cluster # 1159

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Anopheles gambiae
cluster # 1159 cluster # 1159 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1159#0 length = 637 sequences # 1

consensus_1159#1 length = 430 sequences # 1

consensusID : consensus_1159#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [CCGCAATGTACAGCCAAACCAAAAGCCACCTTCCCATCAGCAACAGGCAGTCCCAGCCTCAGCACAACAGCAGCAGCCACCACAGCAACAACATACCGGAAACGTTGCATCTTCCCCACAACAGCAGCCACAGCCACAGCAACAGCAACCACCTGCAGCACCGGCACAGCCATCCGTTGTACAGGTGAAACACTAGAACGACTCCGTCTTGAAGCGACAAGCGTTGGATGGATAAACTGCAGCCAAACGAAAGCATGAAACAGCCGAATCAAACTGAATCAACAACACCCACAATGACGCGCCAATGATGAAACAACATTCTCGTTTTAGCGTTCCGAAGCTTCCACACATAACCAAACAGCGAGAACACTCCGTTTGCGAAGCAAACGATTACACACGACTCAAAATGTAGATAGGTAACGGGGGCTGAACGAAATGTCTAAGGTATTACAACCAACCGTGCTGATTCCGTAAAAACACATGCCCCACGTTCCCCATTTGACCTGACCCCTTCGTCCTTGGAACTTTGGACAGAGAAGAGATTTGGTCGGTCTGTCGGTGGGCGAAAGGGGGGCCATGTTCGTATTGTCGTAAAACTAACATTACCATTTATCAGCAGATTAACGCAATTATCTTG]

[+] EMBL BM613183             [CCGCAATGTACAGCCAAACCAAAAGCCACCTTCCCATCAGCAACAGGCAGTCCCAGCCTCAGCACAACAGCAGCAGCCACCACAGCAACAACATACCGGAAACGTTGCATCTTCCCCACAACAGCAGCCACAGCCACAGCAACAGCAACCACCTGCAGCACCGGCACAGCCATCCGTTGTACAGGTGAAACACTAGAACGACTCCGTCTTGAAGCGACAAGCGTTGGATGGATAAACTGCAGCCAAACGAAAGCATGAAACAGCCGAATCAAACTGAATCAACAACACCCACAATGACGCGCCAATGATGAAACAACATTCTCGTTTTAGCGTTCCGAAGCTTCCACACATAACCAAACAGCGAGAACACTCCGTTTGCGAAGCAAACGATTACACACGACTCAAAATGTAGATAGGTAACGGGGGCTGAACGAAATGTCTAAGGTATTACAACCAACCGTGCTGATTCCGTAAAAACACATGCCCCACGTTCCCCATTTGACCTGACCCCTTCGTCCTTGGAACTTTGGACAGAGAAGAGATTTGGTCGGTCTGTCGGTGGGCGAAAGGGGGGCCATGTTCGTATTGTCGTAAAACTAACATTACCATTTATCAGCAGATTAACGCAATTATCTTG]




>consensus_1159#0
CCGCAATGTACAGCCAAACCAAAAGCCACCTTCCCATCAGCAACAGGCAGTCCCAGCCTC
AGCACAACAGCAGCAGCCACCACAGCAACAACATACCGGAAACGTTGCATCTTCCCCACA
ACAGCAGCCACAGCCACAGCAACAGCAACCACCTGCAGCACCGGCACAGCCATCCGTTGT
ACAGGTGAAACACTAGAACGACTCCGTCTTGAAGCGACAAGCGTTGGATGGATAAACTGC
AGCCAAACGAAAGCATGAAACAGCCGAATCAAACTGAATCAACAACACCCACAATGACGC
GCCAATGATGAAACAACATTCTCGTTTTAGCGTTCCGAAGCTTCCACACATAACCAAACA
GCGAGAACACTCCGTTTGCGAAGCAAACGATTACACACGACTCAAAATGTAGATAGGTAA
CGGGGGCTGAACGAAATGTCTAAGGTATTACAACCAACCGTGCTGATTCCGTAAAAACAC
ATGCCCCACGTTCCCCATTTGACCTGACCCCTTCGTCCTTGGAACTTTGGACAGAGAAGA
GATTTGGTCGGTCTGTCGGTGGGCGAAAGGGGGGCCATGTTCGTATTGTCGTAAAACTAA
CATTACCATTTATCAGCAGATTAACGCAATTATCTTG

consensusID : consensus_1159#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCGAGAACACTCCGTTTGCGAAGCAAACGATTACACACGACTCAACATGTAGATAGGTAACGGGGGCTGAACGAAATGTCTAAGGTATTACAACCAACCGTGCTGATTCCGTAAAAACACATGCCCCACGTTCCCCATTTGACCTGACCCCTTCGTCCTTGGAACTTTGGACAGAGAAGAGACTTGGTCGGTCTGTCGGTGGGCGAAAGGGGGGCCATGTTCGTATTGTCGTAAAACTAACATTACCATTTATAGCAGATTAACGCAATTATCTTGAATACTACTTTGTGATGAAATTACTGTAGCGTGTAGCGAATTACCCGTGTAATGTTCGTTTTTTTTTATTACTCTTTTTTGTCAAATATATATATGAAGTAGTCTAGCAAGAAGAAAACAATTTGCC]

[+] EMBL BM646325             [CCGCCCACGCGTCCGCCCACGCGTCCGGCGAGAACACTCCGTTTGCGAAGCAAACGATTACACACGACTCAACATGTAGATAGGTAACGGGGGCTGAACGAAATGTCTAAGGTATTACAACCAACCGTGCTGATTCCGTAAAAACACATGCCCCACGTTCCCCATTTGACCTGACCCCTTCGTCCTTGGAACTTTGGACAGAGAAGAGACTTGGTCGGTCTGTCGGTGGGCGAAAGGGGGGCCATGTTCGTATTGTCGTAAAACTAACATTACCATTTATAGCAGATTAACGCAATTATCTTGAATACTACTTTGTGATGAAATTACTGTAGCGTGTAGCGAATTACCCGTGTAATGTTCGTTTTTTTTTATTACTCTTTTTTGTCAAATATATATATGAAGTAGTCTAGCAAGAAGAAAACAATTTGCC]




>consensus_1159#1
CCGCCCACGCGTCCGCCCACGCGTCCGGCGAGAACACTCCGTTTGCGAAGCAAACGATTA
CACACGACTCAACATGTAGATAGGTAACGGGGGCTGAACGAAATGTCTAAGGTATTACAA
CCAACCGTGCTGATTCCGTAAAAACACATGCCCCACGTTCCCCATTTGACCTGACCCCTT
CGTCCTTGGAACTTTGGACAGAGAAGAGACTTGGTCGGTCTGTCGGTGGGCGAAAGGGGG
GCCATGTTCGTATTGTCGTAAAACTAACATTACCATTTATAGCAGATTAACGCAATTATC
TTGAATACTACTTTGTGATGAAATTACTGTAGCGTGTAGCGAATTACCCGTGTAATGTTC
GTTTTTTTTTATTACTCTTTTTTGTCAAATATATATATGAAGTAGTCTAGCAAGAAGAAA
ACAATTTGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1159#0      CCGCAATGTACAGCCAAACCAAAAGCCACCTTCCCATCAGCAACAGGCAGTCCCAGCCTC 60
consensus_1159#1      ------------------------------------------------------------
                                                                                  

consensus_1159#0      AGCACAACAGCAGCAGCCACCACAGCAACAACATACCGGAAACGTTGCATCTTCCCCACA 120
consensus_1159#1      ------------------------------------------------------------
                                                                                  

consensus_1159#0      ACAGCAGCCACAGCCACAGCAACAGCAACCACCTGCAGCACCGGCACAGCCATCCGTTGT 180
consensus_1159#1      ------------------------------------------------------------
                                                                                  

consensus_1159#0      ACAGGTGAAACACTAGAACGACTCCGTCTTGAAGCGACAAGCGTTGGATGGATAAACTGC 240
consensus_1159#1      ------------------------------------------------------------
                                                                                  

consensus_1159#0      AGCCAAACGAAAGCATGAAACAGCCGAATCAAACTGAATCAACAACACCCACAATGACGC 300
consensus_1159#1      ------------------------------------------------------------
                                                                                  

consensus_1159#0      GCCAATGATGAAACAACATTCTCGTTTTAGCGTTCCGAAGCTTCCACACATAACCAAACA 360
consensus_1159#1      -------------------------------CCGCCCACGCGTCCGCCCACG--CGTCCG 27
                                                        ** * ** *** * **    *   * 

consensus_1159#0      GCGAGAACACTCCGTTTGCGAAGCAAACGATTACACACGACTCAAAATGTAGATAGGTAA 420
consensus_1159#1      GCGAGAACACTCCGTTTGCGAAGCAAACGATTACACACGACTCAACATGTAGATAGGTAA 87
                      ********************************************* **************

consensus_1159#0      CGGGGGCTGAACGAAATGTCTAAGGTATTACAACCAACCGTGCTGATTCCGTAAAAACAC 480
consensus_1159#1      CGGGGGCTGAACGAAATGTCTAAGGTATTACAACCAACCGTGCTGATTCCGTAAAAACAC 147
                      ************************************************************

consensus_1159#0      ATGCCCCACGTTCCCCATTTGACCTGACCCCTTCGTCCTTGGAACTTTGGACAGAGAAGA 540
consensus_1159#1      ATGCCCCACGTTCCCCATTTGACCTGACCCCTTCGTCCTTGGAACTTTGGACAGAGAAGA 207
                      ************************************************************

consensus_1159#0      GATTTGGTCGGTCTGTCGGTGGGCGAAAGGGGGGCCATGTTCGTATTGTCGTAAAACTAA 600
consensus_1159#1      GACTTGGTCGGTCTGTCGGTGGGCGAAAGGGGGGCCATGTTCGTATTGTCGTAAAACTAA 267
                      ** *********************************************************

consensus_1159#0      CATTACCATTTATCAGCAGATTAACGCAATTATCTTG----------------------- 637
consensus_1159#1      CATTACCATTTAT-AGCAGATTAACGCAATTATCTTGAATACTACTTTGTGATGAAATTA 326
                      ************* ***********************                       

consensus_1159#0      ------------------------------------------------------------
consensus_1159#1      CTGTAGCGTGTAGCGAATTACCCGTGTAATGTTCGTTTTTTTTTATTACTCTTTTTTGTC 386
                                                                                  

consensus_1159#0      --------------------------------------------
consensus_1159#1      AAATATATATATGAAGTAGTCTAGCAAGAAGAAAACAATTTGCC 430