAAACGGAGCACCGTTTTAAAGACGGATCGACGCGAGGTTCACTTTCCAAACGGATCTATACGCACAACGAACCCGAACAGTGCAGACATAGCCGAAGAGCTGGAAGTATCCAGCACGGTACGACGGTAATCATCCGCAAAAACGATGACAAAGCAGATAAATCTACCGAACGGGCAGGTTGAGATCCACACCAAGGCCCACA] consensusID : consensus_1051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [CCGAGTGAATGCAGCCGCTGCGCAGGATAAATCTAAAAGAGGCTTACAACCGAACCGCCCTAAAACGCAACAAGTTGGTGAGTCGAAGGTAAGCAAGGCGTCGGTGCAGGTTGCGAGGGCAAAGGTTACAAGCCATCCGCCGATGCGGGGGAAAGTTACAATGCGTACTAAAGCTGTCCGCATTTTGGAGCAGCAGGAAGGTTTGAGTTCCGAAACGGACGAAAATAATGGAAATAGGTTTTATGCACAACATGATTCCTCTGATGATGATTCCGATCGTCCTGTGAATGGAAATAAGAGTACCGAAGACGAGGGCGATGATGACGATGACGAGGACGATTACGAGGCGATTGGTGAAAATTCCAGCTCGGCGCAGGATAGTTCTGCAGTGCAGTCATCGTACTTCCCTAAGAATCCTGCCGTACGCAAAACGCTCTTTAACGCGGTAAACCTAAACGAAGATGCGGCTGTACCACGGCAAGGCTTGGCGCGCAAAGAAAACCCGCTCACCCAGTGTGATCTACTC] [+] EMBL BM585753 [CCGAGTGAATGCAGCCGCTGCGCAGGATAAATCTAAAAGAGGCTTACAACCGAACCGCCCTAAAACGCAACAAGTTGGTGAGTCGAAGGTAAGCAAGGCGTCGGTGCAGGTTGCGAGGGCAAAGGTTACAAGCCATCCGCCGATGCGGGGGAAAGTTACAATGCGTACTAAAGCTGTCCGCATTTTGGAGCAGCAGGAAGGTTTGAGTTCCGAAACGGACGAAAATAATGGAAATAGGTTTTATGCACAACATGATTCCTCTGATGATGATTCCGATCGTCCTGTGAATGGAAATAAGAGTACCGAAGACGAGGGCGATGATGACGATGACGAGGACGATTACGAGGCGATTGGTGAAAATTCCAGCTCGGCGCAGGATAGTTCTGCAGTGCAGTCATCGTACTTCCCTAAGAATCCTGCCGTACGCAAAACGCTCTTTAACGCGGTAAACCTAAACGAAGATGCGGCTGTACCACGGCAAGGCTTGGCGCGCAAAGAAAACCCGCTCACCCAGTGTGATCTACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1051#0 CCGAGGTTAAGATACGGCTGTACACGGCAGCTTGGTGCGCAAAGAAAACCCGCTCACCCA 60 consensus_1051#1 CCGAGTGAATGCAGCCGCTGCGCAGGATAAATC------TAAAAGAGGCTTA--CAACCG 52 ***** * * * **** ** * * * *** * * ** ** consensus_1051#0 GTGCGATCTACTCGACCGGACACCGGAAGCAGCGGAGATGATCAAGAGCATGAAGCGTGA 120 consensus_1051#1 AACCGCCCTAAAACGCAACAAGTTGGT-GAGTCGAAGGTAAGCAAGGCGTCGGTGC---A 108 ** *** * * ** * ** ** * * **** * ** * consensus_1051#0 AATCGTGAATGCGGACGGCAGCCGGGACATTTGGTATCCGAATGGCAATTTGAAGAAAAT 180 consensus_1051#1 GGTTGCGAGGGCAAAGGTTA--CAAGCCATCCGCCGATGCGGGGGAAAGTTACAATGCGT 166 * * ** ** * * * * * *** * ** ** ** * * consensus_1051#0 ATCA--GCGGACGGATTGATCATACGGATGCTGTACTTCAACAAGGACATCAAGGAAACG 238 consensus_1051#1 ACTAAAGCTGTCCGCATTTTGGAGCAGCAGGAAGGTTTGAGTTCCGAAACGGACGAAAAT 226 * * ** * * * * * * * * ** * ** * * **** consensus_1051#0 AATATGACCGAGGGTACGACCAAGTACTACTACTTCGAGACCAATACCTGGCACACGACC 298 consensus_1051#1 AATGGAAATAGGTTTTATGCACAACATGATTCCTCTGATGATGATTCCGATCGTCCTGTG 286 *** * * * * * * * * ** ** ** ** * * consensus_1051#0 TATCTAGATGGGCTGGAAATACTAGAGTTTCCTGATGGCCAAACGGAGCACCGTTTTAAA 358 consensus_1051#1 AATGGAAATAAGAGTACCGAAGACGAGGGCGATGATGACGATGACGAGGACGATTACGAG 346 ** * ** * * *** ***** * * *** ** ** * consensus_1051#0 GACGGATCGACGCGAGGTTCACTTTCCAAACGGATCTATACGCACAACGAACCCGAACAG 418 consensus_1051#1 GC--GATTGGTGAAAATTCCAGCTCGGCGCAGGATAGTTCTGCAGTGCAGTC----ATCG 400 * *** * * * * ** * **** * *** * * * * consensus_1051#0 TGCAGACATAGCCGAAGAGCTGGAAGTATCCAGCACGGTACGACGGTAATCATCCGCAAA 478 consensus_1051#1 TACTTCCCTAAGAATCCTGCCGTACGCAAAACGCTCTTTAACGCGGTAAACCTAAACGAA 460 * * * ** ** * * * * ** * ** ****** * * * ** consensus_1051#0 AA--CGATGACAAAGCAGATAAATCTACCGAACGGGCAGGTTGAGATC-CACACCAAGGC 535 consensus_1051#1 GATGCGGCTGTACCACGGCAAGGCTTGGCGCGCAAAGAAAACCCGCTCACCCAGTGTGAT 520 * ** * * * * * ** * * * ** * ** * consensus_1051#0 CCACA- 540 consensus_1051#1 CTACTC 526 * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||