These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [AATTTACAATACACAATACTTTATTACACGATCAGCCCTTGTGTTCCCGACGGTGTCCCACGAGCGTCTGGCGCTCTCTCGTCTGCTAACCGCTCATCAGTCACTCAGTGGCTGCATACGTTCTTAACGCCGAATAAAGGGAGCCTTCCACTTCGTGACCACAACACGAACCATGTGCTCGAAGTAGGAAAAGTTATTGTTTTGCTTCGCCGTGTTGGTCAACAGGTCCATCAGCTCAGTCAGTGAAGTTCCAGCTCCAATAGTAAGAGAGCTTCCAACGGAACTGGTCCGCAGCTCTTGGACAGCGTTGATATCGATGAAGACTTGAATTCCGTCGCTTCGACGGTACACACCGTGGGCAGTGTTACCTCCAATGAGCGTGTACGGCTTATCTCCAAATGCTCTCGAAGATGGCAAAGATGTCGCTCACGTTGTACACCTTGTGCCACTCCTTTTGCTCCTCGAAGCTCAGATGGAGGCCTTTGTTGGGGTTAGTTTTTCCTGCCGCGGCACACTTGCCAGCACAGGCCGATCCGGTCTTGGGACAAATCTTGGTAAAATCCTCAATATCCTGGCACTTTGCCTTGAGCTTGGGATCCGCCTCGACGGCCCGCGCCTTGAAG] [+] EMBL CNS09LDX [AATTTACAATACACAATACTTTATTACACGATCAGCCCTTGTGTTCCCGACGGTGTCCCACGAGCGTCTGGCGCTCTCTCGTCTGCTAACCGCTCATCAGTCACTCAGTGGCTGCATACGTTCTTAACGCCGAATAAAGGGAGCCTTCCACTTCGTGACCACAACACGAACCATGTGCTCGAAGTAGGAAAAGTTATTGTTTTGCTTCGCCGTGTTGGTCAACAGGTCCATCAGCTCAGTCAGTGAAGTTCCAGCTCCAATAGTAAGAGAGCTTCCAACGGAACTGGTCCGCAGCTCTTGGACAGCGTTGATATCGATGAAGACTTGAATTCCGTCGCTTCGACGGTACACACCGTGGGCAGTGTTACCTCCAATGAGCGTGTACGGCTTATCTCCAAATGCTCTCGAAGATGGCAAAGATGTCGCTCACGTTGTACACCTTGTGCCACTCCTTTTGCTCCTCGAAGCTCAGATGGAGGCCTTTGTTGGGGTTAGTTTTTCCTGCCGCGGCACACTTGCCAGCACAGGCCGATCCGGTCTTGGGACAAATCTTGGTAAAATCCTCAATATCCTGGCACTTTGCCTTGAGCTTGGGATCCGCCTCGACGGCCCGCGCCTTGAAG] consensusID : consensus_1190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [TTTTTTTTAATAAACAATACACAATACTTTATTACACGATCAGCCCTTGTGTTCCCGACGGTGTCCCACGAGCGTCTGGCGCTCTCTCGTCTGCTAACCGCTCATCAGTCACTCAGTGGCTGCATACGTTCTTAACGCCGAATAAAGGGAGCCTTCCACTTCGTGACCACAACATCTCCCCCTTTTTAATAGCGTAGGTACGGATCGAACCGACGTGGAGCTCTTCTAGACCGAGAAGAGCGACGTGGTGAACGTTGATGCTGAGGAATGGATCGATGTGGGGGAAGAGATGGCGGCTCAGTTGGAGTCGCCACTGGCGGTGCAAGTTGTGTTGGATACACATCTGGGAGCA] [+] EMBL AGA283835 [TTTTTTTTAATAAACAATACACAATACTTTATTACACGATCAGCCCTTGTGTTCCCGACGGTGTCCCACGAGCGTCTGGCGCTCTCTCGTCTGCTAACCGCTCATCAGTCACTCAGTGGCTGCATACGTTCTTAACGCCGAATAAAGGGAGCCTTCCACTTCGTGACCACAACATCTCCCCCTTTTTAATAGCGTAGGTACGGATCGAACCGACGTGGAGCTCTTCTAGACCGAGAAGAGCGACGTGGTGAACGTTGATGCTGAGGAATGGATCGATGTGGGGGAAGAGATGGCGGCTCAGTTGGAGTCGCCACTGGCGGTGCAAGTTGTGTTGGATACACATCTGGGAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1190#0 --------AATTTACAATACACAATACTTTATTACACGATCAGCCCTTGTGTTCCCGACG 52 consensus_1190#1 TTTTTTTTAATAAACAATACACAATACTTTATTACACGATCAGCCCTTGTGTTCCCGACG 60 *** *********************************************** consensus_1190#0 GTGTCCCACGAGCGTCTGGCGCTCTCTCGTCTGCTAACCGCTCATCAGTCACTCAGTGGC 112 consensus_1190#1 GTGTCCCACGAGCGTCTGGCGCTCTCTCGTCTGCTAACCGCTCATCAGTCACTCAGTGGC 120 ************************************************************ consensus_1190#0 TGCATACGTTCTTAACGCCGAATAAAGGGAGCCTTCCACTTCGTGACCACAACACGAACC 172 consensus_1190#1 TGCATACGTTCTTAACGCCGAATAAAGGGAGCCTTCCACTTCGTGACCACAACATCTCCC 180 ****************************************************** ** consensus_1190#0 ATGTGCTCGAAGTAGGAAAAGTTATTGTTTTGCTTCGCCGTGTTGGTCAAC-AGGTCCAT 231 consensus_1190#1 CCTTTTT---AATAGCGTAGGT--ACGGATCGAACCGACGTGGAGCTCTTCTAGACCGAG 235 * * * *** * ** * * * ** **** * ** * ** * * consensus_1190#0 CAGCTCAGTCAGTGAAGTTCCAGCTCCAATAGTAAGAGAGCTTCCAACGGAACTGGTCCG 291 consensus_1190#1 AAGAGCGACGTGGTGAACGTTGATGCTGA--GGAATGGATCGATGTGGGGGAAGAGATGG 293 ** * * * * * * ** ** * ** * * * consensus_1190#0 CAGCTCTTGGACAGCGTTGATATCGATGAAGACTTGAATTCCGTCGCTTCGACGGTACAC 351 consensus_1190#1 CGGCTC--AGTTGGAGTCGCCACTGGCGGTG---CAAGTTGTGTTG-------GATACAC 341 * **** * * ** * * * * * * ** ** * * ***** consensus_1190#0 ACC-GTGGGCAGTGTTACCTCCAATGAGCGTGTACGGCTTATCTCCAAATGCTCTCGAAG 410 consensus_1190#1 ATCTGGGAGCA------------------------------------------------- 352 * * * * *** consensus_1190#0 ATGGCAAAGATGTCGCTCACGTTGTACACCTTGTGCCACTCCTTTTGCTCCTCGAAGCTC 470 consensus_1190#1 ------------------------------------------------------------ consensus_1190#0 AGATGGAGGCCTTTGTTGGGGTTAGTTTTTCCTGCCGCGGCACACTTGCCAGCACAGGCC 530 consensus_1190#1 ------------------------------------------------------------ consensus_1190#0 GATCCGGTCTTGGGACAAATCTTGGTAAAATCCTCAATATCCTGGCACTTTGCCTTGAGC 590 consensus_1190#1 ------------------------------------------------------------ consensus_1190#0 TTGGGATCCGCCTCGACGGCCCGCGCCTTGAAG 623 consensus_1190#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||