These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGCTGCGCAGCGCTACGCTCACACAGTGCGGCTAGAAAGCATCGAGAAGTGCAAAGCCGTAGAGAAACAGCGTTTGCCAGGCCAGGGCTACGGGGTTCCTCTGCTCTGCGGGCGGAGAAAAATCGTCGCCAAGCCAAGACGAAGAAGTGGAAGACGTCGACGAACAAGAAGCAGAACAAGTAGCGAGCAATCTCGTTTTCTTCATACACCATAAGCTCACCGTCGTCCGGAAAGTATGGCCACCAACAATTACTTTGGGTTTCCGCACGGAGCCACACAGTATGGCACGACGGCACCTGGGACCGCGTATCCGACGACACAGACGGGATACGCAGTAGCACCAGCGCCGACACCGGCTGCACCTACTTACGGAACGGCACGTCCAACCGGTTACGACCAGGCGTACCAGCCCGCTGCGACACCAGGGACATACGCAACCACGGCAACGGCCGCAACATACGACTACGGGTACGGCCGTACGACGCAGACGTACGATACTTCAAAAACGTACTACCAGCAGGCGGCCGGGGCAACGGCCGGCTACTCGACCCCGACCGGATACGACGCGGGCGGCACTGCGCCAAAGGTTATCGCCGGGTTTCAGCCGGGGCAGGCGACTGCTTACGCACCGCACCCCGCCCGGGGCTCGCTGCCACCGGCAAAGGCAGGTCAGCAGTACCAGCA] [+] EMBL BM629067 [CCGCTGCGCAGCGCTACGCTCACACAGTGCGGCTAGAAAGCATCGAGAAGTGCAAAGCCGTAGAGAAACAGCGTTTGCCAGGCCAGGGCTACGGGGTTCCTCTGCTCTGCGGGCGGAGAAAAATCGTCGCCAAGCCAAGACGAAGAAGTGGAAGACGTCGACGAACAAGAAGCAGAACAAGTAGCGAGCAATCTCGTTTTCTTCATACACCATAAGCTCACCGTCGTCCGGAAAGTATGGCCACCAACAATTACTTTGGGTTTCCGCACGGAGCCACACAGTATGGCACGACGGCACCTGGGACCGCGTATCCGACGACACAGACGGGATACGCAGTAGCACCAGCGCCGACACCGGCTGCACCTACTTACGGAACGGCACGTCCAACCGGTTACGACCAGGCGTACCAGCCCGCTGCGACACCAGGGACATACGCAACCACGGCAACGGCCGCAACATACGACTACGGGTACGGCCGTACGACGCAGACGTACGATACTTCAAAAACGTACTACCAGCAGGCGGCCGGGGCAACGGCCGGCTACTCGACCCCGACCGGATACGACGCGGGCGGCACTGCGCCAAAGGTTATCGCCGGGTTTCAGCCGGGGCAGGCGACTGCTTACGCACCGCACCCCGCCCGGGGCTCGCTGCCACCGGCAAAGGCAGGTCAGCAGTACCAGCA] consensusID : consensus_1169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CCGCCCACGCGTCCGGAAAGCATCGAGAAGGTTTGAAACAAAATAGTTTGGAATATCGAACTTACGGGCAAAAAGTCGCTAGCTTGCATGGCCCAGCTGTAACCGATCTAACTGGCGTGCTTGGCGGTCACCACATTTCACATCCATATTCCGGTGCAGTGTAAAGCCGTAGAGAAACAGCGTTTGCCAGGCCAGGGCTACGGGGTTCCTCTGCTCTGCGGGCGGAGAAAAATCGTCGCCAAGCCAAGACGAAGAAGTGGAAGACGTCGAGGAACAAGAAGCAGAACAAGTAGCGAGCAATCTCGTTTTCTTCATACACCATAAGCTCACCGTCGTCCGGAAAGTATGGCCACCAACAATTACTTTGGGTTTCCGCACGGAGCCACACAGTATGGCACGACGGCACCTGGGACCGCGTATCCGACGACACAGACGGGATACGCAGTAGCACCAGCGCCGACACCGGCTGCACCTTCTTACGGAACGGCACGTCCAACCGGTTACGACCAGGCGTACCAGCCCGCTGCGACACCAGGGACATACGCAACCACGGCAACGGCCGCAACATACGACTACGGGTACGGCCGTACGACGC] [+] EMBL BM586295 [CCGCCCACGCGTCCGGAAAGCATCGAGAAGGTTTGAAACAAAATAGTTTGGAATATCGAACTTACGGGCAAAAAGTCGCTAGCTTGCATGGCCCAGCTGTAACCGATCTAACTGGCGTGCTTGGCGGTCACCACATTTCACATCCATATTCCGGTGCAGTGTAAAGCCGTAGAGAAACAGCGTTTGCCAGGCCAGGGCTACGGGGTTCCTCTGCTCTGCGGGCGGAGAAAAATCGTCGCCAAGCCAAGACGAAGAAGTGGAAGACGTCGAGGAACAAGAAGCAGAACAAGTAGCGAGCAATCTCGTTTTCTTCATACACCATAAGCTCACCGTCGTCCGGAAAGTATGGCCACCAACAATTACTTTGGGTTTCCGCACGGAGCCACACAGTATGGCACGACGGCACCTGGGACCGCGTATCCGACGACACAGACGGGATACGCAGTAGCACCAGCGCCGACACCGGCTGCACCTTCTTACGGAACGGCACGTCCAACCGGTTACGACCAGGCGTACCAGCCCGCTGCGACACCAGGGACATACGCAACCACGGCAACGGCCGCAACATACGACTACGGGTACGGCCGTACGACGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1169#0 ------------------------------------------------------------ consensus_1169#1 CCGCCCACGCGTCCGGAAAGCATCGAGAAGGTTTGAAACAAAATAGTTTGGAATATCGAA 60 consensus_1169#0 ------------------------------------------------CCGCTGCGCAGC 12 consensus_1169#1 CTTACGGGCAAAAAGTCGCTAGCTTGCATGGCCCAGCTGTAACCGATCTAACTGGCGTGC 120 *** ** consensus_1169#0 GCTACGCTCAC-ACAGTGCGGCTAGAAAGCATCGAGAAGTGCAAAGCCGTAGAGAAACAG 71 consensus_1169#1 TTGGCGGTCACCACATTTCACATCCATATTCCGGTGCAGTGTAAAGCCGTAGAGAAACAG 180 ** **** *** * * * * * * * **** ****************** consensus_1169#0 CGTTTGCCAGGCCAGGGCTACGGGGTTCCTCTGCTCTGCGGGCGGAGAAAAATCGTCGCC 131 consensus_1169#1 CGTTTGCCAGGCCAGGGCTACGGGGTTCCTCTGCTCTGCGGGCGGAGAAAAATCGTCGCC 240 ************************************************************ consensus_1169#0 AAGCCAAGACGAAGAAGTGGAAGACGTCGACGAACAAGAAGCAGAACAAGTAGCGAGCAA 191 consensus_1169#1 AAGCCAAGACGAAGAAGTGGAAGACGTCGAGGAACAAGAAGCAGAACAAGTAGCGAGCAA 300 ****************************** ***************************** consensus_1169#0 TCTCGTTTTCTTCATACACCATAAGCTCACCGTCGTCCGGAAAGTATGGCCACCAACAAT 251 consensus_1169#1 TCTCGTTTTCTTCATACACCATAAGCTCACCGTCGTCCGGAAAGTATGGCCACCAACAAT 360 ************************************************************ consensus_1169#0 TACTTTGGGTTTCCGCACGGAGCCACACAGTATGGCACGACGGCACCTGGGACCGCGTAT 311 consensus_1169#1 TACTTTGGGTTTCCGCACGGAGCCACACAGTATGGCACGACGGCACCTGGGACCGCGTAT 420 ************************************************************ consensus_1169#0 CCGACGACACAGACGGGATACGCAGTAGCACCAGCGCCGACACCGGCTGCACCTACTTAC 371 consensus_1169#1 CCGACGACACAGACGGGATACGCAGTAGCACCAGCGCCGACACCGGCTGCACCTTCTTAC 480 ****************************************************** ***** consensus_1169#0 GGAACGGCACGTCCAACCGGTTACGACCAGGCGTACCAGCCCGCTGCGACACCAGGGACA 431 consensus_1169#1 GGAACGGCACGTCCAACCGGTTACGACCAGGCGTACCAGCCCGCTGCGACACCAGGGACA 540 ************************************************************ consensus_1169#0 TACGCAACCACGGCAACGGCCGCAACATACGACTACGGGTACGGCCGTACGACGCAGACG 491 consensus_1169#1 TACGCAACCACGGCAACGGCCGCAACATACGACTACGGGTACGGCCGTACGACGC----- 595 ******************************************************* consensus_1169#0 TACGATACTTCAAAAACGTACTACCAGCAGGCGGCCGGGGCAACGGCCGGCTACTCGACC 551 consensus_1169#1 ------------------------------------------------------------ consensus_1169#0 CCGACCGGATACGACGCGGGCGGCACTGCGCCAAAGGTTATCGCCGGGTTTCAGCCGGGG 611 consensus_1169#1 ------------------------------------------------------------ consensus_1169#0 CAGGCGACTGCTTACGCACCGCACCCCGCCCGGGGCTCGCTGCCACCGGCAAAGGCAGGT 671 consensus_1169#1 ------------------------------------------------------------ consensus_1169#0 CAGCAGTACCAGCA 685 consensus_1169#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||