These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1135#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [GAGAAATACAAAAACACTCCTTCCTCAGCTAGCGCGTTTTTGTTTTGCCACGACAGCAGCAGCAAAAAGAAGCATCAGCTTGCGGCTATTTACAGATCCAGCAAACTAAGGGTAGATAGAGAAAGCAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAACGTGATGTTAGCAAGATACAATAATAGCGTGACAAGGGTAACGGCGTAAACGTAACGCGACCAGTCAAACCGAAAGAAGTGGTAACGCGTAACGCCGTCGATCCGGTGGCGTTACACAAGCGTATGGAGCTTCGAACCCGAAACTCTTCTAGTCTATACCACGCCCTCTCGTTTTGGCTTGGGGGCGCCCCGTTACCAGGTGTCCCTGTATGAGTGCAATATGCTAGCAGGATTACAAACAGAGAGAGACACACACACACGCAAACACCGCCATGGGTGCGATAAGAGCCGATTACTACTACGTAACTGGCTTACTAGGATGTTATCTATCATCTCCCTCCTTCCAACTCCCGCTCCTCGGGATCGGCCTAGTTCCTGCGTCGGTGGGCAAACCCCCAACGCCCCGAGGGCGTTGCGTGCCATCTTGGAGTGTTTAACGATTTAA] [+] EMBL BM624789 [GAGAAATACAAAAACACTCCTTCCTCAGCTAGCGCGTTTTTGTTTTGCCACGACAGCAGCAGCAAAAAGAAGCATCAGCTTGCGGCTATTTACAGATCCAGCAAACTAAGGGTAGATAGAGAAAGCAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAACGTGATGTTAGCAAGATACAATAATAGCGTGACAAGGGTAACGGCGTAAACGTAACGCGACCAGTCAAACCGAAAGAAGTGGTAACGCGTAACGCCGTCGATCCGGTGGCGTTACACAAGCGTATGGAGCTTCGAACCCGAAACTCTTCTAGTCTATACCACGCCCTCTCGTTTTGGCTTGGGGGCGCCCCGTTACCAGGTGTCCCTGTATGAGTGCAATATGCTAGCAGGATTACAAACAGAGAGAGACACACACACACGCAAACACCGCCATGGGTGCGATAAGAGCCGATTACTACTACGTAACTGGCTTACTAGGATGTTATCTATCATCTCCCTCCTTCCAACTCCCGCTCCTCGGGATCGGCCTAGTTCCTGCGTCGGTGGGCAAACCCCCAACGCCCCGAGGGCGTTGCGTGCCATCTTGGAGTGTTTAACGATTTAA] consensusID : consensus_1135#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [CCGAAACACTCCTTCCTCAGCTAGCGCGTTTTTGTTTTGCCACGACAGCAGCAGCAAAAAGAAGCATCAGCTTGCGGCTATTTACAGATCCAGCAAACTAAGGGTAGATAGAGAAAGCAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAACGTGATGTTAGCAAGATACAATAATAGCGTGACAAGGGTAACGGCGTAAACGTAACGCGACCAGTCAAACTGAAAGAGGTGGTAACGCGTAACGCCGTCGATCCGGTGGCGTTACACAAGCGTATGGAGCTTCGAACCCGAAACTCTTCTAGTCTATACCACGCCCTCTCGTTTTGGCTTGGGGGCGCCCCGTTACCAGGTGTCCCTGTATGAGTGCAATATGCTAGCAGGATTAC] [+] EMBL BM613424 [CCGAAACACTCCTTCCTCAGCTAGCGCGTTTTTGTTTTGCCACGACAGCAGCAGCAAAAAGAAGCATCAGCTTGCGGCTATTTACAGATCCAGCAAACTAAGGGTAGATAGAGAAAGCAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAACGTGATGTTAGCAAGATACAATAATAGCGTGACAAGGGTAACGGCGTAAACGTAACGCGACCAGTCAAACTGAAAGAGGTGGTAACGCGTAACGCCGTCGATCCGGTGGCGTTACACAAGCGTATGGAGCTTCGAACCCGAAACTCTTCTAGTCTATACCACGCCCTCTCGTTTTGGCTTGGGGGCGCCCCGTTACCAGGTGTCCCTGTATGAGTGCAATATGCTAGCAGGATTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1135#0 GAGAAATACAAAAACACTCCTTCCTCAGCTAGCGCGTTTTTGTTTTGCCACGACAGCAGC 60 consensus_1135#1 --------CCGAAACACTCCTTCCTCAGCTAGCGCGTTTTTGTTTTGCCACGACAGCAGC 52 * ************************************************* consensus_1135#0 AGCAAAAAGAAGCATCAGCTTGCGGCTATTTACAGATCCAGCAAACTAAGGGTAGATAGA 120 consensus_1135#1 AGCAAAAAGAAGCATCAGCTTGCGGCTATTTACAGATCCAGCAAACTAAGGGTAGATAGA 112 ************************************************************ consensus_1135#0 GAAAGCAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA------------AGCAAA 168 consensus_1135#1 GAAAGCAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAA 172 ****************************************** ****** consensus_1135#0 CGTGATGTTAGCAAGATACAATAATAGCGTGACAAGGGTAACGGCGTAAACGTAACGCGA 228 consensus_1135#1 CGTGATGTTAGCAAGATACAATAATAGCGTGACAAGGGTAACGGCGTAAACGTAACGCGA 232 ************************************************************ consensus_1135#0 CCAGTCAAACCGAAAGAAGTGGTAACGCGTAACGCCGTCGATCCGGTGGCGTTACACAAG 288 consensus_1135#1 CCAGTCAAACTGAAAGAGGTGGTAACGCGTAACGCCGTCGATCCGGTGGCGTTACACAAG 292 ********** ****** ****************************************** consensus_1135#0 CGTATGGAGCTTCGAACCCGAAACTCTTCTAGTCTATACCACGCCCTCTCGTTTTGGCTT 348 consensus_1135#1 CGTATGGAGCTTCGAACCCGAAACTCTTCTAGTCTATACCACGCCCTCTCGTTTTGGCTT 352 ************************************************************ consensus_1135#0 GGGGGCGCCCCGTTACCAGGTGTCCCTGTATGAGTGCAATATGCTAGCAGGATTACAAAC 408 consensus_1135#1 GGGGGCGCCCCGTTACCAGGTGTCCCTGTATGAGTGCAATATGCTAGCAGGATTAC---- 408 ******************************************************** consensus_1135#0 AGAGAGAGACACACACACACGCAAACACCGCCATGGGTGCGATAAGAGCCGATTACTACT 468 consensus_1135#1 ------------------------------------------------------------ consensus_1135#0 ACGTAACTGGCTTACTAGGATGTTATCTATCATCTCCCTCCTTCCAACTCCCGCTCCTCG 528 consensus_1135#1 ------------------------------------------------------------ consensus_1135#0 GGATCGGCCTAGTTCCTGCGTCGGTGGGCAAACCCCCAACGCCCCGAGGGCGTTGCGTGC 588 consensus_1135#1 ------------------------------------------------------------ consensus_1135#0 CATCTTGGAGTGTTTAACGATTTAA 613 consensus_1135#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||