These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence [CAGAATCGCCACGAGGTGCTCCTTGAAGTGAGAAACGTGACAGAAACTGAGCAGTCGCTCAGAAGACAGAAGCACAAGAGGCCGTGCAGGAATAGGGCCAGCAAAGTACTGAAGGGTTCGGTGGACAGACTGGTTGGTTCGGACGTTCGGTACAACTGGCAGACAGAATAGAGAAGAGAGAAGAACAAGAAACACGCACACTTGAAAACTTTCCGGGGATTCAAAGCGTCTTTCTCTTTAGGGCACTCAAATCAAAACTCACACTTCACTTCTTTCCTCGGGGCAAAACGGGAAACGGAAAGAAGCAACAAGAGCTGGTTTCCGATTGTTAAGCGTTTTACCACGAATTAGGGGTAGACATATTACTGGAGTTATAACTAGTAGTTTCCCGGGGCAAACCAACTATGGCAAGGCCAAACAAACAGACAACCCTTTGTTGCCCGGGGCTATATGGGCTAAACGCTGTCGATCAAGCCGTGTGGCAACAAACTCACCAAACACAAACACTACAAACAAAGCATAAATACAAACAAAACAACAGAGACACTCTGGAGGGGTCCGTCTTAACTGTATACGCGAATGTGTTTCCCATTTGTGTTGGCGCGCTGTAACGCTTTCCCGCATCCTTTCGCAATCCCCCAGNTAGAAGTAGGTGTAACTCCCAGATGTGACAACATGGTGTGACGGGTTCGTACGGATCGAAAAAAGATCATGCCGGCGGACACTTGAACNTGTATAAGTG] [+] EMBL BX468785 [CAGAATCGCCACGAGGTGCTCCTTGAAGTGAGAAACGTGACAGAAACTGAGCAGTCGCTCAGAAGACAGAAGCACAAGAGGCCGTGCAGGAATAGGGCCAGCAAAGTACTGAAGGGTTCGGTGGACAGACTGGTTGGTTCGGACGTTCGGTACAACTGGCAGACAGAATAGAGAAGAGAGAAGAACAAGAAACACGCACACTTGAAAACTTTCCGGGGATTCAAAGCGTCTTTCTCTTTAGGGCACTCAAATCAAAACTCACACTTCACTTCTTTCCTCGGGGCAAAACGGGAAACGGAAAGAAGCAACAAGAGCTGGTTTCCGATTGTTAAGCGTTTTACCACGAATTAGGGGTAGACATATTACTGGAGTTATAACTAGTAGTTTCCCGGGGCAAACCAACTATGGCAAGGCCAAACAAACAGACAACCCTTTGTTGCCCGGGGCTATATGGGCTAAACGCTGTCGATCAAGCCGTGTGGCAACAAACTCACCAAACACAAACACTACAAACAAAGCATAAATACAAACAAAACAACAGAGACACTCTGGAGGGGTCCGTCTTAACTGTATACGCGAATGTGTTTCCCATTTGTGTTGGCGCGCTGTAACGCTTTCCCGCATCCTTTCGCAATCCCCCAGNTAGAAGTAGGTGTAACTCCCAGATGTGACAACATGGTGTGACGGGTTCGTACGGATCGAAAAAAGATCATGCCGGCGGACACTTGAACNTGTATAAGTG] consensusID : consensus_109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CCGCCCACGCGTCCGGAAGAAAGAAGAACAAGAAACACGCACACTTGAAAACTTTCCGGGATCAAATCGTCTTCTCTTAGGCACTCAAATCAAACTCACACTCACTCTTTCTCGGGCAAACGGAACGAAGAGCACAAGAGCTGGTTTCGATGTAGCGTTTACAGGTAGGGTAGAATATACTGGAGTATACTAGTAGTTCCGGCAACAACTACGGTAGCAACAACAGACAACTTGTGCCAGGCTATATGGGCTGACGCTGTCGATCAGCCGTGTGGCAACAAACTCACCAAACACAACACTACAAACAAACATAAAAACAAACAAACAACAGAGACACTCTGGAGGGGTCCGTCTTAACTGTATACGCGAATGTGTTTCCCATTTGTGTTGGCGCGCTGTAACGCTTTCCCGCATCCTTTCGCAATCCCTCCGCTAGAATAGGTGTAACTCCCAGATGTGACAACATGGTGTGACGGGTTCGTACGGATCGAAAAAAAGATCATGCCGGCGACACTGAAACTGTTATAAGTGTATTTTGTGTGAGTGTTTGTTCATGAATGTCAACTATCCATAATGTCTATGTTGTGAACCAGAAGCGCATTC] [+] EMBL BM643516 [CCGCCCACGCGTCCGGAAGAAAGAAGAACAAGAAACACGCACACTTGAAAACTTTCCGGGATCAAATCGTCTTCTCTTAGGCACTCAAATCAAACTCACACTCACTCTTTCTCGGGCAAACGGAACGAAGAGCACAAGAGCTGGTTTCGATGTAGCGTTTACAGGTAGGGTAGAATATACTGGAGTATACTAGTAGTTCCGGCAACAACTACGGTAGCAACAACAGACAACTTGTGCCAGGCTATATGGGCTGACGCTGTCGATCAGCCGTGTGGCAACAAACTCACCAAACACAACACTACAAACAAACATAAAAACAAACAAACAACAGAGACACTCTGGAGGGGTCCGTCTTAACTGTATACGCGAATGTGTTTCCCATTTGTGTTGGCGCGCTGTAACGCTTTCCCGCATCCTTTCGCAATCCCTCCGCTAGAATAGGTGTAACTCCCAGATGTGACAACATGGTGTGACGGGTTCGTACGGATCGAAAAAAAGATCATGCCGGCGACACTGAAACTGTTATAAGTGTATTTTGTGTGAGTGTTTGTTCATGAATGTCAACTATCCATAATGTCTATGTTGTGAACCAGAAGCGCATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_109#0 CAGAATCGCCACGAGGTGCTCCTTGAAGTGAGAAACGTGACAGAAACTGAGCAGTCGCTC 60 consensus_109#1 ------------------------------------------------------------ consensus_109#0 AGAAGACAGAAGCACAAGAGGCCGTGCAGGAATAGGGCCAGCAAAGTACTGAAGGGTTCG 120 consensus_109#1 ------------------------------------------------------------ consensus_109#0 GTGGACAGACTGGTTGGTTCGGACGTTCGGTACAACTGGCAGACAGAATAGAGAAGAGAG 180 consensus_109#1 ------------------------------------CCGCCCAC-GCGTCCGGAAGAAAG 23 ** ** * * ***** ** consensus_109#0 AAGAACAAGAAACACGCACACTTGAAAACTTTCCGGGGATTCAAAGCGTCTTTCTCTTTA 240 consensus_109#1 AAGAACAAGAAACACGCACACTTGAAAACTTTCCGGGA--TCAAATCGTCTT---CTCTT 78 ************************************* ***** ****** ** * consensus_109#0 GGGCACTCAAATCAAAACTCACACTTCACTTCTTTCCTCGGGGCAAAACGGGAAACGGAA 300 consensus_109#1 AGGCACTCAAATCAAA-CTCACACT-CACTCTTTCTC---GGGCAAA---CGGAACGAAG 130 *************** ******** **** ** * ******* * **** * consensus_109#0 AGAAGCAACAAGAGCTGGTTTCCGATTGTTAAGCGTTTTACCACGAATTAGGGGTAGACA 360 consensus_109#1 AGC----ACAAGAGCTGGTTTC--GATGT--AGCGTTT----ACAGGT--AGGGTAGA-A 175 ** *************** *** ******* ** * ******* * consensus_109#0 TATTACTGGAGTTATAACTAGTAGTTTCCCGGGGCAAACCAACTATGGCAAGGCCAAACA 420 consensus_109#1 TAT-ACTGGAGT-ATA-CTAGTAGTTCC----GGCAA--CAACTACGGTAGCAACAA--- 223 *** ******** *** ********* * ***** ****** ** * *** consensus_109#0 AACAGACAACCCTTTGTTGCCCGGGGCTATATGGGCTAAACGCTGTCGATCAAGCCGTGT 480 consensus_109#1 --CAGACAAC------TTGTGCCAGGCTATATGGGCTGA-CGCTGTCGATCA-GCCGTGT 273 ******** *** * ************* * ************ ******* consensus_109#0 GGCAACAAACTCACCAAACACAAACACTACAAACAAAGCATAAATACAAACAAAACAACA 540 consensus_109#1 GGCAACAAACTCACCAAACACAA-CACTACAAACAAA-CATAAAAACAAACAAA-CAACA 330 *********************** ************* ****** ********* ***** consensus_109#0 GAGACACTCTGGAGGGGTCCGTCTTAACTGTATACGCGAATGTGTTTCCCATTTGTGTTG 600 consensus_109#1 GAGACACTCTGGAGGGGTCCGTCTTAACTGTATACGCGAATGTGTTTCCCATTTGTGTTG 390 ************************************************************ consensus_109#0 GCGCGCTGTAACGCTTTCCCGCATCCTTTCGCAATCCCCCAGNTAGAAGTAGGTGTAACT 660 consensus_109#1 GCGCGCTGTAACGCTTTCCCGCATCCTTTCGCAATCCCTCCGCTAGAA-TAGGTGTAACT 449 ************************************** * * ***** *********** consensus_109#0 CCCAGATGTGACAACATGGTGTGACGGGTTCGTACGGATCGAAAAAA-GATCATGCCGGC 719 consensus_109#1 CCCAGATGTGACAACATGGTGTGACGGGTTCGTACGGATCGAAAAAAAGATCATGCCGGC 509 *********************************************** ************ consensus_109#0 GGACACTTGAACNTGTATAAGTG------------------------------------- 742 consensus_109#1 G-ACACTGAAACTGTTATAAGTGTATTTTGTGTGAGTGTTTGTTCATGAATGTCAACTAT 568 * ***** *** ******** consensus_109#0 ----------------------------------- consensus_109#1 CCATAATGTCTATGTTGTGAACCAGAAGCGCATTC 603 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||