These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CCGATTGTGATGATTTAATCCGTCGTCTGTAGAGCAGTGGTGGTAAATATTTAGCTGAAGCAACCAACAACCAATGTAAGTTTCCTTTCCCCTTCTCTCCCCATCTCGATATGTTCTCCTGCCTAGTGTACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAAACAATAGATAATATAATTTGTGTCGTCCCTCCGCTACTTTCTTGCCATATATACATGTGGATGGGAATGGGAGCAGAAGCTAAAAGGGGAAACTCCCTGTTAAGCCCTCCTACCCCCAGTAGCACACCGTATCGCCCAGTCACCACGTGGTCATTCTTTGCTGCTACAGCTATCCCCTCCCACCTTCCCCCATCCACGCCGATTTGCGCGCAATGCTATATGATGAACGTCGCCTCTCTGGCGCGCCGTATGTGATCGTGTGATTCGTGAATGTTTTCTTTGTTTTTGTGGACAAAAGAACAACAAGAAACGCTAGTCTGTTTTATATAAATGTAACACACCCCCTCCTCCCCTTCCTCCCCTCTGTACATGGACCTGTAACTATATAGCTATATATATATAAAATGTATATGTGAATATCGTTTTATTTTTTAAACTAT] [+] EMBL BM613336 [CCGATTGTGATGATTTAATCCGTCGTCTGTAGAGCAGTGGTGGTAAATATTTAGCTGAAGCAACCAACAACCAATGTAAGTTTCCTTTCCCCTTCTCTCCCCATCTCGATATGTTCTCCTGCCTAGTGTACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAAACAATAGATAATATAATTTGTGTCGTCCCTCCGCTACTTTCTTGCCATATATACATGTGGATGGGAATGGGAGCAGAAGCTAAAAGGGGAAACTCCCTGTTAAGCCCTCCTACCCCCAGTAGCACACCGTATCGCCCAGTCACCACGTGGTCATTCTTTGCTGCTACAGCTATCCCCTCCCACCTTCCCCCATCCACGCCGATTTGCGCGCAATGCTATATGATGAACGTCGCCTCTCTGGCGCGCCGTATGTGATCGTGTGATTCGTGAATGTTTTCTTTGTTTTTGTGGACAAAAGAACAACAAGAAACGCTAGTCTGTTTTATATAAATGTAACACACCCCCTCCTCCCCTTCCTCCCCTCTGTACATGGACCTGTAACTATATAGCTATATATATATAAAATGTATATGTGAATATCGTTTTATTTTTTAAACTAT] consensusID : consensus_1144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [CGAGGCAAGAATCGCACGAGNNGNAATGTAAGTTTCCTTTCCCCTTTCTCTCCCCATCTCCATATGTTCTCCTGCCAAGTGTACAGAAAAGAGAGGGAGAGAGAGAGAGAGAAGAAAAACAATAGATAATATAATTTGTGTCGTCCCTCCGCTACTTTCTTGCCATATATACATGTGGATGGGAATGGGAGCAGAAGCTTAAAGGGGAAACTCCCTGTTAAGCCACACCCTCCGTACCCCGCAGTAGCTCACCGTATCGCCCAGTCACCACGTGG] [+] EMBL BX468045 [CGAGGCAAGAATCGCACGAGNNGNAATGTAAGTTTCCTTTCCCCTTTCTCTCCCCATCTCCATATGTTCTCCTGCCAAGTGTACAGAAAAGAGAGGGAGAGAGAGAGAGAGAAGAAAAACAATAGATAATATAATTTGTGTCGTCCCTCCGCTACTTTCTTGCCATATATACATGTGGATGGGAATGGGAGCAGAAGCTTAAAGGGGAAACTCCCTGTTAAGCCACACCCTCCGTACCCCGCAGTAGCTCACCGTATCGCCCAGTCACCACGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1144#0 CCGATTGTGATGATTTAATCCGTCGTCTGTAGAGCAGTGGTGGTAAATATTTAGCTGAAG 60 consensus_1144#1 -------------------------------------------------CGAGGCAAGAA 11 ** * consensus_1144#0 CAAC-CAACAACCAATGTAAGTTTCCTTTCCCCTT-CTCTCCCCATCTCGATATGTTCTC 118 consensus_1144#1 TCGCACGAGNNGNAATGTAAGTTTCCTTTCCCCTTTCTCTCCCCATCTCCATATGTTCTC 71 * * * ********************** ************* ********** consensus_1144#0 CTGCCTAGTGTACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 178 consensus_1144#1 CTGCCAAGTGTACAGAAAAGAGAGGGAGAGAGAGAGAGAGA------------------- 112 ***** *********** ****** **************** consensus_1144#0 AAGAAAAACAATAGATAATATAATTTGTGTCGTCCCTCCGCTACTTTCTTGCCATATATA 238 consensus_1144#1 -AGAAAAACAATAGATAATATAATTTGTGTCGTCCCTCCGCTACTTTCTTGCCATATATA 171 *********************************************************** consensus_1144#0 CATGTGGATGGGAATGGGAGCAGAAGCTAAAAGGGGAAACTCCCTGTTAAGCC-----CT 293 consensus_1144#1 CATGTGGATGGGAATGGGAGCAGAAGCTTAAAGGGGAAACTCCCTGTTAAGCCACACCCT 231 **************************** ************************ ** consensus_1144#0 CC-TACCCC-CAGTAGCACACCGTATCGCCCAGTCACCACGTGGTCATTCTTTGCTGCTA 351 consensus_1144#1 CCGTACCCCGCAGTAGCTCACCGTATCGCCCAGTCACCACGTGG---------------- 275 ** ****** ******* ************************** consensus_1144#0 CAGCTATCCCCTCCCACCTTCCCCCATCCACGCCGATTTGCGCGCAATGCTATATGATGA 411 consensus_1144#1 ------------------------------------------------------------ consensus_1144#0 ACGTCGCCTCTCTGGCGCGCCGTATGTGATCGTGTGATTCGTGAATGTTTTCTTTGTTTT 471 consensus_1144#1 ------------------------------------------------------------ consensus_1144#0 TGTGGACAAAAGAACAACAAGAAACGCTAGTCTGTTTTATATAAATGTAACACACCCCCT 531 consensus_1144#1 ------------------------------------------------------------ consensus_1144#0 CCTCCCCTTCCTCCCCTCTGTACATGGACCTGTAACTATATAGCTATATATATATAAAAT 591 consensus_1144#1 ------------------------------------------------------------ consensus_1144#0 GTATATGTGAATATCGTTTTATTTTTTAAACTAT 625 consensus_1144#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||