These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [GCCTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATGAAAAATCTCGCATTTTATCGCTCGGATTGCTAACTTTAGTAACAAATTAAATATCTTTCCCTTCGTCTAACGTGGATATGGTCTGTCCTTCCTTGGGATTTACACACACACACTCACACACAGACAAACATACATTCCCAAAAGAAGGGGGGAATGTGTCGAAACGGTATTTCACTCTTCACTGCAGCAAAAGTAAAAAAAAAACAACTTTTCCTCACGATTTAAGAATAAATGCACACAGACACAACGCGCTGCGTAGTCGCCCCGCCACACCTGTCAAATGGGGCCGGCTTTTGACGTTTGGGCACAGCAAGCCGAGCAACCGCTCTCTCTCTCTCTCACTCTCTCCGTACCACTGATACTGATAAGAGACAGAATTGCAGCAGGCCTAGGGACCGGTCCCCGTACCAAATATGGGCGTTTGGTGAAAGAGAATGATGCTTTCCTTTCCCTTTTTTTTACAGACCCACTTTCGCCGTGCCGAGA] [+] EMBL CNS0928W [GCCTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATGAAAAATCTCGCATTTTATCGCTCGGATTGCTAACTTTAGTAACAAATTAAATATCTTTCCCTTCGTCTAACGTGGATATGGTCTGTCCTTCCTTGGGATTTACACACACACACTCACACACAGACAAACATACATTCCCAAAAGAAGGGGGGAATGTGTCGAAACGGTATTTCACTCTTCACTGCAGCAAAAGTAAAAAAAAAACAACTTTTCCTCACGATTTAAGAATAAATGCACACAGACACAACGCGCTGCGTAGTCGCCCCGCCACACCTGTCAAATGGGGCCGGCTTTTGACGTTTGGGCACAGCAAGCCGAGCAACCGCTCTCTCTCTCTCTCACTCTCTCCGTACCACTGATACTGATAAGAGACAGAATTGCAGCAGGCCTAGGGACCGGTCCCCGTACCAAATATGGGCGTTTGGTGAAAGAGAATGATGCTTTCCTTTCCCTTTTTTTTACAGACCCACTTTCGCCGTGCCGAGA] consensusID : consensus_1244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [AACATGTTTCCATCGTTCTGGGGCGTTGTTCCCGTCGAGTTGTGGTAGCCTTTCCGCTTTGAGCTTTGCCTTTAATAGATTGAATCCCCCTGGGGGGAGGTTGGTTGTTTCAAGGGGTTTGTGGCGTGGGGAATGTGTCGAAACGGTATTTCACTCTTCACTGCAGCAGCAAAAAAACAACTTTTCCTCACGATTTAAGAATAAATGCACACAGACACAACGCGCTGCGTAGTCGCCCCGCCACACCTGTCAAATGGGGTTCCTTGTTTTTTTTTTTTTCACCACAACCACTTCCACACGCCCAGCAGCAGTGGTTTGAAATAGCGATTATATCGCTTCAACCACCACTACACAGCAGCAGATGCGACATGCGGGGGAG] [+] EMBL AGA284121 [AACATGTTTCCATCGTTCTGGGGCGTTGTTCCCGTCGAGTTGTGGTAGCCTTTCCGCTTTGAGCTTTGCCTTTAATAGATTGAATCCCCCTGGGGGGAGGTTGGTTGTTTCAAGGGGTTTGTGGCGTGGGGAATGTGTCGAAACGGTATTTCACTCTTCACTGCAGCAGCAAAAAAACAACTTTTCCTCACGATTTAAGAATAAATGCACACAGACACAACGCGCTGCGTAGTCGCCCCGCCACACCTGTCAAATGGGGTTCCTTGTTTTTTTTTTTTTCACCACAACCACTTCCACACGCCCAGCAGCAGTGGTTTGAAATAGCGATTATATCGCTTCAACCACCACTACACAGCAGCAGATGCGACATGCGGGGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1244#0 GCCTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATGAAAAATCTCGCATTTTATCGCTCG 60 consensus_1244#1 ----------------------------------------AACATGT-TTCCATCGTTCT 19 * * * ** **** ** consensus_1244#0 GATTGCTAACTTTAGTAACAAATTAAATATCTTTCCCTTCGTCTAACGTGGATATGGTCT 120 consensus_1244#1 GGGGCGTTGTTCCCGT--CGAGTTG--TGGTAGCCTTTCCGCTT----TGAGCTTTGCCT 71 * * * ** * * ** * * * ** * ** * * ** consensus_1244#0 GTCCTTCCTTGGGATTTACACACACACACTCACACACAGACAAACATACATTCCCAAAAG 180 consensus_1244#1 TTAATAGATTGAATCCCCCTGGGGGGAGGTTGGTTGTTTCAAGGGGTTTGT--------G 123 * * *** * * * * * * consensus_1244#0 AAGGGGGGAATGTGTCGAAACGGTATTTCACTCTTCACTGCAGCAAAAGTAAAAAAAAAA 240 consensus_1244#1 GCGTGGGGAATGTGTCGAAACGGTATTTCACTCTTCACTGCAGCAGCA------AAAAAA 177 * ***************************************** * ****** consensus_1244#0 CAACTTTTCCTCACGATTTAAGAATAAATGCACACAGACACAACGCGCTGCGTAGTCGCC 300 consensus_1244#1 CAACTTTTCCTCACGATTTAAGAATAAATGCACACAGACACAACGCGCTGCGTAGTCGCC 237 ************************************************************ consensus_1244#0 CCGCCACACCTGTCAAATGGGGCCGGCTTTTGACGTTTGGGCACAGCAAGCCGAGCAACC 360 consensus_1244#1 CCGCCACACCTGTCAAATGGGGTTC-CTTGTTTTTTTTTTTTTCACCA-------CAACC 289 ********************** *** * *** ** ** ***** consensus_1244#0 GCTCTCTCTCTCTCTCACTCTCTCCGTACCACTGATACTGATAAGAGACAGAATTGCAGC 420 consensus_1244#1 ACTT----------CCACACGCCCAGCAGCAGTGGTTTGAAATAGCGATTATATCGCTTC 339 ** *** * * * * * ** ** * * ** ** ** ** * consensus_1244#0 AGGCCTAGGGACCGGTCCCC-GTACCAAATATGGGCGTTTGGTGAAAGAGAATGATGCTT 479 consensus_1244#1 AACC------ACCACTACACAGCAGCAGATGCGA-CATGCGGGGGAG------------- 379 * * *** * * * * * ** ** * * * ** * * consensus_1244#0 TCCTTTCCCTTTTTTTTACAGACCCACTTTCGCCGTGCCGAGA 522 consensus_1244#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||