These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [CAGAATNGGCAGAGGGTGTNGCTCTCGCAAGTCCATCGTTCNTCACCCACAGTTCATACACACACACAACTCAAACCACCACCGACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGCTCGAATCCCGGCAGCGCCGCGTTACTTACGTAACGATCTTGTGATCACACACGTTACAGATCGGGATTCTTGTCCTTGAGCACGGGCCAGGCGCACTACCGTTCGCTACCGGATCCTGTTCCTGCGGTTGTGTCGCTGTACTGTCAGCGGCTTGCATTTGTNTCGTTGTCAGTGCGGGTGCAGCAACAGTTGTTATTGCGCTCCACGTACGAGCGGTCGGTCGCGTGCGTGCGACGATCGAGCGTCGGAACTTACCTTTGCTGCCCGGTTGACTCGGGGCCTGCGGAACCCATGTCATGTACGTGGGACCGTGGTTTTGNTTGGCTGNTCTTCCGGGGCTGCCAGGTANTAACCGTTACCCGAGGCTCGGACGCGTGCCAGATGGGCGGCCAACATGGGAAACGGGNTGANTTTGGGTCGAAGTACACGGCTGAGATCATGCTGTTCCGGTTGGGTTGCGGAAAAGCGGCTTTGCGTTTGGGACAGGGTAACCAGCAGACCCGTGGCCATATATGTGTACGGCGGGGTACAGG] [+] EMBL BX468620 [CAGAATNGGCAGAGGGTGTNGCTCTCGCAAGTCCATCGTTCNTCACCCACAGTTCATACACACACACAACTCAAACCACCACCGACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGCTCGAATCCCGGCAGCGCCGCGTTACTTACGTAACGATCTTGTGATCACACACGTTACAGATCGGGATTCTTGTCCTTGAGCACGGGCCAGGCGCACTACCGTTCGCTACCGGATCCTGTTCCTGCGGTTGTGTCGCTGTACTGTCAGCGGCTTGCATTTGTNTCGTTGTCAGTGCGGGTGCAGCAACAGTTGTTATTGCGCTCCACGTACGAGCGGTCGGTCGCGTGCGTGCGACGATCGAGCGTCGGAACTTACCTTTGCTGCCCGGTTGACTCGGGGCCTGCGGAACCCATGTCATGTACGTGGGACCGTGGTTTTGNTTGGCTGNTCTTCCGGGGCTGCCAGGTANTAACCGTTACCCGAGGCTCGGACGCGTGCCAGATGGGCGGCCAACATGGGAAACGGGNTGANTTTGGGTCGAAGTACACGGCTGAGATCATGCTGTTCCGGTTGGGTTGCGGAAAAGCGGCTTTGCGTTTGGGACAGGGTAACCAGCAGACCCGTGGCCATATATGTGTACGGCGGGGTACAGG] consensusID : consensus_1207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [AGAATCGGCACCGGGCATGTTACTCGCAAGTCCATCGTTAATCACCCACAGTTCATACACACACACAACTCAAACCACCACCACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGCTCGAATCCCGGCAGCGCCGCGTACTTACGTAACGATCTTGTGATCACACACGTTACAGATCGGATTCTTGTCCTTGAGCAGGGCCAGCGCACTACCGTTCGCTACCGGATCCTGTTCCTGCGGTTGTGTCGCTGTACTGTCGCGCTGCATTTGTTTCTTGTCGTTGCGGTGCCAGGCAACATTTGTTTATTGCGCTCCACGTACGAGGCGTCGGTCGCGTGCCGTGCGACGTCCAGCTCGGGAAACTTACTTTTTGCGGCCCCGTTTGATCGGGGGGCCCTGCGGACNCAATTCCATGTCCCGTGGGCGTGGNTGTTGCTGTTCTTCGGGGCGCCAGTATAAACGCTTACCGAGCTCGGACGCTGCCAGTGGCGCCAATGGGAACGGTGGATTTGGGTCGAGTACACGCTGAGATCATGCTGTCCGTTGGGGTGGGAAAGCGGCTTGCTTGGACGGTACCGCAGCCGTGCCATTNTGTGTACGGCAGGGTACGGGCTTGGGTTCG] [+] EMBL BX468593 [AGAATCGGCACCGGGCATGTTACTCGCAAGTCCATCGTTAATCACCCACAGTTCATACACACACACAACTCAAACCACCACCACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGCTCGAATCCCGGCAGCGCCGCGTACTTACGTAACGATCTTGTGATCACACACGTTACAGATCGGATTCTTGTCCTTGAGCAGGGCCAGCGCACTACCGTTCGCTACCGGATCCTGTTCCTGCGGTTGTGTCGCTGTACTGTCGCGCTGCATTTGTTTCTTGTCGTTGCGGTGCCAGGCAACATTTGTTTATTGCGCTCCACGTACGAGGCGTCGGTCGCGTGCCGTGCGACGTCCAGCTCGGGAAACTTACTTTTTGCGGCCCCGTTTGATCGGGGGGCCCTGCGGACNCAATTCCATGTCCCGTGGGCGTGGNTGTTGCTGTTCTTCGGGGCGCCAGTATAAACGCTTACCGAGCTCGGACGCTGCCAGTGGCGCCAATGGGAACGGTGGATTTGGGTCGAGTACACGCTGAGATCATGCTGTCCGTTGGGGTGGGAAAGCGGCTTGCTTGGACGGTACCGCAGCCGTGCCATTNTGTGTACGGCAGGGTACGGGCTTGGGTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1207#0 CAGAATNGGCAGAGGGTGTNGCTCTCGCAAGTCCATCGTTCNTCACCCACAGTTCATACA 60 consensus_1207#1 -AGAATCGGCACCGGGCATGTTACTCGCAAGTCCATCGTTAATCACCCACAGTTCATACA 59 ***** **** *** * ***************** ****************** consensus_1207#0 CACACACAACTCAAACCACCACCGACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGC 120 consensus_1207#1 CACACACAACTCAAACCACCACC-ACAAGAAGAATGATAAAAAGCGTTCACCGGGACGGC 118 *********************** ************************************ consensus_1207#0 TCGAATCCCGGCAGCGCCGCGTTACTTACGTAACGATCTTGTGATCACACACGTTACAGA 180 consensus_1207#1 TCGAATCCCGGCAGCGCCGCGT-ACTTACGTAACGATCTTGTGATCACACACGTTACAGA 177 ********************** ************************************* consensus_1207#0 TCGGGATTCTTGTCCTTGAGCACGGGCCAGGCGCACTACCGTTCGCTACCGGATCCTGTT 240 consensus_1207#1 TCGG-ATTCTTGTCCTTGAGCA-GGGCCAG-CGCACTACCGTTCGCTACCGGATCCTGTT 234 **** ***************** ******* ***************************** consensus_1207#0 CCTGCGGTTGTGTCGCTGTACTGTCAGCGGCTTGCATTTGTNTCGTTGTCAGTGCGGGTG 300 consensus_1207#1 CCTGCGGTTGTGTCGCTGTACTGTC-GCG--CTGCATTTGTTTC-TTGTCGTTGCGGTGC 290 ************************* *** ********* ** ***** ***** consensus_1207#0 CAG-CAACAGTTGTT-ATTGCGCTCCACGTACGAGCGGTCGGTCGCGTGC-GTGCGACGA 357 consensus_1207#1 CAGGCAACATTTGTTTATTGCGCTCCACGTACGAGGCGTCGGTCGCGTGCCGTGCGACGT 350 *** ***** ***** ******************* ************* ******** consensus_1207#0 TCGAGCGTCGGAACTTACCTTT-GCTGCCCGGTTGACTCGGGG---CCTGCGGAACCCAT 413 consensus_1207#1 CCAGCTCGGGAAACTTACTTTTTGCGGCCCCGTTTGATCGGGGGGCCCTGCGGACNCAAT 410 * * ******* *** ** **** *** ****** ******** * ** consensus_1207#0 GTCATGTACGTGGGACCGTGGTTTTGNTTGGCTGNTCTTCCGGGGCTGCCAGGTANTAAC 473 consensus_1207#1 TCCATGTCC-CGTGGGCGTGGN--TGTT--GCTGTTCTTC--GGGGCGCCAG-TATAAAC 462 ***** * * * ***** ** * **** ***** *** ***** ** *** consensus_1207#0 CGTTACCCGAGGCTCGGACGCGTGCCAGATGGGCGGCCAACATGGGAAACGGGNTGANTT 533 consensus_1207#1 GCTTACC--GAGCTCGGACGC-TGCCAGT--GGCG-CCAAT---GGGAACGG--TGGATT 511 ***** ********** ****** **** **** ** ***** ** ** consensus_1207#0 TGGGTCGAAGTACACGGCTGAGATCATGCTGTTCCGGTTGGGTTGCGGAAAAGCGGCTTT 593 consensus_1207#1 TGGGTCGA-GTACACG-CTGAGATCATGCTGTCC--GTTGGG--GTGGGAAAGCGGCTT- 564 ******** ******* *************** * ****** * ** ********** consensus_1207#0 GCGTTTGGGACAGGGTAACCAGCAGACCCGTGGCCATATATGTGTACGGCGGGGTACAGG 653 consensus_1207#1 --GCTTGG---ACGGTACC--GCAG--CCGTG-CCAT-TNTGTGTACGGCAGGGTACGGG 613 * **** * **** * **** ***** **** * ********** ****** ** consensus_1207#0 ---------- consensus_1207#1 CTTGGGTTCG 623 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||