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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence
[GCAGATCGGCACAGGCGGTAGACATGGTTTCAGAACGATGGAACCGAAGTGTTGTTAGAAAGTTGTTTCCTTCATTCTACCTCATGTTTCACAATAATAAGATTTTCAGTGCATGTGGCCACGGTTATCTGTTGATTCGGGATCCGCATCCGCTTTTTACCAAAACCATTTGGTAAAGCAGTAATGGCAACATATAGGATAGGACTTGCAAAAGGAAACTGTGTGTGTGTGTGTTTCTCACTCACCAAGCAGCAGTAGCAGCAGCATACCAATCTGAAAGGGCAAACACCACTTAGGCTGACAAAAGAAAATTAAAAATAATAATATCTGTGATTGTTTCAGTGAACATCCGGTCGTTCTGTGAGAATGTAAAGTCGGCGGGCTGCTCTGAAATGAAAAAGATTCTAGGTTTACGCGCAGGATAGAGCAGGTTACCGCAATCCTCTCTACCCCTCCACACACACGCTATGCAGCAGTTCTTTCAGTAACTTATCTCTCTTTTACGTGATCAACCATGCTTGTTGTGAGCGCCTTTTGATAGCTTATCAAGCAGAACTGACTGGTTATTTNATGTGCGAGTAAACATGTAACTATCTTTGCTCTTNCGGTNTGGTATCACCACTGGCACCAAACCATGCACCCCCGANTCTTCTCACAAGCCCCACTCACTGGCCG]
[+] EMBL BX466405 [GCAGATCGGCACAGGCGGTAGACATGGTTTCAGAACGATGGAACCGAAGTGTTGTTAGAAAGTTGTTTCCTTCATTCTACCTCATGTTTCACAATAATAAGATTTTCAGTGCATGTGGCCACGGTTATCTGTTGATTCGGGATCCGCATCCGCTTTTTACCAAAACCATTTGGTAAAGCAGTAATGGCAACATATAGGATAGGACTTGCAAAAGGAAACTGTGTGTGTGTGTGTTTCTCACTCACCAAGCAGCAGTAGCAGCAGCATACCAATCTGAAAGGGCAAACACCACTTAGGCTGACAAAAGAAAATTAAAAATAATAATATCTGTGATTGTTTCAGTGAACATCCGGTCGTTCTGTGAGAATGTAAAGTCGGCGGGCTGCTCTGAAATGAAAAAGATTCTAGGTTTACGCGCAGGATAGAGCAGGTTACCGCAATCCTCTCTACCCCTCCACACACACGCTATGCAGCAGTTCTTTCAGTAACTTATCTCTCTTTTACGTGATCAACCATGCTTGTTGTGAGCGCCTTTTGATAGCTTATCAAGCAGAACTGACTGGTTATTTNATGTGCGAGTAAACATGTAACTATCTTTGCTCTTNCGGTNTGGTATCACCACTGGCACCAAACCATGCACCCCCGANTCTTCTCACAAGCCCCACTCACTGGCCG]
consensusID : consensus_1276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence
[AGATCGCCCGAGTCAAAGGAAACTGTGTGTGTGTGTGTTCTCACTCACCAAGCAGCAGTAGCAGCAGCATACCAATCTGAAAGGGCAAACACCACTTAGGCTGACAAAAGAAAATTAAAAATAATAATATCTGTGATTGTTTCAGTGAACATCCGGTCGTTCTGTGAGAATGTAAAGTCGGCGGGCTGCTCTGAAATGAAAAAGATTCTAGGTTTACGCGCAGGATAGAGCAGGTTACCGCAATCCTCTCTACCCCTCCACACACACGCTATGCAGCAGTTCTTTCATAACTTATCTCTCTTTTACGTGATCAACCATGCTTGTTTGAGCGCCTTTCGATAGCTTATCAAGCAGAACTGACTGGTTATTTTATGTGCGATAAACATGTAACTATCTTTGTGTCGGTATCACCACTGCCACCAAACCA]
[+] EMBL AL931682 [AGATCGCCCGAGTCAAAGGAAACTGTGTGTGTGTGTGTTCTCACTCACCAAGCAGCAGTAGCAGCAGCATACCAATCTGAAAGGGCAAACACCACTTAGGCTGACAAAAGAAAATTAAAAATAATAATATCTGTGATTGTTTCAGTGAACATCCGGTCGTTCTGTGAGAATGTAAAGTCGGCGGGCTGCTCTGAAATGAAAAAGATTCTAGGTTTACGCGCAGGATAGAGCAGGTTACCGCAATCCTCTCTACCCCTCCACACACACGCTATGCAGCAGTTCTTTCATAACTTATCTCTCTTTTACGTGATCAACCATGCTTGTTTGAGCGCCTTTCGATAGCTTATCAAGCAGAACTGACTGGTTATTTTATGTGCGATAAACATGTAACTATCTTTGTGTCGGTATCACCACTGCCACCAAACCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1276#0 GCAGATCGGCACAGGCGGTAGACATGGTTTCAGAACGATGGAACCGAAGTGTTGTTAGAA 60
consensus_1276#1 ------------------------------------------------------------
consensus_1276#0 AGTTGTTTCCTTCATTCTACCTCATGTTTCACAATAATAAGATTTTCAGTGCATGTGGCC 120
consensus_1276#1 ------------------------------------------------------------
consensus_1276#0 ACGGTTATCTGTTGATTCGGGATCCGCATCCGCTTTTTACCAAAACCATTTGGTAAAGCA 180
consensus_1276#1 ------------------------------------------------------------
consensus_1276#0 GTAATGGCAACATATAGGATAGGACTTGCAAAAGGAAACTGTGTGTGTGTGTGTTTCTCA 240
consensus_1276#1 ----------------AGATCGCCCGAGTCAAAGGAAACTGTGTGTGTGTGTGTT-CTCA 43
*** * * * ************************* ****
consensus_1276#0 CTCACCAAGCAGCAGTAGCAGCAGCATACCAATCTGAAAGGGCAAACACCACTTAGGCTG 300
consensus_1276#1 CTCACCAAGCAGCAGTAGCAGCAGCATACCAATCTGAAAGGGCAAACACCACTTAGGCTG 103
************************************************************
consensus_1276#0 ACAAAAGAAAATTAAAAATAATAATATCTGTGATTGTTTCAGTGAACATCCGGTCGTTCT 360
consensus_1276#1 ACAAAAGAAAATTAAAAATAATAATATCTGTGATTGTTTCAGTGAACATCCGGTCGTTCT 163
************************************************************
consensus_1276#0 GTGAGAATGTAAAGTCGGCGGGCTGCTCTGAAATGAAAAAGATTCTAGGTTTACGCGCAG 420
consensus_1276#1 GTGAGAATGTAAAGTCGGCGGGCTGCTCTGAAATGAAAAAGATTCTAGGTTTACGCGCAG 223
************************************************************
consensus_1276#0 GATAGAGCAGGTTACCGCAATCCTCTCTACCCCTCCACACACACGCTATGCAGCAGTTCT 480
consensus_1276#1 GATAGAGCAGGTTACCGCAATCCTCTCTACCCCTCCACACACACGCTATGCAGCAGTTCT 283
************************************************************
consensus_1276#0 TTCAGTAACTTATCTCTCTTTTACGTGATCAACCATGCTTGTTGTGAGCGCCTTTTGATA 540
consensus_1276#1 TTCA-TAACTTATCTCTCTTTTACGTGATCAACCATGCTTGTT-TGAGCGCCTTTCGATA 341
**** ************************************** *********** ****
consensus_1276#0 GCTTATCAAGCAGAACTGACTGGTTATTTNATGTGCGAGTAAACATGTAACTATCTTTGC 600
consensus_1276#1 GCTTATCAAGCAGAACTGACTGGTTATTTTATGTGCGA-TAAACATGTAACTATCTTTGT 400
***************************** ******** ********************
consensus_1276#0 TCTTNCGGTNTGGTATCACCACTGGCACCAAACCATGCACCCCCGANTCTTCTCACAAGC 660
consensus_1276#1 G--------TCGGTATCACCACTGCCACCAAACCA------------------------- 427
************* **********
consensus_1276#0 CCCACTCACTGGCCG 675
consensus_1276#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||