These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [GCGCACAACAATCGCTTCGACGAGACGGTGCAGGTGCTGAACGCCTCCATCCCAGACACCGTGCGCCAGCAGATGCTGGAGAAGGAGGAGCTGCTGAAGAAGCGGGCCGAACACGAGAAGCAAAAGCTGCTCGATCTGTTCAGCTCACCCACCTTCGCCACCCCGTCCCCGACCGGGTCGAGTCTGTCCGGCGAGGAGGCGATCAATTTCCACCTAATCAAGGCGGAAGAGTGTCGCAATCTGGCCCAGCATCATCTCGACCTGAAGAACGAATGCCACGCAAAGGCCCGGCAGGCGATTCAGCGCAATGTGCCGGGTTTGGCCGACTATTACTCGCAGATTGCGCGCCTGCACCGGACCAAGATCGACATGTACAACAGCCGGGCGTCCAACTGCATCATGGAGGTGCACAAGCTGAAGCTGAACAATGACGATGTGCTCGATCTGCACTATCTGCACTCGCAGGAGGCGCTGCGCTGCTTGGAGCTGTTCCTTGCCGAGCATGCCTCGAATCTGCTCAACTCGCAGCAACGCTTCAAGACGCTGTACATCATCACGGGGCGCGGATTGCATTCCGCCGATGGCAAACCAATCATCAAGCAGCGTGTTAAAGCCATGCTGAGAGTTAAGAACATAAGATACACCGAACTGAACCCGGGTTTCCTCAAGATTAAGC] [+] EMBL BX612712 [GCGCACAACAATCGCTTCGACGAGACGGTGCAGGTGCTGAACGCCTCCATCCCAGACACCGTGCGCCAGCAGATGCTGGAGAAGGAGGAGCTGCTGAAGAAGCGGGCCGAACACGAGAAGCAAAAGCTGCTCGATCTGTTCAGCTCACCCACCTTCGCCACCCCGTCCCCGACCGGGTCGAGTCTGTCCGGCGAGGAGGCGATCAATTTCCACCTAATCAAGGCGGAAGAGTGTCGCAATCTGGCCCAGCATCATCTCGACCTGAAGAACGAATGCCACGCAAAGGCCCGGCAGGCGATTCAGCGCAATGTGCCGGGTTTGGCCGACTATTACTCGCAGATTGCGCGCCTGCACCGGACCAAGATCGACATGTACAACAGCCGGGCGTCCAACTGCATCATGGAGGTGCACAAGCTGAAGCTGAACAATGACGATGTGCTCGATCTGCACTATCTGCACTCGCAGGAGGCGCTGCGCTGCTTGGAGCTGTTCCTTGCCGAGCATGCCTCGAATCTGCTCAACTCGCAGCAACGCTTCAAGACGCTGTACATCATCACGGGGCGCGGATTGCATTCCGCCGATGGCAAACCAATCATCAAGCAGCGTGTTAAAGCCATGCTGAGAGTTAAGAACATAAGATACACCGAACTGAACCCGGGTTTCCTCAAGATTAAGC] consensusID : consensus_1200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [GCAGAATNCGGCCCGACGAGNGTAGAGCTGCTGAAGAAGCGGGCCGAACACGAGAAGCAAAAGCTGCTCGATCTGTTCAGCTCACCCGACCTTCTGCCACCCCGTTCCCCGACCGGGTCGAGTCTGTCCGGCGAGGGAGGCGATCAATTTCCACCTAGAGTCAAGGCGGAAGAGTGTCGCATATCTTGGCCCAGCATCAGTCGTCGAGCTTGAAAGAACTGAATGCCACGCAAAGGCCCCAGTGCAAGGCGAGTTCGAGCGGCAAAATGGTGCCGGGAGCTTTAGGCGCGGACTAGTTTANCTCCGGCCAGGGAGTTTGCGCGTCCATTGGAACCGGNGAACCAAAGGATCGGACAATGTTACCAANCAAGGGCCAGGGGGGCACGTTCCAAAGTCTGGCAATCCAT] [+] EMBL BX468576 [GCAGAATNCGGCCCGACGAGNGTAGAGCTGCTGAAGAAGCGGGCCGAACACGAGAAGCAAAAGCTGCTCGATCTGTTCAGCTCACCCGACCTTCTGCCACCCCGTTCCCCGACCGGGTCGAGTCTGTCCGGCGAGGGAGGCGATCAATTTCCACCTAGAGTCAAGGCGGAAGAGTGTCGCATATCTTGGCCCAGCATCAGTCGTCGAGCTTGAAAGAACTGAATGCCACGCAAAGGCCCCAGTGCAAGGCGAGTTCGAGCGGCAAAATGGTGCCGGGAGCTTTAGGCGCGGACTAGTTTANCTCCGGCCAGGGAGTTTGCGCGTCCATTGGAACCGGNGAACCAAAGGATCGGACAATGTTACCAANCAAGGGCCAGGGGGGCACGTTCCAAAGTCTGGCAATCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1200#0 GCGCACAACAATCGCTTCGACGAGACGGTGCAGGTGCTGAACGCCTCCATCCCAGACACC 60 consensus_1200#1 ------------------------------------------------------------ consensus_1200#0 GTGCGCCAGCAGATGCTGGAGAAGGAGGAGCTGCTGAAGAAGCGGGCCGAACACGAGAAG 120 consensus_1200#1 --GCAGAATNCGGC-CCGACGAGNGTAGAGCTGCTGAAGAAGCGGGCCGAACACGAGAAG 57 ** * * * * ** * ********************************* consensus_1200#0 CAAAAGCTGCTCGATCTGTTCAGCTCACCC-ACCTTC-GCCACCCCGT-CCCCGACCGGG 177 consensus_1200#1 CAAAAGCTGCTCGATCTGTTCAGCTCACCCGACCTTCTGCCACCCCGTTCCCCGACCGGG 117 ****************************** ****** ********** *********** consensus_1200#0 TCGAGTCTGTCCGGCGAGG-AGGCGATCAATTTCCACCTAA--TCAAGGCGGAAGAGTGT 234 consensus_1200#1 TCGAGTCTGTCCGGCGAGGGAGGCGATCAATTTCCACCTAGAGTCAAGGCGGAAGAGTGT 177 ******************* ******************** ***************** consensus_1200#0 CGCA-ATCT-GGCCCAGCATCATC--TCGACCT--GAAGAAC-GAATGCCACGCAAAGGC 287 consensus_1200#1 CGCATATCTTGGCCCAGCATCAGTCGTCGAGCTTGAAAGAACTGAATGCCACGCAAAGGC 237 **** **** ************ **** ** ****** ***************** consensus_1200#0 CC----GGCAGGCGATTCAGCGCAATGTGCCGGGTTTGGCCGACTATTACTCGCAGATTG 343 consensus_1200#1 CCCAGTGCAAGGCGAGTTCGAGCGGCAAAATGGTGCCGG--GAGCTTTAGGCGCGGACTA 295 ** * ****** * * ** ** ** ** *** *** ** * consensus_1200#0 CGCGCCTGCACCGGACCAAGATCGACATGTACAACAGCCGGGCGTCCAACTGCATCATGG 403 consensus_1200#1 ---GTTTANCTCCGGCCAGGG--AGTTTGCGCGTCCATTGGAA---CCGGNGAACCAAAG 347 * * * * *** * ** * * ** * * * ** * consensus_1200#0 AGGTGCACAAGCTGAAGCTGAACAATGACGATGTGCTCGATCTGCACTATCTGCACTCGC 463 consensus_1200#1 GATCGGACAA--TGTTACCAANCAAGGGCCAGGGGGGCACGTTCCAAAGTCTGGCAATCC 405 * **** ** * * *** * * * * * * * ** **** * consensus_1200#0 AGGAGGCGCTGCGCTGCTTGGAGCTGTTCCTTGCCGAGCATGCCTCGAATCTGCTCAACT 523 consensus_1200#1 AT---------------------------------------------------------- 407 * consensus_1200#0 CGCAGCAACGCTTCAAGACGCTGTACATCATCACGGGGCGCGGATTGCATTCCGCCGATG 583 consensus_1200#1 ------------------------------------------------------------ consensus_1200#0 GCAAACCAATCATCAAGCAGCGTGTTAAAGCCATGCTGAGAGTTAAGAACATAAGATACA 643 consensus_1200#1 ------------------------------------------------------------ consensus_1200#0 CCGAACTGAACCCGGGTTTCCTCAAGATTAAGC 676 consensus_1200#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||