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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence
[AGAATCGGCCGAGGGTTAGCACCGTTTTGTTGAGACATGAAAACATCTTGGGGTACGTTGGTTCAGACATGACTTCTAGAAATTCTTGTACGCAGTTATGGCTTATAACGCACTATTATCCTCAAGGATCTCTTTTTGATTACTTAAATCGTACTCGCAAGTTTCCACACATCAAATGATAACCATTTGCCTCTCTATTGCCAATGGGATGGTACATTTACACACTGAAATTTTTGGAACTGAGGGTAAACCGGCTATCGCGCATCGTGATTTAAAGACAAAAAATATTCTAATTCGAGCAAATGGTACATGTGTCATTGCGGATTTTGGCCTGGCCGTAATGCACAGTCAAACAACTAATAAAAATTGATATAGGTAACACCGCTCGTGTCGGAACAAAGCGCTATATGGCTCCGGAAGTTCTAGACGAAAGTATCAGCATGGAATGTTTCGATGCCTTAAGGAAAGCTGACATTTTACGCAATTGGTTTAAATATTTTGGGAAGTATGTCGCCGCACTATCTCTTGTGGCATTGCAGAAGAGTATAAAGTTCCATACTTCGACTACGTTTCAGTCAGATCCTAGTTTTGAAGAAATGCGCAAAGTTGTGTGTGTTGACAATTATAGAGCCATCCGTACAAAATCGTTGGACATCTGATCCGGTTTCTCGCTAGTATGTCAAAGCTGATGCGTGAATGTTGGGCATATGAACCCCAAATGTTCGATTAACAGCGCTAAGAATTAAAAAACTTTAACTTAAACTGGCTANCTCTGA]
[+] EMBL BX468558 [AGAATCGGCCGAGGGTTAGCACCGTTTTGTTGAGACATGAAAACATCTTGGGGTACGTTGGTTCAGACATGACTTCTAGAAATTCTTGTACGCAGTTATGGCTTATAACGCACTATTATCCTCAAGGATCTCTTTTTGATTACTTAAATCGTACTCGCAAGTTTCCACACATCAAATGATAACCATTTGCCTCTCTATTGCCAATGGGATGGTACATTTACACACTGAAATTTTTGGAACTGAGGGTAAACCGGCTATCGCGCATCGTGATTTAAAGACAAAAAATATTCTAATTCGAGCAAATGGTACATGTGTCATTGCGGATTTTGGCCTGGCCGTAATGCACAGTCAAACAACTAATAAAAATTGATATAGGTAACACCGCTCGTGTCGGAACAAAGCGCTATATGGCTCCGGAAGTTCTAGACGAAAGTATCAGCATGGAATGTTTCGATGCCTTAAGGAAAGCTGACATTTTACGCAATTGGTTTAAATATTTTGGGAAGTATGTCGCCGCACTATCTCTTGTGGCATTGCAGAAGAGTATAAAGTTCCATACTTCGACTACGTTTCAGTCAGATCCTAGTTTTGAAGAAATGCGCAAAGTTGTGTGTGTTGACAATTATAGAGCCATCCGTACAAAATCGTTGGACATCTGATCCGGTTTCTCGCTAGTATGTCAAAGCTGATGCGTGAATGTTGGGCATATGAACCCCAAATGTTCGATTAACAGCGCTAAGAATTAAAAAACTTTAACTTAAACTGGCTANCTCTGA]
consensusID : consensus_1196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence
[GGCCAAGAATCGGCACGNTGGATCGCGCATCGTGATTTAAANNACAAAAAATATTCTAATTCGAGCAAATGGTACATGTGTCATTGCGGATTTTGGCCTGGCCGTAATGCACAGTCAAACAACTAATAAAATTGATATAGGTAACACCGCTCGTGTCGGAACAAAGCGCTATATGGCTCCGGAAGTTCTAGACGAAAGTATCAGCATGGAATGTTTCGATGCCTTAAGGAAAGCTGACATTTACGCAATTGGTTTAATATTTTGGGAAGTATGTCGCCGCACTATCTCTTGTGGCATTGCAGAAGAGTATACAAGTTCCATACTTCGACTACGTTTCATCAGATCCTAGTTTTGAAGGAAATGCGCAAAGTTGTGTGTGTTGACACATTATAGACCATCCGTACAAAATCGTTGGACATCTGGATCCGTTTCTCGCTAGTATGTCAAAGCTGATGCGTGAATGTAGGCATATGAACCCCAATGTTCGATTACCAGACGCTAGAATTAACAAAACTTACTTAAA]
[+] EMBL BX468886 [GGCCAAGAATCGGCACGNTGGATCGCGCATCGTGATTTAAANNACAAAAAATATTCTAATTCGAGCAAATGGTACATGTGTCATTGCGGATTTTGGCCTGGCCGTAATGCACAGTCAAACAACTAATAAAATTGATATAGGTAACACCGCTCGTGTCGGAACAAAGCGCTATATGGCTCCGGAAGTTCTAGACGAAAGTATCAGCATGGAATGTTTCGATGCCTTAAGGAAAGCTGACATTTACGCAATTGGTTTAATATTTTGGGAAGTATGTCGCCGCACTATCTCTTGTGGCATTGCAGAAGAGTATACAAGTTCCATACTTCGACTACGTTTCATCAGATCCTAGTTTTGAAGGAAATGCGCAAAGTTGTGTGTGTTGACACATTATAGACCATCCGTACAAAATCGTTGGACATCTGGATCCGTTTCTCGCTAGTATGTCAAAGCTGATGCGTGAATGTAGGCATATGAACCCCAATGTTCGATTACCAGACGCTAGAATTAACAAAACTTACTTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1196#0 AGAATCGGCCGAGGGTTAGCACCGTTTTGTTGAGACATGAAAACATCTTGGGGTACGTTG 60
consensus_1196#1 ------------------------------------------------------------
consensus_1196#0 GTTCAGACATGACTTCTAGAAATTCTTGTACGCAGTTATGGCTTATAACGCACTATTATC 120
consensus_1196#1 ------------------------------------------------------------
consensus_1196#0 CTCAAGGATCTCTTTTTGATTACTTAAATCGTACTCGCAAGTTTCCACACATCAAATGAT 180
consensus_1196#1 ------------------------------------------------------------
consensus_1196#0 AACCATTTGCCTCTCTATTGCCAATGGGATGGTACATTTACACACTGAAATTTTTGGAAC 240
consensus_1196#1 ---------------------------------------------------------GGC 3
*
consensus_1196#0 TGAGGGTAAACCGGCT--ATCGCGCATCGTGATTTAAAGA-CAAAAAATATTCTAATTCG 297
consensus_1196#1 CAAGAATCGGCACGNTGGATCGCGCATCGTGATTTAAANNACAAAAAATATTCTAATTCG 63
** * * * * ******************** *******************
consensus_1196#0 AGCAAATGGTACATGTGTCATTGCGGATTTTGGCCTGGCCGTAATGCACAGTCAAACAAC 357
consensus_1196#1 AGCAAATGGTACATGTGTCATTGCGGATTTTGGCCTGGCCGTAATGCACAGTCAAACAAC 123
************************************************************
consensus_1196#0 TAATAAAAATTGATATAGGTAACACCGCTCGTGTCGGAACAAAGCGCTATATGGCTCCGG 417
consensus_1196#1 TAATAAAA-TTGATATAGGTAACACCGCTCGTGTCGGAACAAAGCGCTATATGGCTCCGG 182
******** ***************************************************
consensus_1196#0 AAGTTCTAGACGAAAGTATCAGCATGGAATGTTTCGATGCCTTAAGGAAAGCTGACATTT 477
consensus_1196#1 AAGTTCTAGACGAAAGTATCAGCATGGAATGTTTCGATGCCTTAAGGAAAGCTGACATTT 242
************************************************************
consensus_1196#0 TACGCAATTGGTTTAAATATTTTGGGAAGTATGTCGCCGCACTATCTCTTGTGGCATTGC 537
consensus_1196#1 -ACGCAATTGGTTTAA-TATTTTGGGAAGTATGTCGCCGCACTATCTCTTGTGGCATTGC 300
*************** *******************************************
consensus_1196#0 AGAAGAGTATA-AAGTTCCATACTTCGACTACGTTTCAGTCAGATCCTAGTTTTGAAG-A 595
consensus_1196#1 AGAAGAGTATACAAGTTCCATACTTCGACTACGTTTCA-TCAGATCCTAGTTTTGAAGGA 359
*********** ************************** ******************* *
consensus_1196#0 AATGCGCAAAGTTGTGTGTGTTGACA-ATTATAGAGCCATCCGTACAAAATCGTTGGACA 654
consensus_1196#1 AATGCGCAAAGTTGTGTGTGTTGACACATTATAGA-CCATCCGTACAAAATCGTTGGACA 418
************************** ******** ************************
consensus_1196#0 TCTGATCCGGTTTCTCGCTAGTATGTCAAAGCTGATGCGTGAATGTTGGGCATATGAACC 714
consensus_1196#1 TCTGGATCCGTTTCTCGCTAGTATGTCAAAGCTGATGCGTGAATGT-AGGCATATGAACC 477
**** * ************************************* ************
consensus_1196#0 CCAAATGTTCGATTAACAGCGCTAAGAATTAAAAAACTTTAACTTAAACTGGCTANCTCT 774
consensus_1196#1 CCAA-TGTTCGATTACCAGACGCTAGAATTAACAAAACTTA-CTTAAA------------ 523
**** ********** *** ******** *** *** ******
consensus_1196#0 GA 776
consensus_1196#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||