These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 856 fasta sequence [GGCAGAATCGGCACGNGGCAACTTACTGAAGCCAATGGTTACATTGTAAGTTTTTGTTCAACGGTCTATTCGCATCCATTCAGATTCAGAAAACGGTACAATAAGCTTAGGTAGAGTCGATTTAAATTTTTATTTTTGGGATATGTTTTGATGTACATTTTAAATTAAGTTAACATAGTTTGACGCAGGACATTTTGCTTACTAAGAACAGGTGTTGGTAGGCAAAGTAAAAGTTTCTACTTAAGAGATTATTGCGATAAGGGCAGATTTTAAGGTAAACGGTTTATATCGTCTGAATGAGCACTTTCGAGAGTATCAACATCAGCAAATTGCCAACAATTGCGAACAACTCACGATTGCATTTACTTTACCGCTTTACTCGTCCCTGTGCGTGCAACCAAGATCAACCAGGCGGTGAAATAGCAAAAACAGCAGCCGAAACAGAAACAAGCAGAAATAATAGGAATAACTCCAACCCAATCAATACAAATTGCAATAGGANGGATTCCGCAATTACCACAGCGGTTCTAAAGATCTAAACCCCATTGCCACCCGCGAATTTTACCAAACCCATTTTTACCTCTAATCACAACATGCGCACATGTTTAACCAAATAGCCCAAAACAAGGTTTAAAACAAACTCCAATTCCGATTTCNGAGTCCTCCCTTANNAGGGGGTATGGGCAACGAAANTGTGAGNCANCTTGAAAACGCNACCGAGAAANAAGAACGACACCCTGGGATTCGCGGAACTCGGGAATCCGCGAATNGGCGCCAGGTGNGAACCACAGGGAANCCCCAGGTTANGCGAAATGACCCGGATGGGGGGCTCACGACATAGGGATAGNCAAGGCGA] [+] EMBL BX468423 [GGCAGAATCGGCACGNGGCAACTTACTGAAGCCAATGGTTACATTGTAAGTTTTTGTTCAACGGTCTATTCGCATCCATTCAGATTCAGAAAACGGTACAATAAGCTTAGGTAGAGTCGATTTAAATTTTTATTTTTGGGATATGTTTTGATGTACATTTTAAATTAAGTTAACATAGTTTGACGCAGGACATTTTGCTTACTAAGAACAGGTGTTGGTAGGCAAAGTAAAAGTTTCTACTTAAGAGATTATTGCGATAAGGGCAGATTTTAAGGTAAACGGTTTATATCGTCTGAATGAGCACTTTCGAGAGTATCAACATCAGCAAATTGCCAACAATTGCGAACAACTCACGATTGCATTTACTTTACCGCTTTACTCGTCCCTGTGCGTGCAACCAAGATCAACCAGGCGGTGAAATAGCAAAAACAGCAGCCGAAACAGAAACAAGCAGAAATAATAGGAATAACTCCAACCCAATCAATACAAATTGCAATAGGANGGATTCCGCAATTACCACAGCGGTTCTAAAGATCTAAACCCCATTGCCACCCGCGAATTTTACCAAACCCATTTTTACCTCTAATCACAACATGCGCACATGTTTAACCAAATAGCCCAAAACAAGGTTTAAAACAAACTCCAATTCCGATTTCNGAGTCCTCCCTTANNAGGGGGTATGGGCAACGAAANTGTGAGNCANCTTGAAAACGCNACCGAGAAANAAGAACGACACCCTGGGATTCGCGGAACTCGGGAATCCGCGAATNGGCGCCAGGTGNGAACCACAGGGAANCCCCAGGTTANGCGAAATGACCCGGATGGGGGGCTCACGACATAGGGATAGNCAAGGCGA] consensusID : consensus_1203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 809 fasta sequence [TTGTAAGTTTTTGTTCAACGGTCTATTCGCATCCATTCAGATTCAGAAAACGGTACAATAAGCTTAGGTAGAGTCGATTTAAATTTTTATTTTGGGATATGTTTGATGTACATTTTAAATTAAGTTAACATAGTTTGACGCAGGACATTTGCTTACTAAGAACAGGTGTTGGTAGGCAAAGTAAAAGTTTCTACTTAAGAGATTATTGCGATAAGGGCAGATTTTAAGGTAAACGGTTTATATCGTCTGAATGAGCACTTTCGAGAGTATCAACATCAGCAAATTGCCAACAATTGCGAACAACTCACGATTGCATTTACTTTACCGCTTTACTCGTCCCTGTGCGTGCAACCAAGATCAACCAGCCGGTGAAATAGCAAAAACAGCAGCCGAAACAGAAACAAGCAGAAATAATAGAATAACTCCAACCAATCAATACAATTGCAATAGAGGATTCCGCAATTACCACAGCGGTTCTAAAATCTAACCCCATTGCCACCCGCAATTTACCAAACCCATTTTACTCTAATCACAACATGCAACATGTAACAATAGCCCAAACAGGTTAACAAACTCAATTCGTTTCGATCTCTTTGGTTGCACGATTTACACTAAAACACAAAAACACCTGCATCGATCGTATCGATTTGCAGTGACCACGATCCCGTTCGAATACCGTTTGGCTCGATTGTTTAGGCAAACCGCAAGATGANAGCGCAAGTAAAATCAGCTGGCAAGATTGTCACTACATCTTTAACAGCTAAACTTAACAGGAAACAAAATTAAACAAAGACTGAACAAACAAACCA] [+] EMBL AL931980 [TTGTAAGTTTTTGTTCAACGGTCTATTCGCATCCATTCAGATTCAGAAAACGGTACAATAAGCTTAGGTAGAGTCGATTTAAATTTTTATTTTGGGATATGTTTGATGTACATTTTAAATTAAGTTAACATAGTTTGACGCAGGACATTTGCTTACTAAGAACAGGTGTTGGTAGGCAAAGTAAAAGTTTCTACTTAAGAGATTATTGCGATAAGGGCAGATTTTAAGGTAAACGGTTTATATCGTCTGAATGAGCACTTTCGAGAGTATCAACATCAGCAAATTGCCAACAATTGCGAACAACTCACGATTGCATTTACTTTACCGCTTTACTCGTCCCTGTGCGTGCAACCAAGATCAACCAGCCGGTGAAATAGCAAAAACAGCAGCCGAAACAGAAACAAGCAGAAATAATAGAATAACTCCAACCAATCAATACAATTGCAATAGAGGATTCCGCAATTACCACAGCGGTTCTAAAATCTAACCCCATTGCCACCCGCAATTTACCAAACCCATTTTACTCTAATCACAACATGCAACATGTAACAATAGCCCAAACAGGTTAACAAACTCAATTCGTTTCGATCTCTTTGGTTGCACGATTTACACTAAAACACAAAAACACCTGCATCGATCGTATCGATTTGCAGTGACCACGATCCCGTTCGAATACCGTTTGGCTCGATTGTTTAGGCAAACCGCAAGATGANAGCGCAAGTAAAATCAGCTGGCAAGATTGTCACTACATCTTTAACAGCTAAACTTAACAGGAAACAAAATTAAACAAAGACTGAACAAACAAACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1203#0 GGCAGAATCGGCACGNGGCAACTTACTGAAGCCAATGGTTACATTGTAAGTTTTTGTTCA 60 consensus_1203#1 -------------------------------------------TTGTAAGTTTTTGTTCA 17 ***************** consensus_1203#0 ACGGTCTATTCGCATCCATTCAGATTCAGAAAACGGTACAATAAGCTTAGGTAGAGTCGA 120 consensus_1203#1 ACGGTCTATTCGCATCCATTCAGATTCAGAAAACGGTACAATAAGCTTAGGTAGAGTCGA 77 ************************************************************ consensus_1203#0 TTTAAATTTTTATTTTTGGGATATGTTTTGATGTACATTTTAAATTAAGTTAACATAGTT 180 consensus_1203#1 TTTAAATTTTTATTTT-GGGATATGTTT-GATGTACATTTTAAATTAAGTTAACATAGTT 135 **************** *********** ******************************* consensus_1203#0 TGACGCAGGACATTTTGCTTACTAAGAACAGGTGTTGGTAGGCAAAGTAAAAGTTTCTAC 240 consensus_1203#1 TGACGCAGGACATTT-GCTTACTAAGAACAGGTGTTGGTAGGCAAAGTAAAAGTTTCTAC 194 *************** ******************************************** consensus_1203#0 TTAAGAGATTATTGCGATAAGGGCAGATTTTAAGGTAAACGGTTTATATCGTCTGAATGA 300 consensus_1203#1 TTAAGAGATTATTGCGATAAGGGCAGATTTTAAGGTAAACGGTTTATATCGTCTGAATGA 254 ************************************************************ consensus_1203#0 GCACTTTCGAGAGTATCAACATCAGCAAATTGCCAACAATTGCGAACAACTCACGATTGC 360 consensus_1203#1 GCACTTTCGAGAGTATCAACATCAGCAAATTGCCAACAATTGCGAACAACTCACGATTGC 314 ************************************************************ consensus_1203#0 ATTTACTTTACCGCTTTACTCGTCCCTGTGCGTGCAACCAAGATCAACCAGGCGGTGAAA 420 consensus_1203#1 ATTTACTTTACCGCTTTACTCGTCCCTGTGCGTGCAACCAAGATCAACCAGCCGGTGAAA 374 *************************************************** ******** consensus_1203#0 TAGCAAAAACAGCAGCCGAAACAGAAACAAGCAGAAATAATAGGAATAACTCCAACCCAA 480 consensus_1203#1 TAGCAAAAACAGCAGCCGAAACAGAAACAAGCAGAAATAATAG-AATAACTCCAACC-AA 432 ******************************************* ************* ** consensus_1203#0 TCAATACAAATTGCAATAGGANGGATTCCGCAATTACCACAGCGGTTCTAAAGATCTAAA 540 consensus_1203#1 TCAATACAA-TTGCAATAG--AGGATTCCGCAATTACCACAGCGGTTCTAAA-ATCTAA- 487 ********* ********* ****************************** ****** consensus_1203#0 CCCCATTGCCACCCGCGAATTTTACCAAACCCATTTTTACCTCTAATCACAACATGCGCA 600 consensus_1203#1 CCCCATTGCCACCCGCAA--TTTACCAAACCCATTTT--ACTCTAATCACAACATGCA-A 542 **************** * ***************** ***************** * consensus_1203#0 CATGTTTAACCAAATAGCCCAAAACAAGGTTTAAAACAAACTCCAATTCCGATTTCNGAG 660 consensus_1203#1 CATG--TAAC--AATAGCCCAAA-CAGGTTAACAAACTCAATTCGTTTCGATCTCTTTGG 597 **** **** *********** ** * * **** * * * *** * * consensus_1203#0 TCCTCC--CTTANNAGGGGGTATGGGCAACGAAANTGTGAGNCANCTTGAA--AACGCNA 716 consensus_1203#1 TTGCACGATTTACACTAAAACACAAA-AACACCTGCATCGATCGTATCGATTTGCAGTGA 656 * * *** * *** * * * ** * * consensus_1203#0 CCGAGAAANAAGAACGACACCCTGGGATTCGCGGAACTCGGGAATCCGCGA-ATNGGCGC 775 consensus_1203#1 CCACGATCCCGTTCGAATACCGTTTGGCTCGATTGTTTAGGCAAACCGCAAGATGANAGC 716 ** ** * *** * * *** * ** ** **** * ** ** consensus_1203#0 -CAGGTGNGAACCACAGGGAAN-------CCCCAGGTTANGCGAAATGACCCGGATGGGG 827 consensus_1203#1 GCAAGTAAAATCAGCTGGCAAGATTGTCACTACATCTTTAACAGCTAAACTTAACAGGAA 776 ** ** * * * ** ** * ** ** * ** ** consensus_1203#0 GGCTCACGACATAGGGATAGNCAAGGCGA---- 856 consensus_1203#1 ACAAAATTAAACAAAGACTGAACAAACAAACCA 809 * * * * ** * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||