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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1249 cluster # 1249       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1249#0 length = 388 sequences # 1  
consensus_1249#1 length = 335 sequences # 1  

consensusID : consensus_1249#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence
                              [GCAGAATCGGCACCAGGGGGATTCAGCATCTTCGCCGTCGCTTGCTGGGTGAGTTGAGGCCGCTGCAGCGCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCTCCGCGTCCACCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGCTGGTGGTAAGCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCGACCACGCCGAAGGTGAGCCGCAAGGCCCTGACCGGGTCGAGCCGCTGAAACGACGGGGGCGGGGCTGCACATACAACCTTCAGGCAGACACCACCACCATCACCACCATCTGCAGCATCATAATCACCACCATCATCACCATCACAGTAGCCATCTTCATCAAA]

[+] EMBL BX466421             [GCAGAATCGGCACCAGGGGGATTCAGCATCTTCGCCGTCGCTTGCTGGGTGAGTTGAGGCCGCTGCAGCGCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCTCCGCGTCCACCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGCTGGTGGTAAGCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCGACCACGCCGAAGGTGAGCCGCAAGGCCCTGACCGGGTCGAGCCGCTGAAACGACGGGGGCGGGGCTGCACATACAACCTTCAGGCAGACACCACCACCATCACCACCATCTGCAGCATCATAATCACCACCATCATCACCATCACAGTAGCCATCTTCATCAAA]


>consensus_1249#0 GCAGAATCGGCACCAGGGGGATTCAGCATCTTCGCCGTCGCTTGCTGGGTGAGTTGAGGC CGCTGCAGCGCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCT CCGCGTCCACCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGC TGGTGGTAAGCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCGACCACGCCGAAGGTGA GCCGCAAGGCCCTGACCGGGTCGAGCCGCTGAAACGACGGGGGCGGGGCTGCACATACAA CCTTCAGGCAGACACCACCACCATCACCACCATCTGCAGCATCATAATCACCACCATCAT CACCATCACAGTAGCCATCTTCATCAAA



consensusID : consensus_1249#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence
                              [GTACGAAGCAGCAGCAGCATATGCTGGCAGCCGGCAGCAACAATGGCACAGTAATCGCACCATCGGAAGAAAAGCCGCAGTACGATGCGGGAGCGGGAGAAGGTGGAGGAGATGAAAGCGATGAAGGAGGGGGAACAGCATCTTCGCCGTCGCTTGCTGGTGAGTTGAGGCCGCTGCAGCGCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCTCCGCGTCCACCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGCTGGTGGTAAGCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCG]

[+] EMBL AGA284148            [GTACGAAGCAGCAGCAGCATATGCTGGCAGCCGGCAGCAACAATGGCACAGTAATCGCACCATCGGAAGAAAAGCCGCAGTACGATGCGGGAGCGGGAGAAGGTGGAGGAGATGAAAGCGATGAAGGAGGGGGAACAGCATCTTCGCCGTCGCTTGCTGGTGAGTTGAGGCCGCTGCAGCGCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCTCCGCGTCCACCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGCTGGTGGTAAGCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCG]


>consensus_1249#1 GTACGAAGCAGCAGCAGCATATGCTGGCAGCCGGCAGCAACAATGGCACAGTAATCGCAC CATCGGAAGAAAAGCCGCAGTACGATGCGGGAGCGGGAGAAGGTGGAGGAGATGAAAGCG ATGAAGGAGGGGGAACAGCATCTTCGCCGTCGCTTGCTGGTGAGTTGAGGCCGCTGCAGC GCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCTCCGCGTCCA CCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGCTGGTGGTAA GCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1249#0      ------------------------------------------------------------
consensus_1249#1      GTACGAAGCAGCAGCAGCATATGCTGGCAGCCGGCAGCAACAATGGCACAGTAATCGCAC 60
                                                                                  

consensus_1249#0      ---------------------------------------------------GCAGAATCG 9
consensus_1249#1      CATCGGAAGAAAAGCCGCAGTACGATGCGGGAGCGGGAGAAGGTGGAGGAGATGAAAGCG 120
                                                                             ** **

consensus_1249#0      GCACCAG-GGGGATTCAGCATCTTCGCCGTCGCTTGCTGGGTGAGTTGAGGCCGCTGCAG 68
consensus_1249#1      ATGAAGGAGGGGGAACAGCATCTTCGCCGTCGCTTGCTGG-TGAGTTGAGGCCGCTGCAG 179
                            * ****   ************************* *******************

consensus_1249#0      CGCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCTCCGCGTCC 128
consensus_1249#1      CGCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCTCCGCGTCC 239
                      ************************************************************

consensus_1249#0      ACCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGCTGGTGGTA 188
consensus_1249#1      ACCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGCTGGTGGTA 299
                      ************************************************************

consensus_1249#0      AGCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCGACCACGCCGAAGGTGAGCCGCAAG 248
consensus_1249#1      AGCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCG------------------------ 335
                      ************************************                        

consensus_1249#0      GCCCTGACCGGGTCGAGCCGCTGAAACGACGGGGGCGGGGCTGCACATACAACCTTCAGG 308
consensus_1249#1      ------------------------------------------------------------
                                                                                  

consensus_1249#0      CAGACACCACCACCATCACCACCATCTGCAGCATCATAATCACCACCATCATCACCATCA 368
consensus_1249#1      ------------------------------------------------------------
                                                                                  

consensus_1249#0      CAGTAGCCATCTTCATCAAA 388
consensus_1249#1      --------------------
                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)