These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1057#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGGGTTTTTGTGCGCGAGGCTGGTAGCAAAGCCAGAAAAGCAAGAAGAAAAAAAGCGGTTGCGGTTCTGCGTATTGCATTAACAGTGCGTGTACAGGCCAAACGATAATACCACGCCGAAGGGAGCCGCCAGCAGCAGGCAGCGCGGATTAAGTAATTACTGAAGAACAAATGGATGTAGGACGACTACCAATTCGAACGCGTCTTCTTAATTTCATGTTGTGCCAATCACTGGAACGGTGAAGCAAACTTGTGCAAAACAGAAACAGGTATCGTTCGCTTTGAATCCTGCACGATCGCTTCCCATTTTTGGCAGCCGAGTAGATCGAACCGCGCATCGAGAGTAGCGCATCCGTCGGGGCGTATTCAGCTGACAGCTTGACGGTCGATCGCCACAAACAGGATGCTTTAGAACAGCCTGGCCACGAACATTGGGAAGCAGAAATACGATAAACCAAACCAAAAACAACAAAAAACGAGGAAACCAACAAAAACGATATCAACAACACCTTACTGAACTCGTGCGCAACGAACGATACGGTCGGCAGCAAAGTGCACCGCGGGCTTGATGCTGCTGCTGCTGCTGGACTGCAGCTAGTTTTGCCCCTCCACCATCAC] [+] EMBL BM575082 [CCGGGTTTTTGTGCGCGAGGCTGGTAGCAAAGCCAGAAAAGCAAGAAGAAAAAAAGCGGTTGCGGTTCTGCGTATTGCATTAACAGTGCGTGTACAGGCCAAACGATAATACCACGCCGAAGGGAGCCGCCAGCAGCAGGCAGCGCGGATTAAGTAATTACTGAAGAACAAATGGATGTAGGACGACTACCAATTCGAACGCGTCTTCTTAATTTCATGTTGTGCCAATCACTGGAACGGTGAAGCAAACTTGTGCAAAACAGAAACAGGTATCGTTCGCTTTGAATCCTGCACGATCGCTTCCCATTTTTGGCAGCCGAGTAGATCGAACCGCGCATCGAGAGTAGCGCATCCGTCGGGGCGTATTCAGCTGACAGCTTGACGGTCGATCGCCACAAACAGGATGCTTTAGAACAGCCTGGCCACGAACATTGGGAAGCAGAAATACGATAAACCAAACCAAAAACAACAAAAAACGAGGAAACCAACAAAAACGATATCAACAACACCTTACTGAACTCGTGCGCAACGAACGATACGGTCGGCAGCAAAGTGCACCGCGGGCTTGATGCTGCTGCTGCTGCTGGACTGCAGCTAGTTTTGCCCCTCCACCATCAC] consensusID : consensus_1057#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 144 fasta sequence [CGCGGGCTTGATGCTGCTGCTGGACTGCAGCTAGTTTTGCCCCCTCCACCATCACCAGCATCGCTTATTCTTTTCATCTTGTGCACGATCGCGCTCCACCGCCCTTGCACCAGACACCATTCGCTCGATTCGGCTCGGCTGCTG] [+] EMBL AGA283141 [CGCGGGCTTGATGCTGCTGCTGGACTGCAGCTAGTTTTGCCCCCTCCACCATCACCAGCATCGCTTATTCTTTTCATCTTGTGCACGATCGCGCTCCACCGCCCTTGCACCAGACACCATTCGCTCGATTCGGCTCGGCTGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1057#0 CCGGGTTTTTGTGCGCGAGGCTGGTAGCAAAGCCAGAAAAGCAAGAAGAAAAAAAGCGGT 60 consensus_1057#1 ------------------------------------------------------------ consensus_1057#0 TGCGGTTCTGCGTATTGCATTAACAGTGCGTGTACAGGCCAAACGATAATACCACGCCGA 120 consensus_1057#1 ------------------------------------------------------------ consensus_1057#0 AGGGAGCCGCCAGCAGCAGGCAGCGCGGATTAAGTAATTACTGAAGAACAAATGGATGTA 180 consensus_1057#1 ---------------------CGCGGGCTTGATGCTGCTGCTGGACTGCAGCTAGTTTTG 39 *** * * * * * *** * ** * * * * consensus_1057#0 GGACGACTACCAATTCGAACGCGTCTTCTTAATTTCATGTTGTGCCAATCACTGGAACGG 240 consensus_1057#1 CCCCCTCCACCATCACCAGCATCGCTTATTCTTTTCATCTTGTGC-----ACGATCGCGC 94 * * **** * * * *** ** ****** ****** ** ** consensus_1057#0 TGAAGCAAACTTGTGCAAAACAGAAACAGGTATCGTTCGCTTTGAATCCTGCACGATCGC 300 consensus_1057#1 TCCACCGCCCTTGCAC----------CAGACACCATTCGCTC--GATTCGGCTCGGCTGC 142 * * * **** * *** * * ****** ** * ** ** ** consensus_1057#0 TTCCCATTTTTGGCAGCCGAGTAGATCGAACCGCGCATCGAGAGTAGCGCATCCGTCGGG 360 consensus_1057#1 TG---------------------------------------------------------- 144 * consensus_1057#0 GCGTATTCAGCTGACAGCTTGACGGTCGATCGCCACAAACAGGATGCTTTAGAACAGCCT 420 consensus_1057#1 ------------------------------------------------------------ consensus_1057#0 GGCCACGAACATTGGGAAGCAGAAATACGATAAACCAAACCAAAAACAACAAAAAACGAG 480 consensus_1057#1 ------------------------------------------------------------ consensus_1057#0 GAAACCAACAAAAACGATATCAACAACACCTTACTGAACTCGTGCGCAACGAACGATACG 540 consensus_1057#1 ------------------------------------------------------------ consensus_1057#0 GTCGGCAGCAAAGTGCACCGCGGGCTTGATGCTGCTGCTGCTGCTGGACTGCAGCTAGTT 600 consensus_1057#1 ------------------------------------------------------------ consensus_1057#0 TTGCCCCTCCACCATCAC 618 consensus_1057#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||