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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[CCGCCCACGCGTCCGCGCAGATGCCGAACGATTTCCTGACGTTCCAGGACGTGGCGACGGAGTCGTGCCACCCGATCCGGCTGTACTGCCGGTACGTCGATCGGATTCACATTTTCTTCCGCTTCACGGCGGAGGAGGCGCGCGATCTGATCCAGCGCTACCTCACCGAGCATCCGGATCCGAACAACGAGAACATTGTGGGCTACAACAACAAGAAGTGCTGGCCGCGCGATGCTCGCATGCGGCTGATGAAGCACGACGTCAATCTGGGGCGTGCCGTGTTCTGGGACATTAAGAACCGTTTGCCGCGCTCCGTTACGACGGTGCAGTGGGACAATACGTTCGTGTCGGTGTACTCGAAGGACAATCCGAACTTGCTGTTCAACATGTCCGGGTTTGAGTGTCGCATTCTGCCCAAGTGCCGTACGCAGAACGACGAGTTTACGCACCGCGATGGGGTGTGGAATTTGCAGAACGAGGTGACGAAGGAGCGTACGGCCCAGTGCTTCCTGCGTGTGGATGATGAGTCGCTCAGCCGGTTCCACAATCGCGTGCGCCAGATTTTGATGGCATCGGGATCGACGACGTTCACGAAGATTGTCAACAAGTGGAACACGGCGCTGATCGGTCTGATGACGTACTTCCGCGAGGCGGTGGTCAACACGCA]
[+] EMBL BM611906 [CCGCCCACGCGTCCGCGCAGATGCCGAACGATTTCCTGACGTTCCAGGACGTGGCGACGGAGTCGTGCCACCCGATCCGGCTGTACTGCCGGTACGTCGATCGGATTCACATTTTCTTCCGCTTCACGGCGGAGGAGGCGCGCGATCTGATCCAGCGCTACCTCACCGAGCATCCGGATCCGAACAACGAGAACATTGTGGGCTACAACAACAAGAAGTGCTGGCCGCGCGATGCTCGCATGCGGCTGATGAAGCACGACGTCAATCTGGGGCGTGCCGTGTTCTGGGACATTAAGAACCGTTTGCCGCGCTCCGTTACGACGGTGCAGTGGGACAATACGTTCGTGTCGGTGTACTCGAAGGACAATCCGAACTTGCTGTTCAACATGTCCGGGTTTGAGTGTCGCATTCTGCCCAAGTGCCGTACGCAGAACGACGAGTTTACGCACCGCGATGGGGTGTGGAATTTGCAGAACGAGGTGACGAAGGAGCGTACGGCCCAGTGCTTCCTGCGTGTGGATGATGAGTCGCTCAGCCGGTTCCACAATCGCGTGCGCCAGATTTTGATGGCATCGGGATCGACGACGTTCACGAAGATTGTCAACAAGTGGAACACGGCGCTGATCGGTCTGATGACGTACTTCCGCGAGGCGGTGGTCAACACGCA]
consensusID : consensus_1273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[CCGCCCACGCGTCCGGGAACACGGCGCTGATCGGTCTGATGACGTACTTCCGCGAGGCGGTGGTCAACACGCAGGAGTTGCTGGATTTGCTGGTGAAGTGTGAGAACAAAATCCAGACGCGTATCAAGATTGGATTGAACTCCAAAATGCCCTCCCGTTTCCCGCCCGTCGTGTTCTACACGCCCAAGGAGCTGGGTGGTTTGGGCATGTTGAGCATGGGGCACGTGCTTATCCCGCAGTCGGATCTGCGCTGGTCGAAGCAAACCGATGTGGGCATTACGCACTTCCGGTCCGGTATGTCGCACGACGAGGATCAGCTGATTCCGAATCTGTACCGCTACATTCAGCCGTGGGAGAGTGAGTTTATCGATTCGCAGCGTGTGTGGGCCGAGTACGCGCTGAAGCGCCAGGAGGCGAACGCGCAGAACCGTCGCCTCACGCTGGAAGATCTGGAGGACAGCTGGGATCGGGGCATTCCGCGTATCAACACGCTGTTCCAGAAGGATCGCCACACGCTCGCGTACGACAAGGGCTGGCGCATCCGGACGGAGTTCAAGCAGTACCAGGTGCTGAAGCAGAATCCGTTCTGGTGGACGCACCAGCGCCACGACGGCAAGCTGTGGAATTTGAACAACTACCGCACGGACATGATACAGGCGCTGGG]
[+] EMBL BM653885 [CCGCCCACGCGTCCGGGAACACGGCGCTGATCGGTCTGATGACGTACTTCCGCGAGGCGGTGGTCAACACGCAGGAGTTGCTGGATTTGCTGGTGAAGTGTGAGAACAAAATCCAGACGCGTATCAAGATTGGATTGAACTCCAAAATGCCCTCCCGTTTCCCGCCCGTCGTGTTCTACACGCCCAAGGAGCTGGGTGGTTTGGGCATGTTGAGCATGGGGCACGTGCTTATCCCGCAGTCGGATCTGCGCTGGTCGAAGCAAACCGATGTGGGCATTACGCACTTCCGGTCCGGTATGTCGCACGACGAGGATCAGCTGATTCCGAATCTGTACCGCTACATTCAGCCGTGGGAGAGTGAGTTTATCGATTCGCAGCGTGTGTGGGCCGAGTACGCGCTGAAGCGCCAGGAGGCGAACGCGCAGAACCGTCGCCTCACGCTGGAAGATCTGGAGGACAGCTGGGATCGGGGCATTCCGCGTATCAACACGCTGTTCCAGAAGGATCGCCACACGCTCGCGTACGACAAGGGCTGGCGCATCCGGACGGAGTTCAAGCAGTACCAGGTGCTGAAGCAGAATCCGTTCTGGTGGACGCACCAGCGCCACGACGGCAAGCTGTGGAATTTGAACAACTACCGCACGGACATGATACAGGCGCTGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1273#0 CCGCCCACGCGTCCGCGCA---GATGCCGAACGATTTCCTGACGTTCCAGGACGTGGCGA 57
consensus_1273#1 CCGCCCACGCGTCCGGGAACACGGCGCTGATCGGTCTGATGACGTACTTCCGCGAGGCGG 60
*************** * * * ** ** ** * * ****** * ** ****
consensus_1273#0 CGGAGTCGTGCCACCCGATCCGGCTGTACTGCCGGTACGTCGATCGGATTCACATTTTCT 117
consensus_1273#1 TGG--TCAACACGCAGGAGTTGCTGGATTTGCTGGTGAAGTG-TGAGAACAAAATCCAGA 117
** ** * * ** * * *** *** * * ** * **
consensus_1273#0 TCCGCTTCACGGCGGAGGAGGCGCGCGATCTGATCCAGCGCTACCTCACCGAGCATCCGG 177
consensus_1273#1 CGCGTATCAAGATTGGATTGAACTCCAAAATGCCCTCCCGTTTCC----CGCCCGTCGTG 173
** *** * * * * * ** * ** * ** ** * ** *
consensus_1273#0 ATCCGAACAACGAGAACATTGTGGGCTACAACAACAAGAAGTGCTGGCCGCGCGATGCTC 237
consensus_1273#1 TTCTACACGCCCAAGGAGCTGGGTGGTTTGGGCATGTTGAGCATGGGGCACGTGCTTATC 233
** ** * * ** * * * * ** ** * ** * * **
consensus_1273#0 GCATGCGGCTGATGAAGCACGACGTCAATCTGGGGCGTGCCGTGTTCTGGGACATTAAGA 297
consensus_1273#1 CC--GCAGTCGGATCTGCGCTGGTCGAAGCAAACCGATGTGGGCATTACGCACTTCCGGT 291
* ** * * ** * ** * ** * * * ** * *
consensus_1273#0 ACCGTTTGCCGCGCTCCGTTACGACGGTGCAGTGGGACAATACGTTCGTGTCGGTGTACT 357
consensus_1273#1 CCGGTATGTCGCACG-----ACGAGGAT-CAGCTG-ATTCCGAATCTGTACCGCTACATT 344
* ** ** *** * **** * * *** * * * ** ** * * *
consensus_1273#0 CGA--AGGACAATCCGAACTTGCTGTTCAACATGTCCGGGTTTGAGTGTCGCATTCTGCC 415
consensus_1273#1 CAGCCGTGGGAGAGTGAGTTTATCGATTCGCAG---CGTGTGTGGGCCGAGTACGC-GCT 400
* * * ** ** * * ** ** ** ** * * * * **
consensus_1273#0 CAAGTGCCGTACGCAGAACGACGAGTTTACGCACCGCGATGGGGTGTGGAATTTGCAGAA 475
consensus_1273#1 GAAGCGCCA---GGAGGCGAACGCGCAGAACCGTCGCCTCACGCTGGAAGATCTGGAGGA 457
*** *** * ** *** * * * *** * ** ** ** ** *
consensus_1273#0 CGAGGTGACGAAGGAGCGTACGGCCCAGTGCTTCCTGCGTGTGGATGATGAGTCGCTCAG 535
consensus_1273#1 C-AGCTGGGATCGGGGCATTCCGCGTATCAACACGCTGTTCCAGAAGGATCGCCACACGC 516
* ** ** ** ** * * ** * * * ** * * * * *
consensus_1273#0 CCG-GTTCCACAATCGCGTGCGC-------CAGATTTTGA-TGGCATCGGGATC---GAC 583
consensus_1273#1 TCGCGTACGACAAGGGCTGGCGCATCCGGACGGAGTTCAAGCAGTACCAGGTGCTGAAGC 576
** ** * **** ** **** * ** ** * * * * ** * *
consensus_1273#0 GACGTTCACGAAGATTGTCAACAAGTGGAACACGGCGCTGATCGGTCTGAT--GACGTAC 641
consensus_1273#1 AGAATCCGTTCTGGTGGACG-CACCAGCGCCACGACGGCAAGCTGTGGAATTTGAACAAC 635
* * * * * * ** * **** ** * * ** ** ** **
consensus_1273#0 TTCCGCGAGGCGGTGGTCAACACGCA--- 667
consensus_1273#1 TACCGCACGGACATGATACAGGCGCTGGG 664
* **** ** ** * * ***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||