cluster # 1147

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Anopheles gambiae
cluster # 1147 cluster # 1147 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1147#0 length = 687 sequences # 1

consensus_1147#1 length = 619 sequences # 1

consensusID : consensus_1147#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [CCGCCCACGCGTCCGGTGAAGTACCACTTTGATGAGATGAAACGGGTATCGCGTACGAAGCGCCAGTACTACTGGACACCGATCAAGAACACCCCGTTCACGCTGGTGGTCACGTATCCCGAGACGTACGGGCTCAATCGGCTGCAGATACGCACGGAGGACGAGATCCACCGTATTCACGCGAAAGGCAGCAACGTGGCCAGCTTCTTCACCGGTAACAATTGGAAAATCCATCCGGATTGGGTGTACTGTAAATATTTAAACGAACACCCGAACGAAACGTTCGCCACACCGGAGCTGGAGCTGAAGCATTTCCTCGAGCGCATGAAGCTCGGTGGCTGGAAGTGGCCGTCAAACCGCACACCGCCCCCACCGGAACATGCCATGTTCTCTAATATAACGGGCAAATTGCCAGATAAGGACTATTATTACTGCGATCGCGGTTTGATGCAAGCGCTCGTCTACGACGCAAAGGTAACGGAATGGTTTTCGAAGAACGTTAGCGGGAGCGGCGGAAACAAGGACGAGAAAGGGAACGAGTTTAAACAGCGCTTTGGCATCACCGTCTCTTTTCTGGCCACGCACTCAGGGCTAACGCGATGGCAGGAGTACGCTACCGGTGCGGACGAATCGAAACAAGCCGAACCCGATTTTAGCGAAACGCACAACCGAGCGATCGACGAGGTG]

[+] EMBL BM634039             [CCGCCCACGCGTCCGGTGAAGTACCACTTTGATGAGATGAAACGGGTATCGCGTACGAAGCGCCAGTACTACTGGACACCGATCAAGAACACCCCGTTCACGCTGGTGGTCACGTATCCCGAGACGTACGGGCTCAATCGGCTGCAGATACGCACGGAGGACGAGATCCACCGTATTCACGCGAAAGGCAGCAACGTGGCCAGCTTCTTCACCGGTAACAATTGGAAAATCCATCCGGATTGGGTGTACTGTAAATATTTAAACGAACACCCGAACGAAACGTTCGCCACACCGGAGCTGGAGCTGAAGCATTTCCTCGAGCGCATGAAGCTCGGTGGCTGGAAGTGGCCGTCAAACCGCACACCGCCCCCACCGGAACATGCCATGTTCTCTAATATAACGGGCAAATTGCCAGATAAGGACTATTATTACTGCGATCGCGGTTTGATGCAAGCGCTCGTCTACGACGCAAAGGTAACGGAATGGTTTTCGAAGAACGTTAGCGGGAGCGGCGGAAACAAGGACGAGAAAGGGAACGAGTTTAAACAGCGCTTTGGCATCACCGTCTCTTTTCTGGCCACGCACTCAGGGCTAACGCGATGGCAGGAGTACGCTACCGGTGCGGACGAATCGAAACAAGCCGAACCCGATTTTAGCGAAACGCACAACCGAGCGATCGACGAGGTG]




>consensus_1147#0
CCGCCCACGCGTCCGGTGAAGTACCACTTTGATGAGATGAAACGGGTATCGCGTACGAAG
CGCCAGTACTACTGGACACCGATCAAGAACACCCCGTTCACGCTGGTGGTCACGTATCCC
GAGACGTACGGGCTCAATCGGCTGCAGATACGCACGGAGGACGAGATCCACCGTATTCAC
GCGAAAGGCAGCAACGTGGCCAGCTTCTTCACCGGTAACAATTGGAAAATCCATCCGGAT
TGGGTGTACTGTAAATATTTAAACGAACACCCGAACGAAACGTTCGCCACACCGGAGCTG
GAGCTGAAGCATTTCCTCGAGCGCATGAAGCTCGGTGGCTGGAAGTGGCCGTCAAACCGC
ACACCGCCCCCACCGGAACATGCCATGTTCTCTAATATAACGGGCAAATTGCCAGATAAG
GACTATTATTACTGCGATCGCGGTTTGATGCAAGCGCTCGTCTACGACGCAAAGGTAACG
GAATGGTTTTCGAAGAACGTTAGCGGGAGCGGCGGAAACAAGGACGAGAAAGGGAACGAG
TTTAAACAGCGCTTTGGCATCACCGTCTCTTTTCTGGCCACGCACTCAGGGCTAACGCGA
TGGCAGGAGTACGCTACCGGTGCGGACGAATCGAAACAAGCCGAACCCGATTTTAGCGAA
ACGCACAACCGAGCGATCGACGAGGTG

consensusID : consensus_1147#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence

                              [CCGCCCACGCGTCCGCGCCGAGAGAATGCGACGCGGGTGGCCAACATACTCGGTGTGGCTGGAGCCGATGTGCCAATAGCGGAAATTAAAAAATACCTTAAACCTCACCTGCTTGGTGTAAATGGATACGCCTTCATTGTTACCAACAATGGCTACATCCTCACGCATCCTGACTTCCGTCCAGTTTTTCAAGATATTCTCAAGCCAGCCTACAACACGGTCGACATGATCGAGGTCGAGTTGACCGATGACGACCAAGGGCCACGAGAGTTCAACAACCAACTGCTTAACATGCGTGAATCTATCATTAATCAGTCGACTGGAGCCAAGTGGATACGGGTGAAGTACCACTTTGATGAGATGAAACGGGTATCGCGTACGAAGCGCCAGTACTACTGGACACCGATCAAGAACACCCCGTTCACGCTGGTGGTCACGTATCCCGAGACGTACGGGCTCAATCGGCTGCAGATACGCACGGAGGACGAGATCCACCGTATTCACGCGAAAGGCAGCAACGTGGCCAGCTTCTTCACCGGTAACAATTGGAAAATCCATCCGGATTGGGTGTACTGTAAATATTTAAACGAACACCCGAACGAAACGTTCGCCACACCGG]

[+] EMBL BM613321             [CCGCCCACGCGTCCGCGCCGAGAGAATGCGACGCGGGTGGCCAACATACTCGGTGTGGCTGGAGCCGATGTGCCAATAGCGGAAATTAAAAAATACCTTAAACCTCACCTGCTTGGTGTAAATGGATACGCCTTCATTGTTACCAACAATGGCTACATCCTCACGCATCCTGACTTCCGTCCAGTTTTTCAAGATATTCTCAAGCCAGCCTACAACACGGTCGACATGATCGAGGTCGAGTTGACCGATGACGACCAAGGGCCACGAGAGTTCAACAACCAACTGCTTAACATGCGTGAATCTATCATTAATCAGTCGACTGGAGCCAAGTGGATACGGGTGAAGTACCACTTTGATGAGATGAAACGGGTATCGCGTACGAAGCGCCAGTACTACTGGACACCGATCAAGAACACCCCGTTCACGCTGGTGGTCACGTATCCCGAGACGTACGGGCTCAATCGGCTGCAGATACGCACGGAGGACGAGATCCACCGTATTCACGCGAAAGGCAGCAACGTGGCCAGCTTCTTCACCGGTAACAATTGGAAAATCCATCCGGATTGGGTGTACTGTAAATATTTAAACGAACACCCGAACGAAACGTTCGCCACACCGG]




>consensus_1147#1
CCGCCCACGCGTCCGCGCCGAGAGAATGCGACGCGGGTGGCCAACATACTCGGTGTGGCT
GGAGCCGATGTGCCAATAGCGGAAATTAAAAAATACCTTAAACCTCACCTGCTTGGTGTA
AATGGATACGCCTTCATTGTTACCAACAATGGCTACATCCTCACGCATCCTGACTTCCGT
CCAGTTTTTCAAGATATTCTCAAGCCAGCCTACAACACGGTCGACATGATCGAGGTCGAG
TTGACCGATGACGACCAAGGGCCACGAGAGTTCAACAACCAACTGCTTAACATGCGTGAA
TCTATCATTAATCAGTCGACTGGAGCCAAGTGGATACGGGTGAAGTACCACTTTGATGAG
ATGAAACGGGTATCGCGTACGAAGCGCCAGTACTACTGGACACCGATCAAGAACACCCCG
TTCACGCTGGTGGTCACGTATCCCGAGACGTACGGGCTCAATCGGCTGCAGATACGCACG
GAGGACGAGATCCACCGTATTCACGCGAAAGGCAGCAACGTGGCCAGCTTCTTCACCGGT
AACAATTGGAAAATCCATCCGGATTGGGTGTACTGTAAATATTTAAACGAACACCCGAAC
GAAACGTTCGCCACACCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1147#0      CCGCCCACGCGTCCGGTGAAGTACCACTTTGATGAGATGAAACGGGTATCGCGTACGAAG 60
consensus_1147#1      CCGCCCACGCGTCCG-----------CGCCGAGAGAATGCGACGCGGGTGGCCAACATAC 49
                      ***************           *   **    ***  *** *  * **  **  * 

consensus_1147#0      CGCCAGTACTACTGGACACCGATCAAGAACACCCCGTTCACGCTGGTGGTCACGTATCCC 120
consensus_1147#1      T--CGGTGTGGCTGGA-GCCGAT-------GTGCCAATAGCGGAAATTAAAAAATACCTT 99
                         * **    *****  *****          **  *  **    *    *  ** *  

consensus_1147#0      GAGACGTACGGGCTCAATCGGCTGCAGATACGC----ACGGAGGACGAGATCCACCGTAT 176
consensus_1147#1      AAACCTCACCTGCTTGGT-GTAAATGGATACGCCTTCATTGTTACCAACAATGGCTACAT 158
                       *  *  **  ***   * *      *******    *  *    * * *    *   **

consensus_1147#0      TCACGCGAAAGGCAGCAACGTGGCCAGCTTCTTCACCGGTAACAATTGGAAAATCCATCC 236
consensus_1147#1      CCTCACGCATCCTGACTTC-CGTCCAGTTTTTCAA--GATATTCTCAAGCCAGCCTA-CA 214
                       * * ** *      *  *  * **** ** *  *  * **       *  *  * * * 

consensus_1147#0      GGATTGGGTGTACTGTAAATATTTAAACGAACACCCGAACGAAACGTTCGCCACACCGGA 296
consensus_1147#1      ACACGGTCGACATGATCGAGGTCGAGTTGA----CCGATGACGACCAAGGGC-CACGAGA 269
                        *  *     *   *  *  *  *   **    ****     **    * * ***  **

consensus_1147#0      GCTGGAGCTGAAGCATTTCCTCGAGCGCATGAAGCTCGGTGGCTGGAAGTGGCCGTCAAA 356
consensus_1147#1      GTTCAA--CAACCAACTGCTTAACATGCGTGAATCT--ATCATT--AATCAGTCGACTGG 323
                      * *  *    *   * * * *     ** **** **   *   *  **   * ** *   

consensus_1147#0      CCGCACACCGCCCCCACCGGAACATGCCATGTTCTCTAATATAACGGGCAAATTGCCAGA 416
consensus_1147#1      AGCCAAGTGGATACGGGTGAAGTACCACTT-TGATGAGATGAAACGGGT--ATCGCGTAC 380
                         **    *   *    * *  *   * * *  *   **  ******   ** **    

consensus_1147#0      TAAGGACTATTATTACTGCGATCGCGGTTTGATGCAAGCGCTCGTCTACGACGCAAAGGT 476
consensus_1147#1      GAAGCGCCAGTACTACTG-GACACCGATCAAGAACA---CCCCGTTCACGCTG--GTGGT 434
                       ***  * * ** ***** **   ** *      **    * ***  ***  *    ***

consensus_1147#0      AACGGAATGGTTTTCGAAGAACGTTAGCGGGAGCGGCGGAAACAAGGACGAGAAAGGGAA 536
consensus_1147#1      CACGTA-----TCCCGAGACGTACGGGCTCAATCGGCTG---CAGATACGC-ACGGAGGA 485
                       *** *     *  ***         **   * **** *   **   ***  *  * * *

consensus_1147#0      CGAGTTTAAACAGCGCTTTGGCATCACCGTCTCTTTTCTGGCCA-CGCACTCAGGGCTAA 595
consensus_1147#1      CGAGATC---CACCGTATTCACGCGAAAGGCAGCAACGTGGCCAGCTTCTTCACCGGTAA 542
                      **** *    ** **  **  *   *  * *       ****** *    ***  * ***

consensus_1147#0      CGCGATGGCAGGAGTACGCTACCGGTGCGGACGAATCGAAACAAGCCGAACCCG-ATTTT 654
consensus_1147#1      C-----AATTGGAAAATCCATCCGGATTGGGTGTACTGTAAATATTTAAACGAACACCCG 597
                      *         ***  *  *  ****   **  * *  * **  *    ***    *    

consensus_1147#0      AGCGAAACGCACAACCGAGCGATCGACGAGGTG 687
consensus_1147#1      AACGAAACGTTCGCCACACCGG----------- 619
                      * *******  *  *  * **