These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [CCGGTTTGTTTTAGTGTCGACAACGTACGGATTCGAGCCATAACGTAAATTTCCGCAATAAAATATGTTCTCAATGTCATCGAAATTCTCACGAGGGACAAGGTGGTAGATCAGGCAAAGAGCTTGCTTTTCAAGCCTTTTAATTGTTTTCTTGTGCGTTTCTTTTTTTTATCTACATTTATTCATACCAACTCTATTCTTTAGAATAAAACATACCATTAGCGAATCGAAACTGCCGTTCAATTTAGATATATTTCCACGCTCGGTGTATATAAATTTACATTTCTATATTTTTGTAACAAAGCAGCAGTAATAAAAAAAGAAAGGAAACAGGGCAAGTTACACTTAAAGAGGTAAGCGAACTAAGAGCGGATGACCCGAAACCCTCATAATACAGATTTGAAGGTGGTAGGGCTAAAGTTTCAGGGCAGCAACAAAAAAACAAGAAAAAATCACACACAATGCTATGTGCACCATACAAATCAGTTTTAGAAAACTATGAAAACAGCTTGTGTAACGCCTTTTGCCTAGCGTGTACGTAAACCGATCCCTTGCTTTCCCTTAAAAAAAAAACAGTGATAGCTACCGCCTCAATGACTAAATATAGTAGTAGCGGTGCTGAACATACGAAAGAGATAATGACAAAACGATAGATATATTATTTTTGCTATATCACAGGATTGTGTTTGCTTTAGGAACTATTCTAAATT] [+] EMBL BM637290 [CCGGTTTGTTTTAGTGTCGACAACGTACGGATTCGAGCCATAACGTAAATTTCCGCAATAAAATATGTTCTCAATGTCATCGAAATTCTCACGAGGGACAAGGTGGTAGATCAGGCAAAGAGCTTGCTTTTCAAGCCTTTTAATTGTTTTCTTGTGCGTTTCTTTTTTTTATCTACATTTATTCATACCAACTCTATTCTTTAGAATAAAACATACCATTAGCGAATCGAAACTGCCGTTCAATTTAGATATATTTCCACGCTCGGTGTATATAAATTTACATTTCTATATTTTTGTAACAAAGCAGCAGTAATAAAAAAAGAAAGGAAACAGGGCAAGTTACACTTAAAGAGGTAAGCGAACTAAGAGCGGATGACCCGAAACCCTCATAATACAGATTTGAAGGTGGTAGGGCTAAAGTTTCAGGGCAGCAACAAAAAAACAAGAAAAAATCACACACAATGCTATGTGCACCATACAAATCAGTTTTAGAAAACTATGAAAACAGCTTGTGTAACGCCTTTTGCCTAGCGTGTACGTAAACCGATCCCTTGCTTTCCCTTAAAAAAAAAACAGTGATAGCTACCGCCTCAATGACTAAATATAGTAGTAGCGGTGCTGAACATACGAAAGAGATAATGACAAAACGATAGATATATTATTTTTGCTATATCACAGGATTGTGTTTGCTTTAGGAACTATTCTAAATT] consensusID : consensus_1230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [CCGCGCCCTGTAGATCCTACAACAAAGAGTTTTGAACATTATTGGATGCATTTTGTAAAAGTGTGTCGTAGATCTTCTGTATGCGAGAGTTGGCTGCTGTGCGGTCGATATGCGTGAAACTAGATGATGGATCGCTTAGTTTACATTTGTAGCATTGCACGATCATTTCCATTAATGTTCAATGATTACGGCTGAACTGGCGGCAGTTTGTAATGTTGTTATACGCGTAATTGGCGCAGATTGACTCTGCCGACAGGTAAATGTATCGCAAAAACGAGGATCGTGGAAGCACTAAGTTATCTACCGAAAGAAGGTAATGCGAACCACCTTGGCTTGGCTTCACAAGTGCTGCATGCTTGAGCATGAAATAGGCATGCTTATTTCTTGGGAAACTAAACTGTGTGATTCACAAATGTGTATACTCTAAGGAAGTTTTACAGTTTTGTTTGCTTATACTAAAAGCAAAATGGGAGTGAAATTAATTTCAGTTTTGTATTGCTATTACACCAATGTTTCAGTTTGTATTAGTGTCGACAACGTACGGATTCGAGCCGTAACGTAAATTTCCGCAATAAAATATGTTCTCAATGTCATCGAAATTCTCACGAGGGGACAAGGGGGGTAGATCAGGCAAAGAGCTTACTTTTCAGCCTTTTAATTGTTTTCCTGGGGCGGTTCCTTTTTTATCTACATT] [+] EMBL BM612489 [CCGCGCCCTGTAGATCCTACAACAAAGAGTTTTGAACATTATTGGATGCATTTTGTAAAAGTGTGTCGTAGATCTTCTGTATGCGAGAGTTGGCTGCTGTGCGGTCGATATGCGTGAAACTAGATGATGGATCGCTTAGTTTACATTTGTAGCATTGCACGATCATTTCCATTAATGTTCAATGATTACGGCTGAACTGGCGGCAGTTTGTAATGTTGTTATACGCGTAATTGGCGCAGATTGACTCTGCCGACAGGTAAATGTATCGCAAAAACGAGGATCGTGGAAGCACTAAGTTATCTACCGAAAGAAGGTAATGCGAACCACCTTGGCTTGGCTTCACAAGTGCTGCATGCTTGAGCATGAAATAGGCATGCTTATTTCTTGGGAAACTAAACTGTGTGATTCACAAATGTGTATACTCTAAGGAAGTTTTACAGTTTTGTTTGCTTATACTAAAAGCAAAATGGGAGTGAAATTAATTTCAGTTTTGTATTGCTATTACACCAATGTTTCAGTTTGTATTAGTGTCGACAACGTACGGATTCGAGCCGTAACGTAAATTTCCGCAATAAAATATGTTCTCAATGTCATCGAAATTCTCACGAGGGGACAAGGGGGGTAGATCAGGCAAAGAGCTTACTTTTCAGCCTTTTAATTGTTTTCCTGGGGCGGTTCCTTTTTTATCTACATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1230#0 CCGGTTTGTTTTAGTGTCGACAACGTACGGATTCGAGCCATAACGTAAATTTCCGCAATA 60 consensus_1230#1 --------------------------------CCGCGCCCT---GTAGATC-CTACAACA 24 ** *** * *** ** * *** * consensus_1230#0 AAATATGTTCTCAATGTCATCGAAATTCTCACGAGGGACAAGGTGGTAGATCAGGCA--- 117 consensus_1230#1 AAGA--GTTTTGAACATTATTGGATGCATTTTGTAAAAGTGTGTCGTAGATCTTCTGTAT 82 ** *** * ** * ** * * * * * ** ******* consensus_1230#0 --AAGAGCTTGCTTTT-CAAGCCTTTTAATTGTTTTCTTGTGCGTTTCTTTTTTTTATCT 174 consensus_1230#1 GCGAGAGTTGGCTGCTGTGCGGTCGATATGCGTGAAACTAGATGATGGATCGCTTAGTTT 142 **** * *** * * ** ** * * * * ** * * consensus_1230#0 ACATTTATTCATACCAACTCTATTCTTTAGAATAAAACATACCATTAGCGAATCGAAACT 234 consensus_1230#1 ACATTTGT--AGCATTGCACGATCATTTCCATTA--ATGTTCAATGATTACGGCTGAACT 198 ****** * * * * ** *** * ** * * * ** * * **** consensus_1230#0 GCCGTTCAATTTAGATATATTTCCACGCTCGGTGTATATAAATTTACATTTCTATATTTT 294 consensus_1230#1 GGCGGCAGTTTGTAATGTTGTTATACGCGTAATTGGCGCAGATTGAC---TCTGCCGACA 255 * ** ** ** * ** **** * * *** ** *** consensus_1230#0 TGTAACAAAGCAGCAGTAATAAAAAAAGAAAGGAAACAGGGCAAGTTACACTTAAAGAGG 354 consensus_1230#1 GGTAAATGTATCGCAAAAACGAGGATCGTGGAAGCACTAAGTTATCTAC-CGAAAGAAGG 314 **** *** ** * * * ** * * *** * ** *** consensus_1230#0 TAA-GCGAACTAAGAGCGGATGACCCGAAACCCTCATAATAC--AGATTTGAAGGTGGTA 411 consensus_1230#1 TAATGCGAACCACCTTGGCTTGGCTTCACAAGTGCTGCATGCTTGAGCATGAAATAGGCA 374 *** ****** * * ** * * * * ** * **** ** * consensus_1230#0 GGGCTAAAGTTTCAGGGCAGCAACAAAAAAACAAGAAAAAATCACACACAATGCTATGTG 471 consensus_1230#1 TGCTTAT--TTCTTGGGAAACTA-AACTGTGTGATTCACAAATGTGTATACT-CTAAGGA 430 * ** ** *** * * * ** * * ** * * * *** * consensus_1230#0 CACCATACAAATCAGTTTTAGAAAACTATGAAAACAGCTTGTGTAACGCC---TTTTGCC 528 consensus_1230#1 AGTTTTACAGTTTTGTTTGCTTATACTAAAAGCAAAATGGGAGTGAAATTAATTTCAGTT 490 **** * **** * **** * * * * ** * ** * consensus_1230#0 TAGCGT-GTACGTAAACCGATCCCTTGCTTTCCCTTAAAAAAAAAACAGTGATAGCTACC 587 consensus_1230#1 TTGTATTGCTATTACACCAATGTTTCAGTTTGTATTAGTGTCGACAACGTACGGATTCGA 550 * * * * ** *** ** * *** *** * * ** * consensus_1230#0 GCCTCAATG--ACTAAATATAGTAGTAGCGGTGCTGAACAT-ACGAAAGAGATAATGACA 644 consensus_1230#1 GCCGTAACGTAAATTTCCGCAATAAAATATGTTCTCAATGTCATCGAAATTCTCACGAGG 610 *** ** * * * * ** * ** ** ** * * ** * * ** consensus_1230#0 AAACGA------TAGATATATTATTTTTGCTATATCACAGGATTGTGTTTGCTTTA--GG 696 consensus_1230#1 GGACAAGGGGGGTAGATCAGGCAAAGAGCTTACTTTTCAGCCTTTTAATTGTTTTCCTGG 670 ** * ***** * ** * *** ** * *** *** ** consensus_1230#0 AACTATTCTAAATT---------- 710 consensus_1230#1 GGCGGTTCCTTTTTTATCTACATT 694 * *** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||