These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_113#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [CCGCCCACGCGTCCGCGATGCTGCCGTCGATTTCGCCCTTCTGCCTGAAGGTGGAGACCTGGCTGCGCCTCGCCGGGCTGAAGTATGAGAACATCGACCATAAGCTGAAGCTGCGCTCGAAGAAGGGACAGCTGCCGTTCGTCGAGGTCAATGGGGAGGAGATTGCCGACTCGACCATCATCATGCAGGAGCTGGCGACGCGCTACGACAAGGACCTGGACGCCGCCCTGACCCAGGAGCAGCGCAACATTGCCCACGCGATGATTTCGATGCTGGAGAACCATCTCGTCTGGGTGGTGCTGTCCTGGCGCAGCAAGAACACGGAACAGATGCTCAAGGGCTACAAGATCAACCTGCAGCACGCGCTCGGCAGCCGTCTGCCGAATGCGCTGCTGAACTTCTTCTTCAAATTCCAGTTCAGCCGCAAGGGTGCTAAAAAGGTGAAAGCTCAGGGCCTGGGCGTCCACAAGCCGGAGGAAATCGAGGAGTTCGGTCGCAAGGATCTGAAGGTGCTGTCCGAGCTGCTGGCCGATAAGCCATTCTTCTTCGGTGATGAACCCACCACGCTCGACTGTGTTGCATTCTCCGTGTTGGCCCAAATTCACTTCATTCTGGACGAGGTTAAGTACGGTCTGAAGGAGTTCATGCAGGAGAACTGCCCGAAC] [+] EMBL BM591208 [CCGCCCACGCGTCCGCGATGCTGCCGTCGATTTCGCCCTTCTGCCTGAAGGTGGAGACCTGGCTGCGCCTCGCCGGGCTGAAGTATGAGAACATCGACCATAAGCTGAAGCTGCGCTCGAAGAAGGGACAGCTGCCGTTCGTCGAGGTCAATGGGGAGGAGATTGCCGACTCGACCATCATCATGCAGGAGCTGGCGACGCGCTACGACAAGGACCTGGACGCCGCCCTGACCCAGGAGCAGCGCAACATTGCCCACGCGATGATTTCGATGCTGGAGAACCATCTCGTCTGGGTGGTGCTGTCCTGGCGCAGCAAGAACACGGAACAGATGCTCAAGGGCTACAAGATCAACCTGCAGCACGCGCTCGGCAGCCGTCTGCCGAATGCGCTGCTGAACTTCTTCTTCAAATTCCAGTTCAGCCGCAAGGGTGCTAAAAAGGTGAAAGCTCAGGGCCTGGGCGTCCACAAGCCGGAGGAAATCGAGGAGTTCGGTCGCAAGGATCTGAAGGTGCTGTCCGAGCTGCTGGCCGATAAGCCATTCTTCTTCGGTGATGAACCCACCACGCTCGACTGTGTTGCATTCTCCGTGTTGGCCCAAATTCACTTCATTCTGGACGAGGTTAAGTACGGTCTGAAGGAGTTCATGCAGGAGAACTGCCCGAAC] consensusID : consensus_113#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTGAGCGAGCAGGCTCAGGTCTACTGCACGATCGCACTGAACGGTGGCGTCTTCTGGGTGAAGCACACGTCCGACTTCCTGAAGGTGAACTAAGCACTGGACGGGGACGTCAACCAACCGGTGTGTATGTCTGCGGTCCCGGTGACCGGCCACCCGGGGATGTACCTTTTTACGAGTGGTTCGGAGCAGTATTATGGAGCGGAGAGCGAGCAAACCTACTACTAGAGAGCTGACTGTTTTTTGTTCACCATCGGGAAGACTGTGTCTTTCCGATTTTTACCCAACCGGACAATTCATTCTCATTAGCTTACGAAGATTTTCCACACCCCAAATCTTCCCGTTTTACCTGAAATGACAATAAAAACACAACATTATTGAC] [+] EMBL BM614463 [CCGCGGACGCGTGGGCGGACGCGTGGGTGAGCGAGCAGGCTCAGGTCTACTGCACGATCGCACTGAACGGTGGCGTCTTCTGGGTGAAGCACACGTCCGACTTCCTGAAGGTGAACTAAGCACTGGACGGGGACGTCAACCAACCGGTGTGTATGTCTGCGGTCCCGGTGACCGGCCACCCGGGGATGTACCTTTTTACGAGTGGTTCGGAGCAGTATTATGGAGCGGAGAGCGAGCAAACCTACTACTAGAGAGCTGACTGTTTTTTGTTCACCATCGGGAAGACTGTGTCTTTCCGATTTTTACCCAACCGGACAATTCATTCTCATTAGCTTACGAAGATTTTCCACACCCCAAATCTTCCCGTTTTACCTGAAATGACAATAAAAACACAACATTATTGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_113#0 CCGCCCACGCGTCCGCGATGCTGCCGTCGATTTCGCCCTTCTGCCTGAAGGTGGAGACCT 60 consensus_113#1 ------------------------------------------------------------ consensus_113#0 GGCTGCGCCTCGCCGGGCTGAAGTATGAGAACATCGACCATAAGCTGAAGCTGCGCTCGA 120 consensus_113#1 ------------------------------------------------------------ consensus_113#0 AGAAGGGACAGCTGCCGTTCGTCGAGGTCAATGGGGAGGAGATTGCCGACTCGACCATCA 180 consensus_113#1 ------------------------------------------------------------ consensus_113#0 TCATGCAGGAGCTGGCGACGCGCTACGACAAGGACCTGGACGCCGCCCTGACCCAG-GAG 239 consensus_113#1 -------------------------CCGCGGACGCGTGGGCGGACGCGTGGGTGAGCGAG 35 * * * *** ** * ** ** *** consensus_113#0 CAGCGCAACATTGCCCACGCGATGATTTCGATGCTGGAGAACCATCTCGTCTGGGTGGTG 299 consensus_113#1 CAGGCTCAGGTCTACTGCACGATC------GCACTGAACGGTGGCGTCTTCTGGGTGAAG 89 *** * * * * **** *** * ** ******** * consensus_113#0 CTGTCCTGGCGCAGCAAGAACACGGAACAGATGCTCAAGGGCTACAAGATCAACCTGCAG 359 consensus_113#1 CACACGTCCGACTTCCTGAAGGTGAACTAAGCACTGGACGGGGACGTCAACCAACCGGTG 149 * * * * * *** * * * ** * ** ** * * * * * * consensus_113#0 CACGCGCTCGGCAGCCGTCTGCCGAATGCGCTGCTGAACTTCTTCTTCAAATTCCAGTTC 419 consensus_113#1 TGTATG-TCTGCGGTC--CCGGTGACCGGCCACCCGGGGATGTACCTT--TTTACGAGTG 204 * ** ** * * * * ** * * * * * * * * ** * * consensus_113#0 AGCCGCAAGGGTGCTAAAAAGGTGAAAGCTCAGGGCCTGGGCGTCCACAAGCCGGAGGAA 479 consensus_113#1 GTTCGGAGCAGTATTATGGAGCGGAGAGCGAGCAAACCTACTACTAGAGAGCTGACTGTT 264 ** * ** ** ** ** *** * *** * * consensus_113#0 ATCGAGGAGTTCGGTCGCAAGGATCTGAAGGTGCTGTCCGAGCTGCTGGCCGATAAGCCA 539 consensus_113#1 TTT--TGTTCACCATCGGGAAGACTGTGTCTTTCCGATTTTTACCCAACCGGACAATTCA 322 * * * *** * ** * * * * * ** ** ** consensus_113#0 TTCTTCTTCGGTGATGAA--CCCACCACGCTC--GACTGTGTTGCATTCTCCGTGTTGGC 595 consensus_113#1 TTCTCATTAGCTTACGAAGATTTTCCACACCCCAAATCTTCCCGTTTTACCTGAAATGAC 382 **** ** * * * *** **** * * * * * ** * * ** * consensus_113#0 C-CAAATTCACTTCATTCTGGACGAGGTTAAGTACGGTCTGAAGGAGTTCATGCAGGAGA 654 consensus_113#1 AATAAAAACACAACATTATTGAC------------------------------------- 405 *** *** **** * *** consensus_113#0 ACTGCCCGAAC 665 consensus_113#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||