cluster # 119

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Anopheles gambiae
cluster # 119 cluster # 119 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_119#0 length = 791 sequences # 1

consensus_119#1 length = 619 sequences # 1

consensusID : consensus_119#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 791
fasta sequence

                              [TGCAGAATCGCCCGAGGCTAATTTCAAAGGCGAATCAAAAAGGCGGGAGAATCGAAAATAGGGAATAATAGTGAGATAGTTTACTTGAGCTTCTTTTTTAAACGGACTGATTGGCACTGATTAATCCTTAGCGAAATATACATTGTATNTGGGTTAGCTAAAGGGACCACGCTNTGTGGGGAGTGCTAACAATTTCCTGGCACGTTTTGACACAGCGCGCAAAGTGCCAGCAGTCTGCTATATGAATTGTGTGTNNACNTTATTTATTTAACCGGGTAGTTGGACAGGAAACCNAGNGGCANCAGCGACCCAAACAGAAGCGATAGGTATTTTAAGGAGTGGTGGTTTAAGAATNGCGGCGGGTAAAAACCCCNTAAACGACGGGGTTCCCANCNGTTGGTAGTTTCCCACGGAGTCTCGAGACCGGTTTCCGANAACACGACCATGAAGACGGAGGACAGCAAGAGGAAGCTANAAGANGGTTGGAANACCCGGGTTTTGGGCAGNTTTACGGCCAGTGGTTTATCCGGACGGACAACCGGTTCTATGGTATNCCACGGCCGGGTTTCTGGCTTTTAGTANGNGTTTATTAGGGTATACCGTTTTTAGNNGTCATCATCAGAGGACTTTTGTCTTCCCCTATGCCACACANTGGGNTCCTCGACAAGTTTGTTACGGGGGCGGCCCNTATTNGTAAGNGGAAGTTTGGTTNTCACGACGTTCAGCCGGAACATGAATCGGGAGACAATTTAAGGTCCNTTCATCCATTGNAAGCCATCTTNTNACTATTA]

[+] EMBL AL934981             [TGCAGAATCGCCCGAGGCTAATTTCAAAGGCGAATCAAAAAGGCGGGAGAATCGAAAATAGGGAATAATAGTGAGATAGTTTACTTGAGCTTCTTTTTTAAACGGACTGATTGGCACTGATTAATCCTTAGCGAAATATACATTGTATNTGGGTTAGCTAAAGGGACCACGCTNTGTGGGGAGTGCTAACAATTTCCTGGCACGTTTTGACACAGCGCGCAAAGTGCCAGCAGTCTGCTATATGAATTGTGTGTNNACNTTATTTATTTAACCGGGTAGTTGGACAGGAAACCNAGNGGCANCAGCGACCCAAACAGAAGCGATAGGTATTTTAAGGAGTGGTGGTTTAAGAATNGCGGCGGGTAAAAACCCCNTAAACGACGGGGTTCCCANCNGTTGGTAGTTTCCCACGGAGTCTCGAGACCGGTTTCCGANAACACGACCATGAAGACGGAGGACAGCAAGAGGAAGCTANAAGANGGTTGGAANACCCGGGTTTTGGGCAGNTTTACGGCCAGTGGTTTATCCGGACGGACAACCGGTTCTATGGTATNCCACGGCCGGGTTTCTGGCTTTTAGTANGNGTTTATTAGGGTATACCGTTTTTAGNNGTCATCATCAGAGGACTTTTGTCTTCCCCTATGCCACACANTGGGNTCCTCGACAAGTTTGTTACGGGGGCGGCCCNTATTNGTAAGNGGAAGTTTGGTTNTCACGACGTTCAGCCGGAACATGAATCGGGAGACAATTTAAGGTCCNTTCATCCATTGNAAGCCATCTTNTNACTATTA]




>consensus_119#0
TGCAGAATCGCCCGAGGCTAATTTCAAAGGCGAATCAAAAAGGCGGGAGAATCGAAAATA
GGGAATAATAGTGAGATAGTTTACTTGAGCTTCTTTTTTAAACGGACTGATTGGCACTGA
TTAATCCTTAGCGAAATATACATTGTATNTGGGTTAGCTAAAGGGACCACGCTNTGTGGG
GAGTGCTAACAATTTCCTGGCACGTTTTGACACAGCGCGCAAAGTGCCAGCAGTCTGCTA
TATGAATTGTGTGTNNACNTTATTTATTTAACCGGGTAGTTGGACAGGAAACCNAGNGGC
ANCAGCGACCCAAACAGAAGCGATAGGTATTTTAAGGAGTGGTGGTTTAAGAATNGCGGC
GGGTAAAAACCCCNTAAACGACGGGGTTCCCANCNGTTGGTAGTTTCCCACGGAGTCTCG
AGACCGGTTTCCGANAACACGACCATGAAGACGGAGGACAGCAAGAGGAAGCTANAAGAN
GGTTGGAANACCCGGGTTTTGGGCAGNTTTACGGCCAGTGGTTTATCCGGACGGACAACC
GGTTCTATGGTATNCCACGGCCGGGTTTCTGGCTTTTAGTANGNGTTTATTAGGGTATAC
CGTTTTTAGNNGTCATCATCAGAGGACTTTTGTCTTCCCCTATGCCACACANTGGGNTCC
TCGACAAGTTTGTTACGGGGGCGGCCCNTATTNGTAAGNGGAAGTTTGGTTNTCACGACG
TTCAGCCGGAACATGAATCGGGAGACAATTTAAGGTCCNTTCATCCATTGNAAGCCATCT
TNTNACTATTA

consensusID : consensus_119#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence

                              [CCGGAAATGTAACGCCTAGAAACGAACTGTAACAAGTCTGTTAGCTCTCGGCCTCGGCCTACTTGCTGGAAGGGTAGCAATGCAATGCGCCTAAAGCTATGCAATATGTTAGAATCTGTGCTGTTTGGCACATAGTTTAAAACGCTGTTCAAAACTAGTTTTTCATGATTTTAGTAGTTCAAAGGTATGATTAAAATGGAATGTAACGACAACAAATTGCATACATTTAGGCGCTTTGCCACGTGGAAGGCATGCAATTGCAACAGAGAGCGACGCAATCGTTCTGTACACATTAGCTTCACCATAGTAAGACACACGCACATAAACAAACACAGAAACAAACACTATTTAAATGTAGCACAGATGTATATGTATGTGTAACAAATTTGAAAGGCGAATCAAAAAAGGCGGGAAGAATCGAAAATAGGGAATAATAGTGAGATGTTTACTGAGCTTCTTTTTTTAACTGACTGATGGGCACTGATTAATCATTAGCGAAATATACAAGTATGGGGTTAGGAAAGGGGGAACGAGTGGGGGGAAGGGGAGTGCTAACAATTTCCTGGCACGTTTGACAGAGCGCGTACGGCCAGCAGTCTGCTATACAAATGTGTGTAAA]

[+] EMBL BM598402             [CCGGAAATGTAACGCCTAGAAACGAACTGTAACAAGTCTGTTAGCTCTCGGCCTCGGCCTACTTGCTGGAAGGGTAGCAATGCAATGCGCCTAAAGCTATGCAATATGTTAGAATCTGTGCTGTTTGGCACATAGTTTAAAACGCTGTTCAAAACTAGTTTTTCATGATTTTAGTAGTTCAAAGGTATGATTAAAATGGAATGTAACGACAACAAATTGCATACATTTAGGCGCTTTGCCACGTGGAAGGCATGCAATTGCAACAGAGAGCGACGCAATCGTTCTGTACACATTAGCTTCACCATAGTAAGACACACGCACATAAACAAACACAGAAACAAACACTATTTAAATGTAGCACAGATGTATATGTATGTGTAACAAATTTGAAAGGCGAATCAAAAAAGGCGGGAAGAATCGAAAATAGGGAATAATAGTGAGATGTTTACTGAGCTTCTTTTTTTAACTGACTGATGGGCACTGATTAATCATTAGCGAAATATACAAGTATGGGGTTAGGAAAGGGGGAACGAGTGGGGGGAAGGGGAGTGCTAACAATTTCCTGGCACGTTTGACAGAGCGCGTACGGCCAGCAGTCTGCTATACAAATGTGTGTAAA]




>consensus_119#1
CCGGAAATGTAACGCCTAGAAACGAACTGTAACAAGTCTGTTAGCTCTCGGCCTCGGCCT
ACTTGCTGGAAGGGTAGCAATGCAATGCGCCTAAAGCTATGCAATATGTTAGAATCTGTG
CTGTTTGGCACATAGTTTAAAACGCTGTTCAAAACTAGTTTTTCATGATTTTAGTAGTTC
AAAGGTATGATTAAAATGGAATGTAACGACAACAAATTGCATACATTTAGGCGCTTTGCC
ACGTGGAAGGCATGCAATTGCAACAGAGAGCGACGCAATCGTTCTGTACACATTAGCTTC
ACCATAGTAAGACACACGCACATAAACAAACACAGAAACAAACACTATTTAAATGTAGCA
CAGATGTATATGTATGTGTAACAAATTTGAAAGGCGAATCAAAAAAGGCGGGAAGAATCG
AAAATAGGGAATAATAGTGAGATGTTTACTGAGCTTCTTTTTTTAACTGACTGATGGGCA
CTGATTAATCATTAGCGAAATATACAAGTATGGGGTTAGGAAAGGGGGAACGAGTGGGGG
GAAGGGGAGTGCTAACAATTTCCTGGCACGTTTGACAGAGCGCGTACGGCCAGCAGTCTG
CTATACAAATGTGTGTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_119#0      TGCAGAATCGCCCGAGGCTAATTTCAAAGGCGAATCAAAAAGGCGGGAGAATCGAAAATA 60
consensus_119#1      ----------------------------------CCGGAAATGTA--ACGCCTAGAAACG 24
                                                        *  *** *    *       ***  

consensus_119#0      GGGAATAATA-GTGAGATAGTTTACTTGAGCTTCTTTTTTAAACGGACTGATTGGCACTG 119
consensus_119#1      AACTGTAACAAGTCTGTTAGCT--CTCGGCCTCGGCCTACTTGCTGGAAGGGTAGCAATG 82
                          *** * **  * *** *  ** *  **     *     * *   *  * *** **

consensus_119#0      ATTAATCCTTAGCGAAATATACATTGTATNTGGGTTAG--CTAAAGGGACCACGCTNTGT 177
consensus_119#1      --CAATGCGCCTAAAGCTATGCAATATGTTAGAATCTGTGCTGTTTGGCACATAGTTTAA 140
                        *** *      *  *** ** * * *  *  *  *  **    **  **   * *  

consensus_119#0      GGGGAGTGCTAACAATTTCCTGGCACGTTTTGACACAGCGCGCAAAGTGCCAGCAGTCTG 237
consensus_119#1      AACGCTGTTCAAAACTAGTTTTTCATGATTTTA-GTAGTTCA-AAGGTATGATTAAAATG 198
                        *      ** * *    *  ** * *** *   **  *  ** **   *  *   **

consensus_119#0      CTATATGAATTGTGTGTNNACNTTATTTATTTAACCGGGTAGTTGGACAGGAAACCN--A 295
consensus_119#1      GAATGTAA--CGACAACAAATTGCATACATTTAGGCGCTTTGCCACGTGGAAGGCATGCA 256
                       ** * *   *       *    **  *****  **  * *       * *  *    *

consensus_119#0      GNGGCANCAGCGACCCAAACAGAAGCGATAGGTATTTTAAGGAGTGGTGGTTTAAGAATN 355
consensus_119#1      ATTGCAACAGAGAGCGACGCAATCGTTCTGTACACATTA-GCTTCACCATAGTAAGACAC 315
                        *** *** ** * *  **   *   *    *  *** *           *****   

consensus_119#0      GCGGCGGGTAAAAACCCCNTAAACGACGGGGTTCCCANCNGTTGGTAGTTTCCCACGGA- 414
consensus_119#1      ACGCACATAAACAAACACAGAAACAAACACTATTTAAATGTAGCACAGATGTATATGTAT 375
                      **      ** ** * *  **** *      *   *         ** *    * * * 

consensus_119#0      --GTCTCGAGACCGGTTTCCGANAACACGACCATGAAGACGGAGGACAGCAAGAGGAAGC 472
consensus_119#1      GTGTAACAAATTTGAAAGGCGAATCAAAAAAGGCGGGAAGAATCGAAAATAGGGAATAAT 435
                       **  * *    *     ***    *  *    *   *     ** *  * *    *  

consensus_119#0      TANAAGANGGTTGGAANACCCGGGTTTTGGGCAGNTTTACGGCCAGTGGTTTATCCGGAC 532
consensus_119#1      AGTGAGATGTTTACTGAGCTTCTTTTTTTAACTGACTGATGGGCACTGATTAATCATTAG 495
                         *** * **      *     ****   * *  * * ** ** ** ** ***   * 

consensus_119#0      GGACAACCGGTTCTATGGTATNCCACGGCCGGGTTTCTGGCTTTTAGTANGNGTTTATTA 592
consensus_119#1      CGAAATATACAAGTATGGGGTT--AGGAAAGGGGGAACGAGTGGGGGGAAGGGG-----A 548
                      ** *        *****  *   * *   ***     *  *    * * * *      *

consensus_119#0      GGGTATACCGTTTTTAGNNGTCATCATCAGAGGACTTTTGTCTTCCCCTATGCCACACAN 652
consensus_119#1      GTGCTAACAATTTCCTGGCACGTTTGACAGAGCGCGTACGGCCAGCAGTCTGCTATACAA 608
                     * *   **  ***   *      *   *****  * *  * *   *  * *** * *** 

consensus_119#0      TGGGNTCCTCGACAAGTTTGTTACGGGGGCGGCCCNTATTNGTAAGNGGAAGTTTGGTTN 712
consensus_119#1      ATGTGTGTAAA------------------------------------------------- 619
                       *  *                                                      

consensus_119#0      TCACGACGTTCAGCCGGAACATGAATCGGGAGACAATTTAAGGTCCNTTCATCCATTGNA 772
consensus_119#1      ------------------------------------------------------------
                                                                                 

consensus_119#0      AGCCATCTTNTNACTATTA 791
consensus_119#1      -------------------