These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [GACGCCACCAATGCTTCCGTTCGGGTAGAGACTAGAGGAGGTTGAGGAGGAAGAGAGAGGGTTGTCCGGTGTCCCGGCGTCGCCGTTCGTGTCGGCAGGGCAGCGCTCGTTCGTCTCGTCCGATCCCGGACCGTGGCCGCACCGGTCGGCAAACTTATGCCCGAAGCTCAGCCACTCCCGCTCCACTAGCACGCGAAAGCCCTCGATCGTGCGGTAGTACGGATCGAGACAGAGCTGCGCCGTGGCCACGATCTGCGGCGTGCGGTCCCACCCATCGGAACAGTGTACCAGCACCGGCCGACCGTTGCGCTCGATCGCGTGGCACACCACCATCGAGGCCGCCAGCAAGCCGGACAGATGCTGCAGCCAAAGCGTTCGCTCCAGCAATCCAAGCCAATTTGGAATGTCCGCCTGCGAGGCGCAGAGCTGC] [+] EMBL AGA283684 [GACGCCACCAATGCTTCCGTTCGGGTAGAGACTAGAGGAGGTTGAGGAGGAAGAGAGAGGGTTGTCCGGTGTCCCGGCGTCGCCGTTCGTGTCGGCAGGGCAGCGCTCGTTCGTCTCGTCCGATCCCGGACCGTGGCCGCACCGGTCGGCAAACTTATGCCCGAAGCTCAGCCACTCCCGCTCCACTAGCACGCGAAAGCCCTCGATCGTGCGGTAGTACGGATCGAGACAGAGCTGCGCCGTGGCCACGATCTGCGGCGTGCGGTCCCACCCATCGGAACAGTGTACCAGCACCGGCCGACCGTTGCGCTCGATCGCGTGGCACACCACCATCGAGGCCGCCAGCAAGCCGGACAGATGCTGCAGCCAAAGCGTTCGCTCCAGCAATCCAAGCCAATTTGGAATGTCCGCCTGCGAGGCGCAGAGCTGC] consensusID : consensus_1148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [CGTTGGCAGTTCCGGAACGATGGGTTGAAAGCGGTAAGGGTGTCCTGCTTCGCTACCCAGCGTGCTGCTGCTGCAGCGTCGTCGCACCATTGCTGATGCTGGTGGTCGTAAAGGAGGGTCGAACATTGGTGGTGGCGGTTGGAATTAGTGTGGCTGCTGCGGCGGCCGCTAAACTGTTGACGCCACCAATGCTTCCGTTCGGGTAGAGACTAGAGGAGGTTGAGGAGGAAGAGAGAGGGTTGTCCGGTGTCCCGGCGTCGCCGTTCGTGTCGGCAGGGCAGCGCGCAGGACTGCGCCCAGCTGCTAGTAGGTTGCGCTGGTTCTTGATGGCTTGCTCCAGCTCTTCGTCCGATTGGTTCAGCTCCTGCGTGAGGCTTGCAGCTTTTNCCTCGGGCGATT] [-] EMBL AL932809 [CGTTGGCAGTTCCGGAACGATGGGTTGAAAGCGGTAAGGGTGTCCTGCTTCGCTACCCAGCGTGCTGCTGCTGCAGCGTCGTCGCACCATTGCTGATGCTGGTGGTCGTAAAGGAGGGTCGAACATTGGTGGTGGCGGTTGGAATTAGTGTGGCTGCTGCGGCGGCCGCTAAACTGTTGACGCCACCAATGCTTCCGTTCGGGTAGAGACTAGAGGAGGTTGAGGAGGAAGAGAGAGGGTTGTCCGGTGTCCCGGCGTCGCCGTTCGTGTCGGCAGGGCAGCGCGCAGGACTGCGCCCAGCTGCTAGTAGGTTGCGCTGGTTCTTGATGGCTTGCTCCAGCTCTTCGTCCGATTGGTTCAGCTCCTGCGTGAGGCTTGCAGCTTTTNCCTCGGGCGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1148#0 GACGCCACCAATGCTTCCGTTCGGGTAGAGACTAGAGGAGGTTGAGGAGGAAGAGAGAGG 60 consensus_1148#1 -----CGTTGGCAGTTCCGGAACGATGGG--TTGAAAGCGGT--AAGGGTGTCCTGCTTC 51 * ***** * * * * * * *** * * * consensus_1148#0 GTTGTCCGGTGTCCCGGCGTCGCCGT-TCGTGTCGGCAGGGCAGCGCTCGTTCGTCTCGT 119 consensus_1148#1 GCTACCCAGCGTGCTGCTGCTGCAGCGTCGTCGCACCATTGCTGATGCTGGTGGTCGTAA 111 * * ** * ** * * * ** * **** * ** ** * * * *** consensus_1148#0 CCGATC-CCGGACCGTGGCCGCACCGGTCGGCAAACTTATGCCCGAAGCTCAGCCACTCC 178 consensus_1148#1 AGGAGGGTCGAACATTGGTGGTGGCGGTTGGAATTAGTGTGGCTGCTGC--GGCGGCCGC 169 ** ** ** *** * **** ** * * ** * * ** ** * * consensus_1148#0 CGCTCCACTAGCAC-GCGAAAGCCCTCGATCGTGCGGTAGTACGGATCGAGACAGAGCTG 237 consensus_1148#1 TAAACTGTTGACGCCACCAATGCTTCCGTTCGGGTAGAG--ACTAGAGGAGGTTGAGGAG 227 * * * * * ** ** ** *** * * ** *** *** * consensus_1148#0 CGCCGTGGCCACGATCTGCGGCGTGC-GGTCCCACCCATCGGAACAGTGTACCAGCACCG 296 consensus_1148#1 -GAAGAGAGAGGGTTGTCCGGTGTCCCGGCGTCGCCGTTCGTGTCGGCAGGGCAGCGC-- 284 * * * * * * *** ** * ** * ** *** * * **** * consensus_1148#0 GCCGACCGTTGCGCTCGATCGCGTGGCACACCACCATCGAGGCCGCCAGCAAGCCGGACA 356 consensus_1148#1 GCAGGAC--TGCGCCCAGCTGC-TAGTAGGTTGCGCT---GGTTCTTGATGGCTTGCTCC 338 ** * * ***** * ** * * * * * ** * * consensus_1148#0 GATGCTGCAGCCAAAGCGTTC-GCTCCAGCAATCCAAGCCAATTTGGAATGTCCGCCTGC 415 consensus_1148#1 AGCTCTTCGTCCGATTGGTTCAGCTCCTGCG---TGAG---GCTTGCAGCTTTTNCCTCG 392 ** * ** * **** ***** ** ** *** * * *** consensus_1148#0 GAGGCGCAGAGCTGC 430 consensus_1148#1 GGCGATT-------- 399 * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||