These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [AGGCAGACTCGGCACGTNNGGAGCACACAAAAGCGCCTGGCCATTTATGGAACCCGGTCGATCCGAACGAGGCACCGGATTACTATCGTGTGATAAAGGAACCTATGGACCTGCAAAAGATTGAAGGTAAAATCGACAACAAAGTGTATCAAACGCTGTCCGAGTTTATCGGCGACATGACGAAGATATTCGACAACTGCCGGTACTACAACCCGAAGGAGTCGCCGTTCTTCCGGTGCGCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAAGCACTTCCGCGAGCATCTCATCGATCGAAACGATGATGCGGCGGACGTAGTGGCGGCGGCGGTGGCCGGCGGTAGTTCACTTTCACCCGTTGCCAGNCCACCGGAGGCATCTGCCGTGACCGCGATTGCGTAGTCTAGCAGCAACTCCATTCTGTACAACTATCTGCAGAATGGTTAGCTTAT] [+] EMBL BX468546 [AGGCAGACTCGGCACGTNNGGAGCACACAAAAGCGCCTGGCCATTTATGGAACCCGGTCGATCCGAACGAGGCACCGGATTACTATCGTGTGATAAAGGAACCTATGGACCTGCAAAAGATTGAAGGTAAAATCGACAACAAAGTGTATCAAACGCTGTCCGAGTTTATCGGCGACATGACGAAGATATTCGACAACTGCCGGTACTACAACCCGAAGGAGTCGCCGTTCTTCCGGTGCGCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAAGCACTTCCGCGAGCATCTCATCGATCGAAACGATGATGCGGCGGACGTAGTGGCGGCGGCGGTGGCCGGCGGTAGTTCACTTTCACCCGTTGCCAGNCCACCGGAGGCATCTGCCGTGACCGCGATTGCGTAGTCTAGCAGCAACTCCATTCTGTACAACTATCTGCAGAATGGTTAGCTTAT] consensusID : consensus_1174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence [CAGATCGCACGAGGTGTACTGCAAAAGATTGAAGGTAAACATCGACAACAAAGTGTATCAACGCTGTCCGAGTTTATCGGCGACATGACGAAGATATTCGACAACTGCCGGTACGACAACCCGAAGGAGTCGCCGTTCTTCCGGTGCGCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAACACTTCCGCGAGCATCTC] [+] EMBL BX469331 [CAGATCGCACGAGGTGTACTGCAAAAGATTGAAGGTAAACATCGACAACAAAGTGTATCAACGCTGTCCGAGTTTATCGGCGACATGACGAAGATATTCGACAACTGCCGGTACGACAACCCGAAGGAGTCGCCGTTCTTCCGGTGCGCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAACACTTCCGCGAGCATCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1174#0 AGGCAGACTCGGCACGTNNGGAGCACACAAAAGCGCCTGGCCATTTATGGAACCCGGTCG 60 consensus_1174#1 ------------------------------------------------------------ consensus_1174#0 ATCCGAACGAGGCACCGGATTACTATCGTGTGATAAAGGAACCTATGGACCTGCAAAAGA 120 consensus_1174#1 --------------------------------CAGATCGCACGAGGTGTACTGCAAAAGA 28 * * ** * ********** consensus_1174#0 TTGAAGGTAAA-ATCGACAACAAAGTGTATCAAACGCTGTCCGAGTTTATCGGCGACATG 179 consensus_1174#1 TTGAAGGTAAACATCGACAACAAAGTGTATCAA-CGCTGTCCGAGTTTATCGGCGACATG 87 *********** ********************* ************************** consensus_1174#0 ACGAAGATATTCGACAACTGCCGGTACTACAACCCGAAGGAGTCGCCGTTCTTCCGGTGC 239 consensus_1174#1 ACGAAGATATTCGACAACTGCCGGTACGACAACCCGAAGGAGTCGCCGTTCTTCCGGTGC 147 *************************** ******************************** consensus_1174#0 GCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAAGCACTTCCGCGAGCATCTCAT 299 consensus_1174#1 GCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAA-CACTTCCGCGAGCATCTC-- 204 *************************************** ****************** consensus_1174#0 CGATCGAAACGATGATGCGGCGGACGTAGTGGCGGCGGCGGTGGCCGGCGGTAGTTCACT 359 consensus_1174#1 ------------------------------------------------------------ consensus_1174#0 TTCACCCGTTGCCAGNCCACCGGAGGCATCTGCCGTGACCGCGATTGCGTAGTCTAGCAG 419 consensus_1174#1 ------------------------------------------------------------ consensus_1174#0 CAACTCCATTCTGTACAACTATCTGCAGAATGGTTAGCTTAT 461 consensus_1174#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||