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Anopheles gambiae
cluster # 1207 cluster # 1207       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1207#0 length = 653 sequences # 1  
consensus_1207#1 length = 623 sequences # 1  

consensusID : consensus_1207#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 653
fasta sequence
                              [CAGAATNGGCAGAGGGTGTNGCTCTCGCAAGTCCATCGTTCNTCACCCACAGTTCATACACACACACAACTCAAACCACCACCGACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGCTCGAATCCCGGCAGCGCCGCGTTACTTACGTAACGATCTTGTGATCACACACGTTACAGATCGGGATTCTTGTCCTTGAGCACGGGCCAGGCGCACTACCGTTCGCTACCGGATCCTGTTCCTGCGGTTGTGTCGCTGTACTGTCAGCGGCTTGCATTTGTNTCGTTGTCAGTGCGGGTGCAGCAACAGTTGTTATTGCGCTCCACGTACGAGCGGTCGGTCGCGTGCGTGCGACGATCGAGCGTCGGAACTTACCTTTGCTGCCCGGTTGACTCGGGGCCTGCGGAACCCATGTCATGTACGTGGGACCGTGGTTTTGNTTGGCTGNTCTTCCGGGGCTGCCAGGTANTAACCGTTACCCGAGGCTCGGACGCGTGCCAGATGGGCGGCCAACATGGGAAACGGGNTGANTTTGGGTCGAAGTACACGGCTGAGATCATGCTGTTCCGGTTGGGTTGCGGAAAAGCGGCTTTGCGTTTGGGACAGGGTAACCAGCAGACCCGTGGCCATATATGTGTACGGCGGGGTACAGG]

[+] EMBL BX468620             [CAGAATNGGCAGAGGGTGTNGCTCTCGCAAGTCCATCGTTCNTCACCCACAGTTCATACACACACACAACTCAAACCACCACCGACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGCTCGAATCCCGGCAGCGCCGCGTTACTTACGTAACGATCTTGTGATCACACACGTTACAGATCGGGATTCTTGTCCTTGAGCACGGGCCAGGCGCACTACCGTTCGCTACCGGATCCTGTTCCTGCGGTTGTGTCGCTGTACTGTCAGCGGCTTGCATTTGTNTCGTTGTCAGTGCGGGTGCAGCAACAGTTGTTATTGCGCTCCACGTACGAGCGGTCGGTCGCGTGCGTGCGACGATCGAGCGTCGGAACTTACCTTTGCTGCCCGGTTGACTCGGGGCCTGCGGAACCCATGTCATGTACGTGGGACCGTGGTTTTGNTTGGCTGNTCTTCCGGGGCTGCCAGGTANTAACCGTTACCCGAGGCTCGGACGCGTGCCAGATGGGCGGCCAACATGGGAAACGGGNTGANTTTGGGTCGAAGTACACGGCTGAGATCATGCTGTTCCGGTTGGGTTGCGGAAAAGCGGCTTTGCGTTTGGGACAGGGTAACCAGCAGACCCGTGGCCATATATGTGTACGGCGGGGTACAGG]


>consensus_1207#0 CAGAATNGGCAGAGGGTGTNGCTCTCGCAAGTCCATCGTTCNTCACCCACAGTTCATACA CACACACAACTCAAACCACCACCGACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGC TCGAATCCCGGCAGCGCCGCGTTACTTACGTAACGATCTTGTGATCACACACGTTACAGA TCGGGATTCTTGTCCTTGAGCACGGGCCAGGCGCACTACCGTTCGCTACCGGATCCTGTT CCTGCGGTTGTGTCGCTGTACTGTCAGCGGCTTGCATTTGTNTCGTTGTCAGTGCGGGTG CAGCAACAGTTGTTATTGCGCTCCACGTACGAGCGGTCGGTCGCGTGCGTGCGACGATCG AGCGTCGGAACTTACCTTTGCTGCCCGGTTGACTCGGGGCCTGCGGAACCCATGTCATGT ACGTGGGACCGTGGTTTTGNTTGGCTGNTCTTCCGGGGCTGCCAGGTANTAACCGTTACC CGAGGCTCGGACGCGTGCCAGATGGGCGGCCAACATGGGAAACGGGNTGANTTTGGGTCG AAGTACACGGCTGAGATCATGCTGTTCCGGTTGGGTTGCGGAAAAGCGGCTTTGCGTTTG GGACAGGGTAACCAGCAGACCCGTGGCCATATATGTGTACGGCGGGGTACAGG



consensusID : consensus_1207#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence
                              [AGAATCGGCACCGGGCATGTTACTCGCAAGTCCATCGTTAATCACCCACAGTTCATACACACACACAACTCAAACCACCACCACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGCTCGAATCCCGGCAGCGCCGCGTACTTACGTAACGATCTTGTGATCACACACGTTACAGATCGGATTCTTGTCCTTGAGCAGGGCCAGCGCACTACCGTTCGCTACCGGATCCTGTTCCTGCGGTTGTGTCGCTGTACTGTCGCGCTGCATTTGTTTCTTGTCGTTGCGGTGCCAGGCAACATTTGTTTATTGCGCTCCACGTACGAGGCGTCGGTCGCGTGCCGTGCGACGTCCAGCTCGGGAAACTTACTTTTTGCGGCCCCGTTTGATCGGGGGGCCCTGCGGACNCAATTCCATGTCCCGTGGGCGTGGNTGTTGCTGTTCTTCGGGGCGCCAGTATAAACGCTTACCGAGCTCGGACGCTGCCAGTGGCGCCAATGGGAACGGTGGATTTGGGTCGAGTACACGCTGAGATCATGCTGTCCGTTGGGGTGGGAAAGCGGCTTGCTTGGACGGTACCGCAGCCGTGCCATTNTGTGTACGGCAGGGTACGGGCTTGGGTTCG]

[+] EMBL BX468593             [AGAATCGGCACCGGGCATGTTACTCGCAAGTCCATCGTTAATCACCCACAGTTCATACACACACACAACTCAAACCACCACCACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGCTCGAATCCCGGCAGCGCCGCGTACTTACGTAACGATCTTGTGATCACACACGTTACAGATCGGATTCTTGTCCTTGAGCAGGGCCAGCGCACTACCGTTCGCTACCGGATCCTGTTCCTGCGGTTGTGTCGCTGTACTGTCGCGCTGCATTTGTTTCTTGTCGTTGCGGTGCCAGGCAACATTTGTTTATTGCGCTCCACGTACGAGGCGTCGGTCGCGTGCCGTGCGACGTCCAGCTCGGGAAACTTACTTTTTGCGGCCCCGTTTGATCGGGGGGCCCTGCGGACNCAATTCCATGTCCCGTGGGCGTGGNTGTTGCTGTTCTTCGGGGCGCCAGTATAAACGCTTACCGAGCTCGGACGCTGCCAGTGGCGCCAATGGGAACGGTGGATTTGGGTCGAGTACACGCTGAGATCATGCTGTCCGTTGGGGTGGGAAAGCGGCTTGCTTGGACGGTACCGCAGCCGTGCCATTNTGTGTACGGCAGGGTACGGGCTTGGGTTCG]


>consensus_1207#1 AGAATCGGCACCGGGCATGTTACTCGCAAGTCCATCGTTAATCACCCACAGTTCATACAC ACACACAACTCAAACCACCACCACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGCTC GAATCCCGGCAGCGCCGCGTACTTACGTAACGATCTTGTGATCACACACGTTACAGATCG GATTCTTGTCCTTGAGCAGGGCCAGCGCACTACCGTTCGCTACCGGATCCTGTTCCTGCG GTTGTGTCGCTGTACTGTCGCGCTGCATTTGTTTCTTGTCGTTGCGGTGCCAGGCAACAT TTGTTTATTGCGCTCCACGTACGAGGCGTCGGTCGCGTGCCGTGCGACGTCCAGCTCGGG AAACTTACTTTTTGCGGCCCCGTTTGATCGGGGGGCCCTGCGGACNCAATTCCATGTCCC GTGGGCGTGGNTGTTGCTGTTCTTCGGGGCGCCAGTATAAACGCTTACCGAGCTCGGACG CTGCCAGTGGCGCCAATGGGAACGGTGGATTTGGGTCGAGTACACGCTGAGATCATGCTG TCCGTTGGGGTGGGAAAGCGGCTTGCTTGGACGGTACCGCAGCCGTGCCATTNTGTGTAC GGCAGGGTACGGGCTTGGGTTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1207#0      CAGAATNGGCAGAGGGTGTNGCTCTCGCAAGTCCATCGTTCNTCACCCACAGTTCATACA 60
consensus_1207#1      -AGAATCGGCACCGGGCATGTTACTCGCAAGTCCATCGTTAATCACCCACAGTTCATACA 59
                       ***** ****  ***  *    *****************  ******************

consensus_1207#0      CACACACAACTCAAACCACCACCGACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGC 120
consensus_1207#1      CACACACAACTCAAACCACCACC-ACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGC 118
                      *********************** ************************************

consensus_1207#0      TCGAATCCCGGCAGCGCCGCGTTACTTACGTAACGATCTTGTGATCACACACGTTACAGA 180
consensus_1207#1      TCGAATCCCGGCAGCGCCGCGT-ACTTACGTAACGATCTTGTGATCACACACGTTACAGA 177
                      ********************** *************************************

consensus_1207#0      TCGGGATTCTTGTCCTTGAGCACGGGCCAGGCGCACTACCGTTCGCTACCGGATCCTGTT 240
consensus_1207#1      TCGG-ATTCTTGTCCTTGAGCA-GGGCCAG-CGCACTACCGTTCGCTACCGGATCCTGTT 234
                      **** ***************** ******* *****************************

consensus_1207#0      CCTGCGGTTGTGTCGCTGTACTGTCAGCGGCTTGCATTTGTNTCGTTGTCAGTGCGGGTG 300
consensus_1207#1      CCTGCGGTTGTGTCGCTGTACTGTC-GCG--CTGCATTTGTTTC-TTGTCGTTGCGGTGC 290
                      ************************* ***   ********* ** *****  *****   

consensus_1207#0      CAG-CAACAGTTGTT-ATTGCGCTCCACGTACGAGCGGTCGGTCGCGTGC-GTGCGACGA 357
consensus_1207#1      CAGGCAACATTTGTTTATTGCGCTCCACGTACGAGGCGTCGGTCGCGTGCCGTGCGACGT 350
                      *** ***** ***** *******************  ************* ******** 

consensus_1207#0      TCGAGCGTCGGAACTTACCTTT-GCTGCCCGGTTGACTCGGGG---CCTGCGGAACCCAT 413
consensus_1207#1      CCAGCTCGGGAAACTTACTTTTTGCGGCCCCGTTTGATCGGGGGGCCCTGCGGACNCAAT 410
                       *       * ******* *** ** **** ***   ******   ********  * **

consensus_1207#0      GTCATGTACGTGGGACCGTGGTTTTGNTTGGCTGNTCTTCCGGGGCTGCCAGGTANTAAC 473
consensus_1207#1      TCCATGTCC-CGTGGGCGTGGN--TGTT--GCTGTTCTTC--GGGGCGCCAG-TATAAAC 462
                        ***** *  * *  *****   ** *  **** *****  ***  ***** **  ***

consensus_1207#0      CGTTACCCGAGGCTCGGACGCGTGCCAGATGGGCGGCCAACATGGGAAACGGGNTGANTT 533
consensus_1207#1      GCTTACC--GAGCTCGGACGC-TGCCAGT--GGCG-CCAAT---GGGAACGG--TGGATT 511
                        *****    ********** ******   **** ****    ** *****  **  **

consensus_1207#0      TGGGTCGAAGTACACGGCTGAGATCATGCTGTTCCGGTTGGGTTGCGGAAAAGCGGCTTT 593
consensus_1207#1      TGGGTCGA-GTACACG-CTGAGATCATGCTGTCC--GTTGGG--GTGGGAAAGCGGCTT- 564
                      ******** ******* *************** *  ******  * ** ********** 

consensus_1207#0      GCGTTTGGGACAGGGTAACCAGCAGACCCGTGGCCATATATGTGTACGGCGGGGTACAGG 653
consensus_1207#1      --GCTTGG---ACGGTACC--GCAG--CCGTG-CCAT-TNTGTGTACGGCAGGGTACGGG 613
                        * ****   * **** *  ****  ***** **** * ********** ****** **

consensus_1207#0      ----------
consensus_1207#1      CTTGGGTTCG 623
                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)