These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [CCGGACGTACTGCAGCTGGCCACTACAACGACGATGCCGGCGCCACCGGTGCCGGGAGCGCTGGGCAGCAGCTCGAGCCCGGACCTGGACGGTAGCGTTGTTGTTGATCATCCCGCGGGCGGTCTGCATCCGTTGCGACCCACGAAACCGGTTCCGCCCACACACCCGACCGGCGGTGGCTTTGACGAGAGCAAACTGTCCAAGCCGGAGCTGCTGGCACAGCTGATCGCGGACAAGAACCTGCGGATGCCGATCGCCTTCCTCGTCGACACGTCGAACGATTCGCTCGCCTTCACCAAGAAGGTGCTAGAGGCGTCGCTGGTACCGAAGACCCCGCTCGATGCAATCCTGATGCGCTACAATGCCAGCGGTAAGTATCGTTTTTCACACCACGCTGTGTCATCACGTACGCGCTGCTTCGGCACGTACCGGTGCGCCTTCAGCGGCGTGATCCAAAAGCTAAACAATGCCCAATTACTCATGACGTCATGGTTTTTTTTTTTTGCTTTGGTGGGGAGTTGTTGAACGTTGCAAGCACGCCAGAGTGCGTAAACTGAGGTGTGTGTGAACTGCAGTCCCGTTTATGTGGGGCTTTTTTGTTCCTTCTTCGGCACAGGCATATCCAAATCGGTTACCTTCCGCAACACCAAG] [+] EMBL BM581711 [CCGGACGTACTGCAGCTGGCCACTACAACGACGATGCCGGCGCCACCGGTGCCGGGAGCGCTGGGCAGCAGCTCGAGCCCGGACCTGGACGGTAGCGTTGTTGTTGATCATCCCGCGGGCGGTCTGCATCCGTTGCGACCCACGAAACCGGTTCCGCCCACACACCCGACCGGCGGTGGCTTTGACGAGAGCAAACTGTCCAAGCCGGAGCTGCTGGCACAGCTGATCGCGGACAAGAACCTGCGGATGCCGATCGCCTTCCTCGTCGACACGTCGAACGATTCGCTCGCCTTCACCAAGAAGGTGCTAGAGGCGTCGCTGGTACCGAAGACCCCGCTCGATGCAATCCTGATGCGCTACAATGCCAGCGGTAAGTATCGTTTTTCACACCACGCTGTGTCATCACGTACGCGCTGCTTCGGCACGTACCGGTGCGCCTTCAGCGGCGTGATCCAAAAGCTAAACAATGCCCAATTACTCATGACGTCATGGTTTTTTTTTTTTGCTTTGGTGGGGAGTTGTTGAACGTTGCAAGCACGCCAGAGTGCGTAAACTGAGGTGTGTGTGAACTGCAGTCCCGTTTATGTGGGGCTTTTTTGTTCCTTCTTCGGCACAGGCATATCCAAATCGGTTACCTTCCGCAACACCAAG] consensusID : consensus_1222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [CCGGTCCACACACCCGACCGGCGGTGGCTTTGACGAGAGCAAACTGTCCAAGCCGGAGCTGCTGGCACAGCTGATCGCGGACAAGAACCTGCGGATGCCGATCGCCTTCCTCGTCGACACGTCGAACGATTCGCTCGCCTTCACCAAGAAGGTGCTAGAGACGTCGCTGGTACCGAAAACCCCGCTCGATGCAATCCTGATGCGCTACAATGCCAGCGGCATATCCAAATCGGTTACCTTCCGCAACACCAAGTCACTGATGGAGGCGGTAAACCTGCTGCAGCCCAGCTTTGACCGGGGCGGCAGCGAGTACTACAGCATTCTGCGCACCTCGCAGGAGATACCGTACGATAGTGCTATCTTCTTGGCCACCAGCAGGGCGACTACCGACGCGCAGCTTTCCCGCATGACCGCACTCACCCTGCTCAAGAAGCGGATTCGGCTGTACGTGATCTGGTTCGGCGAGGAGATCC] [+] EMBL BM643984 [CCGGTCCACACACCCGACCGGCGGTGGCTTTGACGAGAGCAAACTGTCCAAGCCGGAGCTGCTGGCACAGCTGATCGCGGACAAGAACCTGCGGATGCCGATCGCCTTCCTCGTCGACACGTCGAACGATTCGCTCGCCTTCACCAAGAAGGTGCTAGAGACGTCGCTGGTACCGAAAACCCCGCTCGATGCAATCCTGATGCGCTACAATGCCAGCGGCATATCCAAATCGGTTACCTTCCGCAACACCAAGTCACTGATGGAGGCGGTAAACCTGCTGCAGCCCAGCTTTGACCGGGGCGGCAGCGAGTACTACAGCATTCTGCGCACCTCGCAGGAGATACCGTACGATAGTGCTATCTTCTTGGCCACCAGCAGGGCGACTACCGACGCGCAGCTTTCCCGCATGACCGCACTCACCCTGCTCAAGAAGCGGATTCGGCTGTACGTGATCTGGTTCGGCGAGGAGATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1222#0 CCGGACGTACTGCAGCTGGCCACTACAACGACGATGCCGGCGCCACCGGTGCCGGGAGCG 60 consensus_1222#1 ------------------------------------------------------------ consensus_1222#0 CTGGGCAGCAGCTCGAGCCCGGACCTGGACGGTAGCGTTGTTGTTGATCATCCCGCGGGC 120 consensus_1222#1 ------------------------------------------------------------ consensus_1222#0 GGTCTGCATCCGTTGCGACCCACGAAACCGGTTCCGCCCACACACCCGACCGGCGGTGGC 180 consensus_1222#1 --------------------------------CCGGTCCACACACCCGACCGGCGGTGGC 28 * * *********************** consensus_1222#0 TTTGACGAGAGCAAACTGTCCAAGCCGGAGCTGCTGGCACAGCTGATCGCGGACAAGAAC 240 consensus_1222#1 TTTGACGAGAGCAAACTGTCCAAGCCGGAGCTGCTGGCACAGCTGATCGCGGACAAGAAC 88 ************************************************************ consensus_1222#0 CTGCGGATGCCGATCGCCTTCCTCGTCGACACGTCGAACGATTCGCTCGCCTTCACCAAG 300 consensus_1222#1 CTGCGGATGCCGATCGCCTTCCTCGTCGACACGTCGAACGATTCGCTCGCCTTCACCAAG 148 ************************************************************ consensus_1222#0 AAGGTGCTAGAGGCGTCGCTGGTACCGAAGACCCCGCTCGATGCAATCCTGATGCGCTAC 360 consensus_1222#1 AAGGTGCTAGAGACGTCGCTGGTACCGAAAACCCCGCTCGATGCAATCCTGATGCGCTAC 208 ************ **************** ****************************** consensus_1222#0 AATGCCAGCGGTAAGTATCGTTTTTCACACCACGCTGTGTCATCACGTACGCGCTGCTTC 420 consensus_1222#1 AATGCCAGCGGCA--TATCCAAATCGGTTACCTTCCGCAACACCAAGT---CACTGATGG 263 *********** * **** * * * * ** ** ** * *** * consensus_1222#0 GGCACGTACCGGTGCGCCTTCAGCGGCGTGATCCAAAAGCTAAACAATGCCCAATTACTC 480 consensus_1222#1 AGGCGGTAAACCTGCTGCAGCCCAGCTTTGACCGGGGCGGCAGCGAGTACTACAGCATTC 323 * *** *** * * * *** * * * * * * * * ** consensus_1222#0 ATGACGTCATGGTTTTTTTTTTTTGCTTTGGTGGGGAGTTGTTGAACGTTGCAAGCACGC 540 consensus_1222#1 TGCGCACCTCGCAGGAGATACCGTACGATAGTGCTATCTTCTTGGCCACCAGCAGGGCGA 383 * * * * * * * *** ** *** * ** ** consensus_1222#0 CAGAGTGCGTA-AACTGAGGTGTGTGTGAACTGCAGTCCCGTTTATGTGGGGCTTTT--T 597 consensus_1222#1 CTACCGACGCGCAGCTTTCCCGCATGACCGCACTCACCCTGCTCAAGAAGCGGATTCGGC 443 * ** * ** * ** * ** * * * * * * ** consensus_1222#0 TGTTCCTTCTTCGGCACAGGCATATCCAAATCGGTTACCTTCCGCAACACCAAG 651 consensus_1222#1 TGTACGTGATCTGGTTCGGCGAGG---AGATCC--------------------- 473 *** * * * ** * * * * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||