These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [CGGACTGGTAACGTTCCTGCAAATGTCTGGCATCAACGCGGTGCTGTTTTATGCTACAGATATTTTCATGGTAAATTACATACAAAATACTGTAGGATTCGCTTAATAACACGCCGGGGTCTTTCTTCAACAGAACGCTTCGGATTCGCTTAACCACGAGGTCGCTACCATTATCGTGGGTGCAATGCAGTTCTTCGGCACACTGCTAGCAGCATTCACCGTCGATCGAGTCGGACGCCGCTGGCTGTTAATGATTTCGGCCATCATAATGTGCGTATCGCATGTTGTTCTGGGCGTGTACTTTCACCTACTGCAAAACAGTCCAGCACAGGTGGAAAATCTCGAATGGTTACCCGTGTTTGCGCTGTCCCTGTTTGTGACGATGTTTTCGATCGGCTTTGGGCCCGTACCGTGGATCATGATCGGTGAAGTGTTTGCGATCGACGTGAAAGATCTCGCCAGCTCGCTGGCAACGTTCACCAGCTACGCACTGTCCTTTATGATGACGAAAACGTTTAATCCGCTTCGGAATGGGCTANGCGANGCTGGCACATTTTGGCTGGTTGGTGGATTCTGTATGCTTGGTGNCATTTT] [+] EMBL BX627987 [CGGACTGGTAACGTTCCTGCAAATGTCTGGCATCAACGCGGTGCTGTTTTATGCTACAGATATTTTCATGGTAAATTACATACAAAATACTGTAGGATTCGCTTAATAACACGCCGGGGTCTTTCTTCAACAGAACGCTTCGGATTCGCTTAACCACGAGGTCGCTACCATTATCGTGGGTGCAATGCAGTTCTTCGGCACACTGCTAGCAGCATTCACCGTCGATCGAGTCGGACGCCGCTGGCTGTTAATGATTTCGGCCATCATAATGTGCGTATCGCATGTTGTTCTGGGCGTGTACTTTCACCTACTGCAAAACAGTCCAGCACAGGTGGAAAATCTCGAATGGTTACCCGTGTTTGCGCTGTCCCTGTTTGTGACGATGTTTTCGATCGGCTTTGGGCCCGTACCGTGGATCATGATCGGTGAAGTGTTTGCGATCGACGTGAAAGATCTCGCCAGCTCGCTGGCAACGTTCACCAGCTACGCACTGTCCTTTATGATGACGAAAACGTTTAATCCGCTTCGGAATGGGCTANGCGANGCTGGCACATTTTGGCTGGTTGGTGGATTCTGTATGCTTGGTGNCATTTT] consensusID : consensus_1187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [CCGCCCACGCGTCCGCCCGTACCGTGGATCATGATCGGTGAAGTGTTTGCGATCGACGTGAAAGATCTCGCCAGCTCGCTGGCAACGTTCACCAGCTACGCACTGTCCTTTATGATGACGAAAACGTTTAATCCGCTTCGGAATGGGCTAGGCGAGGCTGGCACATTTTGGCTGTTTGGTGGATTCTGTATGCTTGGTGCCATTTTCGTGTTTCTATTCGTGCCGGAAACAAAGGGTAAAACATTCGATCAGATACAAAAACGGTTAGCAAGCAGCAAAGTGTACTTCAGGGCGGAAAAGTAAGTGTTGTTGCGTGGGTAATTTTTATTTGAATTGCTTTTAGTATAATAGTGGACAACAAACCAACAATTTCGATTCTTTTTTGAGGCCCCCAACTAGTAAATCTAGATCTAGACTCAAGATAGTAAATCTAACTATCTCGTAGCTGATGTCCTAATATGACCGTATCGAAGGTACCAAAGGGGCAAAGAATTTATTGCAATTCGGTGAAAATCATTTACTCGATTTCATTAGTAGTACATATATGTAGTCACCCGATATTAAAAAGAATAA] [+] EMBL BM612909 [CCGCCCACGCGTCCGCCCGTACCGTGGATCATGATCGGTGAAGTGTTTGCGATCGACGTGAAAGATCTCGCCAGCTCGCTGGCAACGTTCACCAGCTACGCACTGTCCTTTATGATGACGAAAACGTTTAATCCGCTTCGGAATGGGCTAGGCGAGGCTGGCACATTTTGGCTGTTTGGTGGATTCTGTATGCTTGGTGCCATTTTCGTGTTTCTATTCGTGCCGGAAACAAAGGGTAAAACATTCGATCAGATACAAAAACGGTTAGCAAGCAGCAAAGTGTACTTCAGGGCGGAAAAGTAAGTGTTGTTGCGTGGGTAATTTTTATTTGAATTGCTTTTAGTATAATAGTGGACAACAAACCAACAATTTCGATTCTTTTTTGAGGCCCCCAACTAGTAAATCTAGATCTAGACTCAAGATAGTAAATCTAACTATCTCGTAGCTGATGTCCTAATATGACCGTATCGAAGGTACCAAAGGGGCAAAGAATTTATTGCAATTCGGTGAAAATCATTTACTCGATTTCATTAGTAGTACATATATGTAGTCACCCGATATTAAAAAGAATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1187#0 CGGACTGGTAACGTTCCTGCAAATGTCTGGCATCAACG-CGGTGCTGTTTTATGCTACAG 59 consensus_1187#1 ----CCGCCCACGCGTCCGCCCGTACCGTGGATCATGATCGGTGAAGTGTT-TGCGATCG 55 * * *** * ** * * * **** ***** ** ** *** * * consensus_1187#0 ATATTTTCATGGTAAATTACATACAAAATACTG-TAGGATTCGCTTAATAACACGCCGGG 118 consensus_1187#1 A------CGTGAAAGATCTCGC-CAGCTCGCTGGCAACGTTCACC-AGCTACGCACTGTC 107 * * ** * ** * ** *** * *** * * ** * * * consensus_1187#0 GTCTTTCTTCAACAGAACGCTTCGGATTCGCTTAACCACGAGGTCGCTACCATTATCGTG 178 consensus_1187#1 CTTTATGATGACGAAAACGTTT--AATCCGCTTCGGAATGGGCTAGGCGAGGCTGGCACA 165 * * * * * * **** ** ** ***** * * * * * * * consensus_1187#0 GGT--GCAATGCAGTTC-TTCGGCACACTGCTAGCAGCATTCACCGTCGATCGAGTCG-G 234 consensus_1187#1 TTTTGGCTGTTTGGTGGATTCTGTATGCT--TGGTGCCATTT-TCGTGTTTCTATTCGTG 222 * ** * ** *** * * ** * * **** *** ** * *** * consensus_1187#0 ACGCCGCTGGCTGTTAATGATTTCGGCCATCATAATGTGCGTATCGCATGTTGTTCTGGG 294 consensus_1187#1 CCGGAAACAAAGGGTAAAACATTCGATCAGATACAAAAACGGTTAGCAAGCAGC----AA 278 ** * *** **** ** * ** * *** * * consensus_1187#0 CGTGTACTTTCACCTACTGCAAAACAGTCCAGCACAGGTGGAAAATCTCGAATGGTTACC 354 consensus_1187#1 AGTGTACTTCAG--GGCGGAAAAGTAAGTGTTGTTGCGTGGGTAATTTTTATTTGAAT-- 334 ******** * * *** * **** *** * * * * consensus_1187#0 CGTGTTTGCGCTGTCCCTGTTTGTGACGATGTTTTCGATCGGCTTTGGGCCCGTACCGTG 414 consensus_1187#1 --TGCTTTTAGTATAATAGTGGACAACAAA-----CCAACAATTTCGATTCTTTTTTGAG 387 ** ** * * ** ** * * * * ** * * * * * consensus_1187#0 GATCATGATCGGTGAAGT---GTTTGCGATCGACGTGAAAGATCTCGCCAGCTCGCTGGC 471 consensus_1187#1 GCCCCCAACTAGTAAATCTAGATCTAGACTCAAGATAGTAAATCTAACTATCTCGTAGCT 447 * * * ** ** * * ** * * * **** * * **** * consensus_1187#0 AACGTTCACCAGCTACGCACTGTCCTTTATGATGACGAAAACGTTTAATCCGCTTCGGAA 531 consensus_1187#1 GATGT---CCTAATATG-ACCGTA-TCGAAGGTACCAAAGGGGCAAAGAATTTATTGCAA 502 * ** ** ** * ** ** * * * * * ** * * * * ** consensus_1187#0 TGGGCTANGCGANGCTGGCACATTTTGGCTGGTTGGTGGATTCTGTA--TGCTTGGTGNC 589 consensus_1187#1 TTCGGTGAAAATCATTTACTCGATTTCATTAGTAGTACATATATGTAGTCACCCGATATT 562 * * * * * * *** * ** * * **** * * * consensus_1187#0 ATTTT------ 594 consensus_1187#1 AAAAAGAATAA 573 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||